RNA id: XM_021565026.2


Basic Information

Item Value
RNA id XM_021565026.2
length 2463
RNA type mRNA
GC content 0.43
exon number 11
gene id LOC110491515
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 18672341 ~ 18679390 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGTAGGTGGCGTAGCTCAATGTGTTCTAATGTgggctgtctttctctctaacaTCCTAAAGGGAAGACTAGTTTAGCCGTGTAGATTACTTGTTGAATGACACAAGCACCAAAGTTATTTTTGTGTATGTTTTATTGCTCATTTGTTCCAATTTTTCTTCACCTTGATATAGGATATCGTAGTAATACATTGCATTTGGACTGAGAAGAAATGCGGGACCGAACCAAGGAACTGGGCAATACTGCCGAGGTGTCAGACGAGGATGAAGAGGGCAGGGCACTTATGATCAAACCAGGGACTTCTACagtgagggaggagaaggagaatgaTGCATTTTTCAAGAAGGTCCAAGAGATTCGAGAGGGACTGGAGACGCTTAAAAAGGTGGTTTCTGACCTTGAGAACAAACAGAAGACCGTGTTGGGTGTGGCACTGCCAGAGGACGgcatgaaaaggGAACTCCAAACCCTTCGGGAACAGATCAAAACAATGGCAATGCAGATCCATAAGAAACTGAAGATCATTGAACCCAAGAAAGGAGAAGATGATGGGAAATACATCCCCATAAACCTAAGGATGCAGAGAGCCCAACATGGCGTCTTGTCTCGGGAGTTTGTGGAGTTGATGGGCCACTGTAACACCATCCAGGCTTCCTACAGAGATCGCAACGTGGAGAGGATACAGAGGCAGCTCAGAATCACTGGCACCAATGTAACAGATGAAGAGTTGGATGTTATGCTTGAAAGTGGACAGACTGATGTTTTCACACAGAATATCCTGATCGACGCTAAAGCCACTAAGCAGGCGCTGAATGAAATTGAGTCCCGGCATGACGAGATCCTCAAACTGGAAAGGAGCATCAGGGATCTGCATGACATGTTCCAGTACCTGGCCATGGAGGTGGAGGCTCAGGGGGAGATGGTCAACCGCATTGAAGCCAACGTCCTCAACTCAACTGATTATGTGCAGAAGGCAGTGGTGGAGACCGAGAAAGCTGCCACCTACCAAAACAAAGCACGCAAGAAGAAGATATGGATCGCGTTATGCTGTGCCATTCTCCTCCTCATTTTAGCCATCTCATTGGCGATCACCTTCTCCTGAGATCCAGACACTGTCTTCCCTTGACCCACTCTCCTGCCCTGGGACCTTGGAAAAAAAGACATGTCCTGTCTTACTGATATCACTGAACTTTTGACTAACACCACTCGCATATAGACAGACACAAACAATCATAGTCTCTCATGTTAACAGCCCCACTCTCAGCGAAAGGCCATGCTGAAGGCTTTTTGGCCCCCCTCTGTGGTGCCCTTTTCCATTTAGGATGCCATTGAAGAAATGTGTGGACAACTCATTACTCAACGTGCTGGACCCCTATGTATCCACAAGCACGGAAGAATGCAGTATTGGAACTGGCACTGATCTGATTTACTCAGGAAAAACCATAGCTAAGGTGGTTATTTTACGAAGTGAAAAACTTTTTAGGGCTTGTTTTTAAATGCAGATATAGAATATAATTGTATATCGCCCATTTTCTTATTTGTTGAGTAATTAAGACATTAAGGCAGTTTTATAAACCTTTCGAGATGTCTGAACTGGCTTCCATGTTGCCCCTGAAATTGATCTCTCATTAAGACTATATTGTCTGATCACTACAATGAATGGCCCACTCCCATGTTGTCCTATTTACATCAGTATTTATTTATAGTTTGAATATTGTTGTGGAAGCTGCTATTTTAATAGTCTTGCCACAGCAACAATCAATGGGAATCCTTATGGTTATGGTGCCTTTTTCCGTATGTGCTGACGGACAGCGCCAAGGGCTAAGAACAATGTAGTGTACTACCTTATTTTGTAAAGAAGGGATGGAAACTGCTGTAATTATTCAATGCTTCCGCTTCAACGCATTACCCATTTTTTTTACATCTGTATTTTTTCCAAACAGTTAAGATCTTAGCCTTATTGAACTGTGCTGACATCACAAAAATGGGTCAGAAGTCTGTGTGTAGTGAATCTGGATGGCCAGagagctagcaacaatgacaagctgCCATGTGAGGAATCGTAGGTGCTTGTTCAAGTGTTGTTTTGTCCATGCTGACCAACTTAGTTCCTAAGGAAATCAGTGAATTTAAATGAATGCATTTcacataccataaccccagcacaaggtgcacctgtgtaacgatcataTGTCAACttttaggtggatggattatcttggcaaagaatactaacagggatgtaaacaaatgtgtgtacAACATTTCAGAGAactaagctttttgtgcatatggaacatttgctGGGGTCTttattttcagctcatgaaatatgggaccaacacgttGCATGGCTGTTTAATTTTGTATAGAACTTTCAGCTCATTTTAATGCATTGTTCAAATAAAGTTGCCTTCTGTGCTTGTATGGGTTTAACTGTTGCCCAGATTCAAGTTTGTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1542599 lncRNA downstream 16833 18654874 ~ 18655508 (-) True G1349378
