RNA id: XM_021565011.2


Basic Information

Item Value
RNA id XM_021565011.2
length 4316
RNA type mRNA
GC content 0.47
exon number 16
gene id ttll6
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 18553176 ~ 18575510 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACGAACAATGGGCTGTGTGATTGGACGAAACTACAGCCTGTTTGTGTAGGAGGAACTTCAGCGCAGAAGAACAGGACGTCAGGAATGTTTTTAAACAATATTGACACCGTGTGCCTGCCACACTAACACATATTGTGCGGAACGAAAAGTAGAAGGATTAGGACCAGACCAGAGGTGGATATGTGGCTTTGTGAGCTGCCTTCTGTTGGGAACGACCACATCTTGCTGGGCCCCTGAAACTGAGGGGCCACGACCAACAAACAGAGTGGGTGAGTTGGACAGGTGGAGGACATCGTCTAGCAATACCACCCGCCTTAAATGCACAGCACAGGATGGACCTGCAAGCAGAGAGCCCTGACAAAGACTCTGAAGATGATGCCTTCAAGTGTGGacctgagggaggagaggagggcgagGGCTGGGGGAGCGATAGTCAACCCGAGGCCTGCACCCCTACTCCTCCATCCGCTGGCAAGAGGAAGAAGAAAAGGAAAAAGAGACTGTGGATCAATATCGTCAACTGCAAATATGAAAGTGTGCGACGTGCTGCTCGCAGATATGGCCTTTGGGAAGCAGTGGAGGGCGAGGACTGGACTCTCTTCTGGACAGACTGCTCTGTCTCACTGGACAGAGTTATGGACATGAAGCGCTACCAGAAGATCAACCATTTTCCAGGGATGAGTGAGATTTGTAGAAAGGATCTTCTGGCTCGAAACATGAACCGCATGCTAAAGCTCTTCCCCAAAGACTACAATATCTTTCCCCGAACATGGTGCCTACCAGCAGATGTTTTTTTGTATCTCTGCAGTTATAGTGACTTCCAAGCTTACACCAGGTCCAAGAAACATAAGACTTACATCTGTAAGCCAGACTCCGGTTGCCAAGGGCGAGGCATCTTACTCACCAAGTCCAGCAAAGACATTCGGCCGGGGGAACACATGATCTGCCAGGTGTATGTCTCCCGGCCATTCGTTATTGACGGCTTCAAGTTTGACCTGCGTATCTATGTGCTGGTGACCTCCTGTGACCCCTTCCGCATCTTCCTGTACAACGAGGGGTTGGCTCGCTTCTGCACTACCCAATACAACGAGCCCAGCAATGGCAACGTGGATGATGTTTGCATGCATCTGACCAACTATGCCATCAACAAGCACAGTGAGAACTTTGTCCGTGATGACGACACTGGCAGCAAACGGAAGCTGTCCACCTTGAACAAGCACCTGGAGGCCATGTGTTACGACACAGAGAAGATGTGGTTGGACATTGAGGACGTGATTATTAAGACGCTCATCTCTGCCCACCCCATCCTCAAACACAACTACCACACCTGTTTCCCCAACCACGCGGCCGGCAGCGCCTGCTTTGAGATCCTTGGCTTTGATGTGCTACTGGACCATCGACTCAGGCCCTGGCTGCTGGAGGTGAACCACTCCCCCAGTTTCACTACTGATTCACGGTTGGACCGGGAGGTGAAGGATAGCCTGCTGTATGACACCCTGGTCCTTGTAAACCTGGGTGCCTGTGACCGCCGTAAGAtcactgaggaggagaagcgCAGGGTGAAGGAGAGGCTGCAGCAGAACCGCTCCAGAGAGGCTAGGAGTGAGGAACTGCGTCAGTCCCAGGCAGCCAGTGTAGAGCAGATGCGGAGGTATGAAGCCAAACACCTGGGTGGCTTTCGTGGGATCTACCCCCGCGAGGGCGGAGAGAAGTACGAGAAGTACTTCAAACACAGCAGCTCCCTGTTTCAGGAGACTGCCGCCTCTAAGGCCAGGGAGGAGTGTGCGAGGCAGCAGTTGCAGGAGCTGCGTCTGAAGCAGGAGCAGAAGGAGAGGGAGCAGAAGGGGAGCCGTAGACGAGACTTGCAGGGGGAGTCTGCAGGAGAGAGGGCCAAACCACACAGAGTACAAGTTCGTCAGACCAACTCCCAACAGGTTACTCTCCTGACCATGCCCCTCCTGCCTACTGCTACCAACGGTTCCCCTACGGTGCaggacctctctgatgaggaggtggagagggtgaGTGGACTGCTCCAACGGGAGAGTCTACTGAGGGACCTCGGGGTGGTGGACCAGATCTATAAGCTGTTGCAGGGGAGAGGCCAGTCCATGCCTAATGGCATTACACCCCCCCGTGAGCAGAATGAGCTGCCCCTACACAGACATGAACGAGCCAATAAGTTGGACTCCCTGACTGAGTTCTCCTGGAGACCGAAGCGTCACTGTACTGTGATCCAACACCAGTTGCCTCCAGGGGCCAAGCCCTGCCGTCAGTACGTCCATTCCCAGCTGCTGCAGCAGCGCTGGCCCTGGCCCAGTCTGGACAGGGGGCCCACTCATACTGAGTCTGCCTGCCTTCAATACTACACCCCAGAGGACCACGTCCTAGAGACGGTCCGCCGGGCGCCAGGGGACCTGAGGAGGACCAACAGTGCCCAGCGTATCCCATGGACAATCAATGGTGCTCGCCAGGGCAGTATGAGCTCGTCTTATGCAGAGTCCAAGGCCCGGGCCACAGTGTCAAACATCTCCCAGCTCACGCCTGGACGGCTTCACTGCACCCCCATGTCCTCCGACCCCAAGGCCCTCCAGAGCCTGTTTGTCATCTCCACCCCAGCCCTACTGATCCAGAGGCCCGAGTTCCCCCACCCCATCCGCAAACCCTTGCGCAAAGTCCCCCAGCACGGACAAGGGCGCTAGGGAGCAGGGACGTTTACCAGTCCAGCCATAGTGCCATAAACCACGAGCGGGGCAGAGTGAACAAGCTTTCCTGGCAAAACTGTACACAAGTTGTCCCCGAAATCCTCTCCCTATACTGTGTACATTTCTTCACTTTTACATCATCAAAATGAAATTCATTTCTACATTAGCACTGAGCTACTGAGAATTGattggagagaaatggagaataGATAAATGGAATAGGTCTTATTGTGAAAATATTGAAGCAATGGTGCCTATCGTGACTTAGGTATTGTGTGGTACTTGGTAGGAAGACGTgtcatctcatatgtctacgcAAACACTGTGGCCTTTACAGAATTGAATGTAAGTGAATACTATCTGTGTCTTATCAAATATCTTGGGTTGTTAAATATCACTATAACCACTGAGCCAATAGTGAAAACACGTTTTATTTTAAATAATTCTGGAAATCTGGATGTTTTACTCAGTAATGTGAAGGGAAGATGTGACCATGTAGGCATATAGCAAATTTGTATGACTTTGATTTTGATGACTTTGCTATTATGCTTTGTTATCATATTGATTTTTGTTTAGCTAAGCAGGAAATTCTAATTTTGCAATGGGAACCATAATCAATCATGTGTGCCAAACCTTAGAAGAAAAGCTCAGGATACTGAAATGACCACCAAGCTGGACTAACAAATACTCCTCACATTTCACTGACTTTAATTGCGAATTTACCCACAGTATTTTCATATGGTTATTTTAGATTTGGGATGGGGTGTACATTTACTTATTGAGCATTCTTTTACTTGAGTTGGTGAGAAATATAGACAAATGCCTTCAGAAATGATATGCGTTGATCATTGCTCATGTAGAAATTAGGATATATGTTCAATTCAGGATTATATTGATAATAGTACTAGGCATATTATCAATATATACTCCATATGAATAATCAAATAGTTTCCTAATTTATGTAAATTATTTGGAAATCTTAGATTTGCACATTTGGAGGCCTACAAATTATGAGCGAAATCTTGTATGCAAACTAATATTTCAATGAAAATGTAAGTATATTTTCTTTAACAATGATCTtgtttgattttatttatttttttcatcaagcTCATAAACATTATCGGCCTACTACTGTATTTAAATGGTAATTCGATATGTCGATGTGTTTACATTTTACCTCAAGAATTATTTGGAAAAGTAGGCTTTAATTACAATCGAAATCATTTAACGATATTTTTTTCGATTTGAATATGTGGGCCTTTGTAGAGTTTCGATGCGCGTGAACTCAAGTCTATGATCTCAAGACctatgagctgttgctatcgttGTCATAACAATAGTTTCAGTTACATAGTTAAATTACACAGTTTAGTTATAGTTTTATATAGCTTTCAACACACTTTATCACAATATTTAAATTTCAATAAAAGCACATTCGTTTTATTGTAATCTACAAACACAATAACTCAAGCCCCGTATATACGAATAATGATAGATTTGTAATCGCCAAAATAAAGTAGCCTTTACTTGTCACGCTGAAACAGGCTGCTGATGCTGCACAACATCTTATTATTGACGTCTTTGAATGCCAATTAAAAATATAGGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1542520 lncRNA downstream 14841 18538076 ~ 18538335 (-) True G1349317
