RNA id: XM_036946395.1


Basic Information

Item Value
RNA id XM_036946395.1
length 4409
RNA type mRNA
GC content 0.42
exon number 7
gene id LOC110491517
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 18757567 ~ 18765534 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGGGTGGGatgactgtggtgtgtgtgtgtgtgtgtggccgagGAGGACCTGCCTTCTCCCTCATTCTACTACGTATCAGCATCCCCTTACAAATAGGGCTGGGTCTGTTATCAGTGGATCTGTTGGCAGTCTTGCGTACTGCAGCTGAGCGCAGAAGGATTGGCTTTATTGCACTAGAGGGAACAaagTTCCTGTTACACCGGTTGATAGTCGTCGCCAGCCTCCCCCAGCAACTCGCAGACAGGAAAGACCTGGGAGTACACTACGAAGAACTGAACCAGCGCTTGCAGAGGTATTACCAAGGAGATGCTATCACAGGCCTGCTTTTGCTGTACCCAACCTGCATGCTTCATGTCATTGAGTCCTCCAGCGAGGTTCTTGTGTCTCTGCTGCAGGATCTGAGGGACATGCAGGAACAGCCACACTGTGTCCTGATCGAGGCGCCCAGGGTCCTGGTGATGTCACATGACCTTCCCAGCAGGTTGTTCCAGCAGTGGAGTTACAAGGTGCTGAATGTGCCGGCCAGGGTGGGTGGGATGCTGAGTAGAGACGGgctagagaaggaggaggaggaggacaccgACACACTGGTCAGCACCGCCCTGTCTATGCTGCTCAAGCTGGGGAATCACCTCCTCAAAGCCACCAAGGGGTCAAAGATGCCTCTGGGCTCTGTTCTGGATGCAGTACCAGAGATGATAGTCCCTCAGGATATTCTGGTTCAGCTCCTGTCCAGAGGAGACCTTCTGAGCCCCCAGCAGTACCTGCAGGCCTACCACACCCCTCTCCACATCCTCATGGACTCTGGGCACGCGTTTGGAAGCAGTCAGCTAACTACAGTTTAGTGTTTGGCCAAAAGGTCAAAGGTATGGGTGTGTCAGCATGTCAAATGAAACCAATGCATGTGGTTTGAACCCAGAGAATAACATTGCATGCATCATCTCAAATTGGATCTGCATGACTTTGAATGGATTGTATCTCTCTGAATGAAGGATATTTTGATTCCGGCACAGTATATTCCTTTGTACGCAAGGGATCTTGAGGTGTTGCTGTGCATTTGAATCGTATTCCTTGTCTTTGTCTCGTGTTCTTGTCCTTGACCAAGGCCTCTGCATGTAGGCTTTGACATAGGGATCTATTTTGTGGACACTGTCAGTTAGGATGATTCACACGTTTGATATTATTTCCACAGAGCGTACTTGGCCTCCACCTGAGCAACTTCGATGTGAATTCTGACTTCTGATGTGATACAACTAGACATTTGAATGTGCTTCCTACTCAATCTGTTTTCAGGGTTCATATATTGAGAACTGCCATTCATCTGGACTGTGTGACACATTCAACTCGAAATAATTGTCCTTGCTCCACAAATGGATACTACATAACAAGATACATTGTTTGATACTGTAGTGTTAAAATACACAGGGACTGCAGGGTAGGTTTGGTTGTATATTGCAAATATTTCATAAATATTTTACTGGATGTGAACTGGCATTGGATGTATTTTCTTTCCTGTGTATATACTGTCACACCCACGCCATACTCACAATAAGGCATGATTAaatacacataaaaaaaaaacattttttaatagTTTCAACATTCTGATGAGCATTGTTTTTGATCTTACAGGACATGTCCACAGTAGTTGTTCCACTCTGTGACTGGGAGGGAGTATGTCCCCTGTCTTTATTTGACTGTCCCCAATGTCACTGCAGTTTGACATAGTACTGTAGAGCCGTTATATCTAAAAAGCAACGTCTCTGGAGCCTCAATCTTCCGTTTTATTTTGACCCCCTTGTGTTAATTTATTACTTGAACATAAACTATGCAAAAAGATTCATTAAAATGTACTTTCTTACCAAACAATAGCTGCATGCACCACCGTGTCATAACTTACAAATGTTCAGAGGCAAACCAGGTGTGTTTTATCCCACATTTATTCAGGCTTGGCTGATTGGCCAACCAAAAAAGGTGTATCTTTGTTTTGCCTAATATGAAGCAGGAGGGTTTTTTCATCTGATGGATAATGGGATTGATTTATGCCCATATAAGGCTATCCTCAGAGAATAACTCAATGTTTGCAGACAAAAAGAAATACACTGCCAGTCATCCATTCAGTGTCACTGTCATTCTGTTCCTGACTCATTAGGCAAAAAAAGCTAGAAGTTAGATGCTATATTGTCTCCGAGTTGTATTAAGTCATTAAGTTTGGCAATTATTAAGCCATGCTTCTAGATGTACAGTACTTCATATATTTATGTGACTCTGCTTGGTGAATAGTTGATTGACTGGATGAAAAGTTGGAGCTCAACAAAAATGCAAAACAGGAACTGTGGACTGATAAACTGATAGGGCAGAACTGAATAATTCTACCTGCATTGCAAGGCCCTTTTTCTTTTCacatataaaaataaatatgacAAGCACAGGTAAATAGGACCAAAGGTAAGACAAATTTCACAAGCATGATGACAAAGCATGCTGCTGATTTTCACACGTGGGACAATGTCTAGTCATAACCCCCAAGCCTATTCACATCACTACCAAACATCTGTCCATCCTGTTAAAACTACATCCACAACACAGAGAATTCCccctaaaaacaacctgaggcaAACAGTCCAAATAGTCACCAGTACATTCTACCTATTCATTTAAAAAAGGCCTTTTCTCTTACAGTAACTCAACAGACATGCTTAGAAAAACTGTAACAGTGGAAATAGTTTGAGGAATCTCTCTTACCAACAACTGCCCTTGGTACACAGGATTTCTGCTTTTAATAAAGTTGTGTGTTCAATAAATATGTACAAACCATCACTTCATAAAAAGAAGACAACCCCTTTTACAGAACAGCAACAGAACAGCACATTATCACCACAGACAGAAGTCCAGATAGACACATAACCGAACATTCACTTCAACATCCAAATTGTAAGAACAGCCTTCAAAAATGTTGATGCAATTTTGTctattttataattttttgaaTCCTCAAAATCATATGCCATGGTTGGCATTTGTTGCAAGTAACGATACAAAAGACAAAAGCAATAAAACATCAATATAAACTGTAAAAAACTTCAAATCATTTTAAAGAGAGTGGGACCCCCTTCATCTTTGAggtttctctgtttctgtgttCACAAATACTGTAATTGCACTTTCTTTTATCATTTTGAACTTCAACATTTTTCTTCTGGAATTGTCTACTCAGCATTGCGTTGAACTATATTGCTTTCAGGGGAGGATATTTGTCTTCTACACTGGGGAATATACTCTGTACTGTAAGGTTGGAATAACTAGGTTGACTCAACCGTTTTTTTGCCTCGTAGGGATGGTGGTCCCCTTCTAACTTACCTATTGACAATCACAAATACATCCCTTACAATAGCTCTACTGGTCAGGCTGTCGACTAGTGGAAACACACAGTGACGCAGCACTTTCCATTCAGACATGCTGTATTATTAAGCTCCCGGCTGATGACTCTGCACTAACAATCCTAGAAAATAGATTTAACCTTTAATCTATGTCCGTGTTATATGGTACTATTTAAAGCTCGCGGCTGATAACCGTGCAAAGCTTTACTGCATTTCGTTAAGTGTGAATCTGGCAATATTGTGGTCAGGACCAGAACAACACGGACATGTCAATATACAAATACTTTCAGTCAATATTTATATTTCTCTTATCTTAATATATATTTTATCCTCTCCCCCtgttttatatacacacacatatacagaggCGTCAGTATTTACAATAGTGTTGTTATGGATAAAATATATAGCACTTGAACATAAGTGCATGAAAGGGCAGCGTTTGTTGTGGCTTCCAGGCAATAATCAGTGTTATGGATGGAACATTTCTAAGGAGAAAAAGTCATAGGTCTGTATAGGTCATGGGCGGGCGCCTGACCTTTGAACCCCAACACCGGATAAACCGATTGGACCATTGGTCTTTTGTGCTGTGGATGTCAATCCAACTCCTCTGCACCGTAATCATCGGTATACAGTAAATACTTTCATCACAATAAGAAATACTTCACATTCCTCATTGTGAAagtattgttttttttaattgtgTGGTGGGGGGACTGAAACTGAAACCTCTGTATCATTTCAATGAGAGCCTATTCTCATTCGCCGTATGATAGAATATAAACGTATATTCTAGCACCAGAAGAAATGTACCTATATTCCGgattacacccacacacacaggcacagaactgcacccatatacacactcactctcaGAAGAGTTTCCAATATTTGCTTTCAAACAGCTGAGCCGGCTCCCCAGTGACAGGCTCTTGCCAGAGAAGTCTCAGGGCGCTCATTAACAGAGTTacagagaccacagagaggaggtATACAGACAAAGGGtgttaatttgagccagtttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1542599 lncRNA downstream 102059 18654874 ~ 18655508 (-) True G1349378