TU1542588 lncRNA downstream 36450 18635269 ~ 18635891 (-) True G1349368
TU1542587 lncRNA downstream 37453 18634476 ~ 18634888 (-) True G1349367
TU1542586 lncRNA downstream 37579 18634476 ~ 18634762 (-) False G1349367
TU1542584 lncRNA downstream 38492 18633507 ~ 18633849 (-) True G1349365
TU1542659 lncRNA upstream 65839 18745229 ~ 18782372 (-) True G1349431
TU1542706 lncRNA upstream 118471 18797861 ~ 18799342 (-) True G1349460
TU1542708 lncRNA upstream 122957 18802347 ~ 18802617 (-) True G1349462
TU1542712 lncRNA upstream 130121 18809511 ~ 18809746 (-) True G1349466
TU1542713 lncRNA upstream 130529 18809919 ~ 18816027 (-) True LOC110491520
NM_001165070.2 mRNA downstream 45901 18622634 ~ 18626440 (-) False chmp2a
XM_036945761.1 mRNA downstream 46624 18622633 ~ 18625717 (-) False chmp2a
XM_036945762.1 mRNA downstream 46698 18623230 ~ 18625643 (-) True chmp2a
XM_036946382.1 mRNA downstream 66167 18604985 ~ 18606174 (-) True LOC118939514
XM_021565018.2 mRNA downstream 69212 18595651 ~ 18603129 (-) True snf8
XM_036946395.1 mRNA upstream 78177 18757567 ~ 18764892 (-) False LOC110491517
XM_036946396.1 mRNA upstream 78177 18757567 ~ 18764892 (-) False LOC110491517
XM_036946394.1 mRNA upstream 78178 18757568 ~ 18764892 (-) False LOC110491517
XM_021565029.2 mRNA upstream 78182 18757572 ~ 18764700 (-) False LOC110491517
XM_021565031.2 mRNA upstream 78182 18757572 ~ 18765534 (-) False LOC110491517
TU1542585 other downstream 37936 18634031 ~ 18634405 (-) True G1349366
TU1541907 other downstream 249155 18417615 ~ 18423186 (-) True prr15lb
TU1540612 other downstream 1280387 17389385 ~ 17391954 (-) True LOC110491477
TU1540318 other downstream 1476212 17195330 ~ 17196129 (-) True G1347343
TU1539999 other downstream 1742909 16924522 ~ 16929432 (-) False G1347067
TU1542973 other upstream 641480 19320870 ~ 19325054 (-) True LOC110491541
TU1543183 other upstream 781651 19461041 ~ 19461815 (-) True G1349896
TU1543843 other upstream 1012302 19691692 ~ 19697658 (-) True LOC110491553
TU1545321 other upstream 1651010 20330400 ~ 20333729 (-) True LOC110491567
TU1545473 other upstream 1960836 20640226 ~ 20646198 (-) True LOC110491585

Expression Profile