RNA id: NM_001165070.2


Basic Information

Item Value
RNA id NM_001165070.2
length 1643
RNA type mRNA
GC content 0.40
exon number 6
gene id chmp2a
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 18622633 ~ 18626440 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCGGAAGTatgtgaaagaaaacaaataggTAGACTATTCCCGAATTAAAACCTTTGAAGACCTCTCAAACAGTATTTTCATTATCGTGACATAAACAGCCACACGAAAGACCTCATACACGATGGAGTTCTTGTTTGGGAAGAGGAAGACCCCGGAGGAGATGTTGAGGCAAAACCAGAGGGCACTGACTCGGGCCATGAGAGATCTGGACAGAGAGCGACAAAGACTGGAGCAGCAGGAGAAGAAAATCATAGCTGACATTAAGAAAATGGCCAAACAGGGACAGATGGATGCTGTGAAGATCATGGCGAAGGACTTGGTTCGTACAAGGCACTATGTGAAGAAATTCATTATGATGAAGGCAAATATCCAAGCAGTCAGCCTGAAGATCCAGACTCTAAAGTCAAACAACAGCATGGCACAAGCAATGAAAGGTGTCACCAAAGCAATGGCTACCATGAACAGACAGATGAAGTTGCCACAGATTCAGAAGATCATGATGGAGTTTGAACGACAGAGTGAGATCATGGACATGAAGGAGGAGATGATGAATGATGCCATAGACGATGCCAtgggtgatgaggatgatgaagaAGAGAGTGATGCTGTTGTGTCCCAAGTGTTGGATGAGCTGGGTCTCAATCTCTCTGACGAACTCTCAAATCTGCCATCCACGGGTGGTAGCCTCTCCGTAGCAGGTGGGAAGAAAGCTGAACCCCAGCCAGCCCTGGCAGATGCAGATGCTGACCTTGAGGAGAGACTGAATAACCTCAGGAGAGACTGAGTGTGGAAAAACTGGCACGCAACAGCACTTTGGCAGCCTGGCGTTTAATACAGATACACATGTACTCAGCAACTCAAATCTCTGTACATAGATTTATTTGGGTAACACTGGAGGGTTTCAGTGAGAAATCTGTTATGGTATATAAGCTTTTTTGTTGCAGGTATTATTTTTTTGCTTGCAGTATGTTATCTTTAATCAATGACGGATCAGAATCATTATCCATACAATTGTTCTCTTAAAAATATGAAGCATTCTCTTTAGGGGGTATATTTTAATGGCGTTTAAATACACCAGAGGCATGCATTACACTCCTTGGGTAAATTGAACACTATATTCACTTTAAAATCATTAGACTATCCTATTAAAGTAAACATTTTGTATATTTGATGTACAAGTATCATTACATTTGTACATAATGTCAACTTTTAGTGGTGTGCAGGCATACAGTATACATTGCCAGATAACATTAACATGATTTAGTAAGGGTTTTACTGTTTGTTACTTGCTTGCTTTTTATTTACTTGGTGACTTTGAATAACATAAGGATTCAGAGGTTTCAACAGTACCATTATCGTAACGTCCTTTGTGAGTTAAATGGTTTCAACAAAAATACTTAAGTGGGGTAAAATATGTCTACTGTTTGGCAAATGTTTCTCCATGTCAAATGTCCAAAAAGAGGGCACTCACTTGATGGTGCCTGGTAAAACTGAAATAGCCTTTTTTATCCTAGGACTGTTGTCATTGAGTTGTCATGATAATCAATGTAATATTTATCGAAAGGGTGATGGAAGGTGTGGTGGTTTGTATAAGAAATTCATATTTTGCCTTTattcaataaacatttttttttacatttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1542571 lncRNA downstream 870 18620498 ~ 18621764 (-) False G1349353
TU1542572 lncRNA downstream 870 18621444 ~ 18621764 (-) True G1349353
TU1542511 lncRNA downstream 27025 18594183 ~ 18595609 (-) True G1349308
TU1542567 lncRNA downstream 36852 18585444 ~ 18585782 (-) True G1349349
TU1542565 lncRNA downstream 38275 18584135 ~ 18584359 (-) True G1349347
TU1542519 lncRNA upstream 700 18627140 ~ 18628682 (-) True G1349316
TU1542584 lncRNA upstream 7067 18633507 ~ 18633849 (-) True G1349365
TU1542586 lncRNA upstream 8036 18634476 ~ 18634762 (-) False G1349367
TU1542587 lncRNA upstream 8036 18634476 ~ 18634888 (-) True G1349367
TU1542588 lncRNA upstream 8829 18635269 ~ 18635891 (-) True G1349368
XM_036946382.1 mRNA downstream 16460 18604985 ~ 18606174 (-) True LOC118939514
XM_021565018.2 mRNA downstream 19505 18595651 ~ 18603129 (-) True snf8
XM_036946381.1 mRNA downstream 20441 18595651 ~ 18602193 (-) False snf8
XM_021565011.2 mRNA downstream 47124 18553176 ~ 18575510 (-) False ttll6
XM_021565026.2 mRNA upstream 45901 18672341 ~ 18679390 (-) False LOC110491515
XM_021565025.2 mRNA upstream 45906 18672346 ~ 18679346 (-) True LOC110491515
XM_036946395.1 mRNA upstream 131127 18757567 ~ 18764892 (-) False LOC110491517
XM_036946396.1 mRNA upstream 131127 18757567 ~ 18764892 (-) False LOC110491517
XM_036946394.1 mRNA upstream 131128 18757568 ~ 18764892 (-) False LOC110491517
TU1541907 other downstream 199448 18417615 ~ 18423186 (-) True prr15lb
TU1540612 other downstream 1230680 17389385 ~ 17391954 (-) True LOC110491477
TU1540318 other downstream 1426505 17195330 ~ 17196129 (-) True G1347343
TU1539999 other downstream 1693202 16924522 ~ 16929432 (-) False G1347067
TU1542585 other upstream 7591 18634031 ~ 18634405 (-) True G1349366
TU1542973 other upstream 694430 19320870 ~ 19325054 (-) True LOC110491541
TU1543183 other upstream 834601 19461041 ~ 19461815 (-) True G1349896
TU1543843 other upstream 1065252 19691692 ~ 19697658 (-) True LOC110491553
TU1545321 other upstream 1703960 20330400 ~ 20333729 (-) True LOC110491567

Expression Profile