RNA id: TU1542508


Basic Information

Item Value
RNA id TU1542508
length 232
lncRNA type sense_over
GC content 0.35
exon number 1
gene id LOC110491505
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 18525206 ~ 18550690 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTATAATGACAATGTAAATAGAAAAAGTGGGAAATGTATGGTATCCATTTGATAGCTAAATTCAACAAATCCATGTGCATGGTCTGAACCGGTCACGGCTAAATTACCTCGGCTAAATTTCGTTAGATTGGTCTTTGATCAAAAGACTGGTCAATGTTTAGATTATTTTGTGTTGTAGCCTAATTACTTTCGTGTAGTTAAACATTAGCTATCCTGCCTGGGGTATTAAC

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1542506 lncRNA downstream 1122 18528175 ~ 18528409 (-) False LOC110491505
TU1542009 lncRNA downstream 5152 18524179 ~ 18524379 (-) True hoxb1b
TU1541994 lncRNA downstream 14817 18514478 ~ 18514714 (-) True G1348858
TU1541908 lncRNA downstream 137363 18390771 ~ 18392168 (-) True G1348778
TU1541935 lncRNA downstream 139008 18390246 ~ 18390523 (-) True G1348804
TU1542517 lncRNA upstream 3792 18533554 ~ 18533859 (-) True G1349314
TU1542520 lncRNA upstream 8314 18538076 ~ 18538335 (-) True G1349317
TU1542544 lncRNA upstream 24186 18553948 ~ 18554545 (-) False ttll6
TU1542547 lncRNA upstream 26960 18556722 ~ 18557003 (-) True G1349329
TU1542546 lncRNA upstream 28988 18558750 ~ 18559714 (-) True ttll6
XM_021565005.2 mRNA downstream 4486 18522453 ~ 18525045 (-) False hoxb1b
XM_021564996.2 mRNA downstream 17118 18477077 ~ 18512413 (-) False LOC110491502
XM_021564995.2 mRNA downstream 17119 18477670 ~ 18512412 (-) True LOC110491502
XM_036946374.1 mRNA downstream 72010 18447916 ~ 18457521 (-) True cbx1b
XM_021565000.2 mRNA downstream 72011 18447916 ~ 18457520 (-) False cbx1b
XM_021565006.2 mRNA upstream 11486 18541248 ~ 18543472 (-) True LOC110491507
XM_021565007.2 mRNA upstream 14202 18543964 ~ 18546172 (-) True LOC110491508
XM_036945852.1 mRNA upstream 21433 18551195 ~ 18552971 (-) True LOC110492883
XM_021565008.2 mRNA upstream 23414 18553176 ~ 18575510 (-) False ttll6
XM_021565011.2 mRNA upstream 23414 18553176 ~ 18575510 (-) False ttll6
TU1541907 other downstream 106345 18417615 ~ 18423186 (-) True prr15lb
TU1540612 other downstream 1137577 17389385 ~ 17391954 (-) True LOC110491477
TU1540318 other downstream 1333402 17195330 ~ 17196129 (-) True G1347343
TU1539999 other downstream 1600099 16924522 ~ 16929432 (-) False G1347067
TU1542585 other upstream 104269 18634031 ~ 18634405 (-) True G1349366
TU1542973 other upstream 791108 19320870 ~ 19325054 (-) True LOC110491541
TU1543183 other upstream 931279 19461041 ~ 19461815 (-) True G1349896
TU1543843 other upstream 1161930 19691692 ~ 19697658 (-) True LOC110491553
TU1545321 other upstream 1800638 20330400 ~ 20333729 (-) True LOC110491567

Expression Profile