RNA id: XM_021565006.2


Basic Information

Item Value
RNA id XM_021565006.2
length 1704
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC110491507
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 18541248 ~ 18543472 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGTGATTCCCGAGCGCTCTCCCATATTTGGCCGCATACCTGGCAAAGTACAGTAGGCTTCATTGCTATAATTCATGATTACATCATAAATCGTGAAGCAGAGGATTATAGCGACAAAGATCTACAAATCGAGCCTTTAAAAACAAGCAAATGAGCTCTTACTTTGTTAACTCGTTTTCAGGGCGCTATCCGAATGGCTCCGACTATCAGTTACTAAATTATGGGACTAACGGCACTGTGAACGGTACGTTCAGGGACCCTGGCACCATGCACTCTGGGTCTTTCGGATGCAACTACAATGGCATGGACCTAACCGTAAATCGCCCCGACACTGGTAGCCACTTCGCGGCGGTTGGAGAGGATACCCGTGGTTTTCCGTCCACTGGCCCGGATGCCCGGTACAGATTGCCGACCTGCTCGCTTTCGTCTCCAGATCCCCTTTCTTGCGTCAACCGCGAGTCTTTGGAACTAAAAAGCCCCTCTCCTTCACCTGACCGGAGCACGACCTCGGGCGGCAATAATAATCTCAACAAAGGCAACAACAGTCATTTTACAGAGATAGAGGATACCAGCGTTGTCTCTGAGACCGAGGAAGGCGCGCACACAAGCAGTACCAGCAGCATGGCTGCCCGGGCACAACAACTACAACAGGAGTCCAATAACGCAACCTCCACGACAATCTCAAACGATTGCCAAACGCCGCAAATATTCCCATGGATGCGGAAACTGCACATTAACCATGAAATGGCTGGACCAGATGGGAAAAGGGCCCGAACAGCGTATACCCGCTACCAGACGCTAGAGCTGGAGAAAGAATTTCACTTCAATAGATACCTAACccggaggaggagaatagagataGCCCACACGTTGTGCCTCACGGAACGACAAATAAAAATCTGGTTTCAGAATCGAAGGATGAAATGGAAGAAAGACAATAAACTGAAAAGTATGAGCCTGGTTACAGGAGGTAGCGCGTTCCATAACTGAGCTCGAACTGCAAGTGATACGGGGGACATCAGGAGTACTGTAAGCTACAGCGCAGCACCTTTCAGCATGTTGTTGTGATTTTAGACGAAAAAATATTCTGTGGTCTTTAACAGACGTTTAGTTTGACGTTGTGTTACGGTAGCCTGTAGTTATCTTTGGAACTAGAAAAAGGTTAGACTCATTGTCTAAGGGTAGTATAAAGTCATGTGCTCTGTTTTATCTCTTGAATGTTGTCAAGTTTCACGTGAGCTGTTAGCCTATATTGTGTCATTTCTAAACATTCTAACAGGTGTAAAGTGTACAGTAGTCTATGTTTCCAAAACATATGCTGCTCTTCATTGAATGTAAACCTATAGATGATGGGATCATTCAAAGCGCTTCAGTGTAAGTTTTTAATGCTGTATTTATGCTTGATTATCGTGGTCAGCGCAGTACGTTTTCCAGGTTTAAAAATACAGGTAAAACTGTTATGTAGCCTATGACACGTTGTGCACAAATATATCCAATTGTAATTGTTTAGAACTAAGTACTTATTAAGTTGCATAAATGTATTGAACCTTTTCAATGTGATCAATTTGTATAGTGGACATGAAGGGAGTGGTATTCTGTGTGGTATACGCCTACAGTGATGGTAAAGATTTTGCCAATTAAgctttttgtatttctatgtgaatCTATAGATTTGGAAATAAAGTTTCTCTCCATCGCTTGATA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09305 HOX_5; homeobox protein HoxA/B/C5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1542520 lncRNA downstream 2913 18538076 ~ 18538335 (-) True G1349317
TU1542517 lncRNA downstream 7389 18533554 ~ 18533859 (-) True G1349314
TU1542508 lncRNA downstream 11486 18529531 ~ 18529762 (-) True LOC110491505
TU1542506 lncRNA downstream 12839 18528175 ~ 18528409 (-) False LOC110491505
TU1542009 lncRNA downstream 16869 18524179 ~ 18524379 (-) True hoxb1b
TU1542544 lncRNA upstream 10476 18553948 ~ 18554545 (-) False ttll6
TU1542547 lncRNA upstream 13250 18556722 ~ 18557003 (-) True G1349329
TU1542546 lncRNA upstream 15278 18558750 ~ 18559714 (-) True ttll6
TU1542558 lncRNA upstream 35082 18578554 ~ 18578786 (-) True G1349340
TU1542560 lncRNA upstream 35819 18579291 ~ 18579519 (-) True G1349342
XM_036946377.1 mRNA downstream 9035 18525206 ~ 18532213 (-) False LOC110491505
XM_036946375.1 mRNA downstream 9036 18525208 ~ 18532212 (-) False LOC110491505
XM_021565004.2 mRNA downstream 10496 18525206 ~ 18530752 (-) False LOC110491505
XM_036946376.1 mRNA downstream 10736 18525207 ~ 18530512 (-) False LOC110491505
XM_021565005.2 mRNA downstream 16203 18522453 ~ 18525045 (-) False hoxb1b
XM_021565007.2 mRNA upstream 492 18543964 ~ 18546172 (-) True LOC110491508
XM_036945852.1 mRNA upstream 7723 18551195 ~ 18552971 (-) True LOC110492883
XM_021565008.2 mRNA upstream 9704 18553176 ~ 18575510 (-) False ttll6
XM_021565011.2 mRNA upstream 9704 18553176 ~ 18575510 (-) False ttll6
XM_036946380.1 mRNA upstream 9705 18553177 ~ 18575510 (-) False ttll6
TU1541907 other downstream 118062 18417615 ~ 18423186 (-) True prr15lb
TU1540612 other downstream 1149294 17389385 ~ 17391954 (-) True LOC110491477
TU1540318 other downstream 1345119 17195330 ~ 17196129 (-) True G1347343
TU1539999 other downstream 1611816 16924522 ~ 16929432 (-) False G1347067
TU1542585 other upstream 90559 18634031 ~ 18634405 (-) True G1349366
TU1542973 other upstream 777398 19320870 ~ 19325054 (-) True LOC110491541
TU1543183 other upstream 917569 19461041 ~ 19461815 (-) True G1349896
TU1543843 other upstream 1148220 19691692 ~ 19697658 (-) True LOC110491553
TU1545321 other upstream 1786928 20330400 ~ 20333729 (-) True LOC110491567

Expression Profile