TU1542517 lncRNA downstream 19317 18533554 ~ 18533859 (-) True G1349314
TU1542508 lncRNA downstream 23414 18529531 ~ 18529762 (-) True LOC110491505
TU1542506 lncRNA downstream 24767 18528175 ~ 18528409 (-) False LOC110491505
TU1542009 lncRNA downstream 28797 18524179 ~ 18524379 (-) True hoxb1b
TU1542558 lncRNA upstream 3044 18578554 ~ 18578786 (-) True G1349340
TU1542560 lncRNA upstream 3781 18579291 ~ 18579519 (-) True G1349342
TU1542564 lncRNA upstream 8276 18583786 ~ 18584017 (-) True G1349346
TU1542565 lncRNA upstream 8625 18584135 ~ 18584359 (-) True G1349347
TU1542567 lncRNA upstream 9934 18585444 ~ 18585782 (-) True G1349349
XM_036945852.1 mRNA downstream 205 18551195 ~ 18552971 (-) True LOC110492883
XM_021565007.2 mRNA downstream 7004 18543964 ~ 18546172 (-) True LOC110491508
XM_021565006.2 mRNA downstream 9704 18541248 ~ 18543472 (-) True LOC110491507
XM_036946375.1 mRNA downstream 20964 18525208 ~ 18532212 (-) False LOC110491505
XM_036946376.1 mRNA downstream 22664 18525207 ~ 18530512 (-) False LOC110491505
XM_036946381.1 mRNA upstream 20141 18595651 ~ 18602193 (-) False snf8
XM_021565018.2 mRNA upstream 20141 18595651 ~ 18603129 (-) True snf8
XM_036946382.1 mRNA upstream 29475 18604985 ~ 18606174 (-) True LOC118939514
XM_036945761.1 mRNA upstream 47123 18622633 ~ 18625717 (-) False chmp2a
NM_001165070.2 mRNA upstream 47124 18622634 ~ 18626440 (-) False chmp2a
TU1541907 other downstream 129990 18417615 ~ 18423186 (-) True prr15lb
TU1540612 other downstream 1161222 17389385 ~ 17391954 (-) True LOC110491477
TU1540318 other downstream 1357047 17195330 ~ 17196129 (-) True G1347343
TU1539999 other downstream 1623744 16924522 ~ 16929432 (-) False G1347067
TU1542585 other upstream 58521 18634031 ~ 18634405 (-) True G1349366
TU1542973 other upstream 745360 19320870 ~ 19325054 (-) True LOC110491541
TU1543183 other upstream 885531 19461041 ~ 19461815 (-) True G1349896
TU1543843 other upstream 1116182 19691692 ~ 19697658 (-) True LOC110491553
TU1545321 other upstream 1754890 20330400 ~ 20333729 (-) True LOC110491567

Expression Profile