RNA id: XM_036946378.1


Basic Information

Item Value
RNA id XM_036946378.1
length 2127
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC110491505
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 18525206 ~ 18550690 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGCAACAGTAACGAGGAAACAGTCGGTGATTGTATTTGACTAACGTTTAATTAAAAAGTATATGTTTCAGAAAACAAAGAAAGGCATACAACAACAGATGACAAACAGGTACACAGTAAGCGTGAAAGAATTAACATTTGGAAGTGTCGACGCATAGCAAATTGAAGGAGTCGGAGGTTAATTTAAAAAATCGAAACCTTGCTCAACTCTGTGGAGGAGTTAAGCTGGCTAACAACCGAGATCACATATTGCAGAACAGCAACCAAGAGGTCATTGGAAGGAAACTGTCACGTGACTTCTGGGTGCCAATGTTCCTTCAGAAGGTCAAAAGGGCCCCAATAGCTGATGAGACATTTCTTGACAATGCAAAGAAATACCTACCAAGACGCCATAGCAATATTTGGAGAGTCCCCATACCATGGTGCCAGTGGATTTGGATACAATCATGACGCACCAGCCCACCAACCCTTGGCCTACCAGGAGAGCCAGGTCAACTTGAAGGAGTTGGATTGCTCATCGCAGTCAAATGGCAACAGCAAATCACAGCACCCAAAAGAGATTGACCCTAACTCAAATTCTACCTTCACCAAAAGCATATTCCCGTGGATGAAGAAGTCGACAATTCAGAAATGTATAAAGAACAACGGAGACAATCCCTTAGAAGTTAATGAACTATTTGGTGACGAGGAAAGCCCAACAACTGCAGTCTCCAAAAGGGCGCGCACCGCATACACAAGCGCCCAGTTGGTTGAGCTCGAGAAGGAGTTCCACTTCAATCGTTACCTTTGCCGCCCCAGGCGCGTGGAGATGGCTAGCCAACTCAGTCTAAAGGAGAGGCAGATCAAGATTTGGTTTCAAAATCGGAGAATGAAGTGCAAGAAAGATGGAAAGTTTAAAGGACTGTGCTCCTCTTTAGGTAGCCCTGGAACTCTTACCAATCTAGGTTATTTTAATGCAATGGGGGAGGATTATGACACTGTTTCCCCGCCATATTTAAAGCATCAACAAAACGATTATGTCAGTGCATCAGTCTACCCAAACTCAATGAAAGGGCAACAGAAATATGCCACAACCCCAGAATATGCTCCTTGCAGTATGCAGGACAATGATAGTAGTTTTTCCATTCATTATGCTCAAGCTGACCCTGTTCATGTTGATGTGAACTTGCCATTCACTGCATGCGGGATAAGAAATCAGTGTAATCAGACTGCACAGATGACGTCAAGCCAACACCATCCTAAACCTACACTATATGATCCAAACACAACATACATATTGGGGCATCATTCTTCTCAAGAATGAATCAAGCAAGCTCCTAAACTGACTAATTTATAGCATATGTAGTCAAAATGTCACTTGACCATAATCAGATCCTTAGTGGACCGAATCCAAAGTTCAGGCCTGCACacgttaaaaaaataaataattgcgCAAAAGGCCAATTATTAGCTGTATCCAAATGCATGCAAATAGTGTTGAGTCATTACAGCAGAGTTACTAATATTTTACTCGAAAAGAGCAGCTTTAACTATTTTGGGAATTAAGCGACTGATTGTGACCACTAGAGTCGGAGGTAAAACACAGAGTTAATTCGACTAGAGTGTTTATGAGTATTGCTAGAGTCAATGTGATGCCATCCACAGATCAGCACCTGCATAGGCTATTCGTTCCTGTTGGACAGTTCTGTTTTTCTATTTTGATTTCTTATCCATATAGGATAAACCTGAAATTATTTAATGACATGAAACCACCGGATAATGTAAAACATCGAATTTAAATCATTATCAAGCAAAAACGTTTCTCACTTATGTTTTTGTACAAGACTTGACATTATGCAAGTCATGACCCAACTGTGTGCATTGGAATATTACAAACATATTTATTACAATGTTATTTATATGTTATTTATTAATTTAATTTATGGGAATTGAATGTATTTAGTGATTTCTTATCATAGGGCTTAGTGTTTACAGACAGACTCTTATGCTTCAGGGACAGTTGAACCAATGTTCCTCAAAATGTCATTTCATTGTGAAATCCTTTTGGACACCCGTTGAAATGCATGTGTAGGCTATGCTGACGAATCATTTCTGTATATTGTTGAATAAATGCATTTGTTGATCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1542009 lncRNA downstream 827 18524179 ~ 18524379 (-) True hoxb1b
TU1541994 lncRNA downstream 10492 18514478 ~ 18514714 (-) True G1348858
TU1541908 lncRNA downstream 133038 18390771 ~ 18392168 (-) True G1348778
TU1541935 lncRNA downstream 134683 18390246 ~ 18390523 (-) True G1348804
TU1541931 lncRNA downstream 144794 18379533 ~ 18380412 (-) True G1348800
TU1542544 lncRNA upstream 3258 18553948 ~ 18554545 (-) False ttll6
TU1542547 lncRNA upstream 6032 18556722 ~ 18557003 (-) True G1349329
TU1542546 lncRNA upstream 8060 18558750 ~ 18559714 (-) True ttll6
TU1542558 lncRNA upstream 27864 18578554 ~ 18578786 (-) True G1349340
TU1542560 lncRNA upstream 28601 18579291 ~ 18579519 (-) True G1349342
XM_021565005.2 mRNA downstream 161 18522453 ~ 18525045 (-) False hoxb1b
XM_021564996.2 mRNA downstream 12793 18477077 ~ 18512413 (-) False LOC110491502
XM_021564995.2 mRNA downstream 12794 18477670 ~ 18512412 (-) True LOC110491502
XM_036946374.1 mRNA downstream 67685 18447916 ~ 18457521 (-) True cbx1b
XM_021565000.2 mRNA downstream 67686 18447916 ~ 18457520 (-) False cbx1b
XM_036945852.1 mRNA upstream 505 18551195 ~ 18552971 (-) True LOC110492883
XM_021565008.2 mRNA upstream 2486 18553176 ~ 18575510 (-) False ttll6
XM_021565011.2 mRNA upstream 2486 18553176 ~ 18575510 (-) False ttll6
XM_036946380.1 mRNA upstream 2487 18553177 ~ 18575510 (-) False ttll6
XM_036946381.1 mRNA upstream 44961 18595651 ~ 18602193 (-) False snf8
TU1541907 other downstream 102020 18417615 ~ 18423186 (-) True prr15lb
TU1540612 other downstream 1133252 17389385 ~ 17391954 (-) True LOC110491477
TU1540318 other downstream 1329077 17195330 ~ 17196129 (-) True G1347343
TU1539999 other downstream 1595774 16924522 ~ 16929432 (-) False G1347067
TU1542585 other upstream 83341 18634031 ~ 18634405 (-) True G1349366
TU1542973 other upstream 770180 19320870 ~ 19325054 (-) True LOC110491541
TU1543183 other upstream 910351 19461041 ~ 19461815 (-) True G1349896
TU1543843 other upstream 1141002 19691692 ~ 19697658 (-) True LOC110491553
TU1545321 other upstream 1779710 20330400 ~ 20333729 (-) True LOC110491567

Expression Profile