TU1542588 lncRNA downstream 121676 18635269 ~ 18635891 (-) True G1349368
TU1542587 lncRNA downstream 122679 18634476 ~ 18634888 (-) True G1349367
TU1542586 lncRNA downstream 122805 18634476 ~ 18634762 (-) False G1349367
TU1542584 lncRNA downstream 123718 18633507 ~ 18633849 (-) True G1349365
TU1542706 lncRNA upstream 32969 18797861 ~ 18799342 (-) True G1349460
TU1542708 lncRNA upstream 37455 18802347 ~ 18802617 (-) True G1349462
TU1542712 lncRNA upstream 44619 18809511 ~ 18809746 (-) True G1349466
TU1542713 lncRNA upstream 45027 18809919 ~ 18816027 (-) True LOC110491520
TU1542720 lncRNA upstream 52146 18817038 ~ 18821214 (-) True G1349473
XM_021565026.2 mRNA downstream 78177 18672341 ~ 18679390 (-) False LOC110491515
XM_021565025.2 mRNA downstream 78221 18672346 ~ 18679346 (-) True LOC110491515
NM_001165070.2 mRNA downstream 131127 18622634 ~ 18626440 (-) False chmp2a
XM_036945761.1 mRNA downstream 131850 18622633 ~ 18625717 (-) False chmp2a
XM_036945762.1 mRNA downstream 131924 18623230 ~ 18625643 (-) True chmp2a
XR_002468844.2 mRNA upstream 45024 18809916 ~ 18816182 (-) False LOC110491520
XM_021565037.2 mRNA upstream 58727 18823619 ~ 18852922 (-) False acsf2
XM_021565038.2 mRNA upstream 58727 18823619 ~ 18853128 (-) True acsf2
NM_001124243.1 mRNA upstream 98130 18863022 ~ 18875578 (-) True tap2t
XM_021565040.2 mRNA upstream 115510 18880402 ~ 18888616 (-) False slc16a5a
TU1542585 other downstream 123162 18634031 ~ 18634405 (-) True G1349366
TU1541907 other downstream 334381 18417615 ~ 18423186 (-) True prr15lb
TU1540612 other downstream 1365613 17389385 ~ 17391954 (-) True LOC110491477
TU1540318 other downstream 1561438 17195330 ~ 17196129 (-) True G1347343
TU1540000 other downstream 1828135 16924522 ~ 16929432 (-) True G1347067
TU1542973 other upstream 555978 19320870 ~ 19325054 (-) True LOC110491541
TU1543183 other upstream 696149 19461041 ~ 19461815 (-) True G1349896
TU1543843 other upstream 926800 19691692 ~ 19697658 (-) True LOC110491553
TU1545321 other upstream 1565508 20330400 ~ 20333729 (-) True LOC110491567
TU1545473 other upstream 1875334 20640226 ~ 20646198 (-) True LOC110491585

Expression Profile