RNA id: XM_021565061.2


Basic Information

Item Value
RNA id XM_021565061.2
length 4323
RNA type mRNA
GC content 0.53
exon number 5
gene id LOC110491536
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 19164692 ~ 19210407 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAATATCTTATATTGAAGGTCACTGTCGATGGTTCTGAGAGACTGTTGTTATTGTCAGGAAATCTTATAAATGTCCACTTGTCTGTGTTTCACTGCACATTCAGCATCTAAAAAACAGCAGTCGTAGACAAGAGACCCATTCTTCAGTTCACTGGTCATCACATTACTTCAGCCAGTGGTGGTGAAGCTATGGTTGGCAGCCAATTGGGGGCTGGGCTCAGAGTCAGACGGAGACGGAACGGGAATTTTTCTACAAGCATCTGACCTGAACAGTGTGCTGGAGCGCTCACATCAAAAACACGCGCCATCGCTATACACAAGGAGGAAGACACGGAAATTCTACACTCGAAAAATCGTTTTCGGCTACAAATTATAGATTCAAAATTAGAACACCCGCGCCAAACAGTTTATAAAGAATTTACTTTACTGTCAACCTCCTCCTGAGCTGTGCATCGAGGCTTTTCATGATTGTGTGGCTGTCCCACTGAGCAGCAGCCGCCATGGCCCTGATTCAGGCTCCACCCATGCCGGCTGAGCGTCACCACACCCCCGGCCTCAACGGATCCCCCCGCCGCCACCCCTCTGCCTCCCACACGCCCACTAACCGCCCCTCCACCTCACCCGCCTCCAACTCCCAGGAGGCCATGGGCTCCGTCAGCAGCCTCATCGCCCACCGCCCCGGCCCGGCCTACCTGGAGTGTCAATACCGGCCCGTTGATATTGGTCCCGAGCCGGGAACTTCCAGGCTCCACAGAACCACATTGGGGGCCACTTCTTGCCTGGGCTCCTCTGACACATCCCAGGATCCACTGCTCAGTAGCCTCACTCCGCCTGGCAACAGAAAGCCCTTGATGGTGATTGGCTCCAGTAAGGACAGCGGGACCAATGGGAATTACTCGTATCTGAACCAGCACTATGTGGGGGACTGGAATGACAACCATGTGGCTAACGGAAGCCCAAGGACCGGGATTGACACTGAGGGGCAGCTGGGGAGCCTCAACGGGAATGTAGGAGGAGCCCCGCCCAAACTGGTCCTCGTATCGGGGAAGCTGGAGAAGAACATGGAGAAAACAGTAATCCGGCCCACCGCCTTCAAACCAGTCATCCCCAAGAGCCGCAACTCCATGCAGTACCTCTCCCCTCGCCATGACCGGGCCAGCCTATCAGACAGCCAGAACAATCTCAACCTGTTGTCACCTGGTAGCCAGACGGACATTCTGTCGCCCTGCTCGGAGAAACGCACCTCCCACAGCGGCGGGCGCCACGTGGGCGGGGGCAGTCAGACCTGCTCCATGTCTGACTCGGGCCGGAACTCCCTGTCGAGCCTGCCACCTTATGGCAGCATCCCCTACAATCTGCCGCCCGCAGACACCCCGCTTGGCAGTGGCCACCTAGAGCCCATGAAGACGGCGCCCGGCAATGTGCACGGGCACTCCAACTCGGATAGTGGGCGCTCCTCGTCCAGTAAGAGCACAGGGTCGGGGTCGCTGAGCGGGCGCGTCCAGCCTCTGTCGGACAGTGGGTCGAGCGGGCGGTCGCCAGCCCCCGTGGAGGGGGGGTACGAGGGGGTGGTGAGGGACCTGGAGGAtaagctgagggagagagacgtggagCTGCAGCAGCTCCGAGACAACCTGGACGAGAACGAGATGGCCATTTGTCAGgtGTATGAGGAGAAGCAGAAGCGCTGTGAGCTGGAGCTGGAGGAGCTGCGTCAGACCTGCGCCACACGGATGCAGACACACTCCCAGAAGGCCCAGCGTGCCCAGCAGGTGCTCCAGCTGCAGGTCTTCCAGCTGCAGCAGGAGAAGAAGAAGCTCCAGGAGGACTTCAgccagctgctgcaggagaggGAGCAGCTGGAGGAGCGCTGCACCTCTTACGAGCATGAGAAGATCGACCTAGGGCCCCGGCTGGAGGAGACCAAGTGGGAGGTGTGTCAGAAGTCTGGGGAGATCTCCTTGCTGAAGCAGCAGCTGAAGGATGTCCAGGGGGAGCTGGCTCAGCGCGTGGGGGAGATTGTCTCTCTGCGTGGCCAGCTTCGGGACTCCCGTGGCGAGCTCGCCACAAGCCAGGCCCTGCTACAAGAGGCCACCTCTGCCGGCCTCCTGCGTACCCTGGAGCTGGAGGTGTGCCAGAACGAGCTGCAGCGCCGCAAGAGTGAGGCCCAGCTCCTCCGCCAGAAGGTGGGCCGCCTGGAGGAGGAGACGGCCCGCCTCCGCCCTGACGCCGCGGCCAATCAGACAAGCCCCCAGGCCCCCGCCCACAATGGTAGTGGAGGCAGGCAGTGCCAGGCCTTCCCTGAGGGGGAGGAGCCACATTTGTTGACCTATGAGAGCGACGAGGCCAAGGCCAAGCGGGCCTATGAGAGCGAGGCCCTCCAAAGCCTCCGGGTGCAGATGGAGAGTCTGAGGGCGGAGTTAGCCACAGAACGCCAGCGGGGGGAGGAGCAGGCGTGCAGCTTTGAGGAGGAGCACAGGGTCTGGCAGGAGGAAAAGGACAAGGTGATCCAGTACCAGAAACAGCTGCAGCAGAACTACGTGGGGATGTACCGGAAGAACCGGGAGCTGGAGGGAATGCTGCGGGAGCTCAGTCTAGAACTGGAGACCCGGGACGAGCTGGAGGAGCAGGACGAAGGCAGCGGCAACGAGATCAACTTTGACGAGATCACCGCTACTGAGATCTGACACCaccaccttctctctctgtgtgtctccctctctctatccgccATATGCATGTGATCCACTAGGAGCATCTACAGGAAGCCAAGAGAGCCTCTATAATTGCTTAGTAGGTCACTTCAGAATCCTTCAGTAGGTCTCCATCAGGGTCAGTATGGTATGTAAGCAGTCTTTTTATAGTTGGTCTACTCTGCCTATGTTCCTGCGCTTCCACTTCGTCTTATTATGGTTGACTCCCTCTGGCTAATGTcgacgcacgcgcacacacacttccacaaaagaatgcgcacacacacacacagcggctgTTTCTAGTCTATATTTCAAAATGCAGTTGGAGCATGGACATTCTAAGCAGATATGACTCATTTGGTTTGTTTCCTTACCTTTTTAAGATTAAGCTGGGCTTATTGTGTTAAATCTAATAGAAGACTACCAACATCTCTAAGACCTTGATATTAAGCACACTAACGTACCACTGCGACAAGCAGCTTTGGAGGGTTGAATTTATTGGGCCTTTCTGGAACTGGAGCAACCCAATTTCAGCCCTTATTGGCTTTAAATCGTACAAACGCAGTGTGATCTGATGTGACAGTGGGGGAGTACGCTGACccgggagagtgatggagtcagaTGAGTCTTGTACAGCGTGGAGGAGATAAATCCTGTCTTTCTGTGGTATTCACTGAACATCATGTAACTCCTCCTATTCCCTAGAAATGTGTCCTTCCTCCTTATTCACTGTGTGTGTTCTTGGGAGGTAGAGCCTGATAACACTTTTCTTCTGAGTGTTCTCAAATACAACAGGTtcattggcaaaaaaaaaaagaagggaaGCGCTTCAATGTTACGATTACCAAAGGTCTCCTCATTCCATGACATATTTGAGTATCTAAATATGGACATTAGTGATCTCGAATTtccctattacacacacacacacatgatgtcATTTCATTCGGAATCTGCACAGTATCTTCAGCGAGCAAAACGGACACTGTGgaaattcaaaaggaaacatGTTATTAAAGCACACTCCGATATGCTTTCTATTGTTGTGAAGATAATCTGCTTTCCCTTTTTGTGATCTGTCTCTCGCAGAAGTACAATAGCATGGATGGATTCATCTCTGTGGATCGTTGTTTCTCTGAAAATATTTGTATGCAGCTCTGGCCGTTTTGTGAACGTGCTTTTTGTACAGGTGAGAGGAGCTTGGTCTTTTATAAAGTCAAATTAGACTGGCCAAACTATGACTGTTATCTTTTCAAATTCTGTATAAAGAAGTACACCCATTCACAAAAGAAAGACACTTACTGTAAATGTCCCCCATATCGCTGTTAACCCTTCATTGTAGATATCCCTAGTACTGACAAATCACATATGGGGAAATATAGATATGATCTATTTCAAAATAAACATAGCCACTGTGAATAGACCAAAGCAATGTCCCATGTCCTGTTGGGTCCTTACAGTACCATGTCTGCATATTGACGTTTGAGTGAATGCCCCTTCCATGGTTcaatattccatttttttttaatccacaGTATTTGTATGAAGACATTAAATGTATATTTTCATGCTGTAAATGTATTGTACCAACTGACTGTTTTTAATAAAACCATTGATAAAAACGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1542889 lncRNA downstream 15677 19111473 ~ 19149015 (-) True G1349624
TU1542839 lncRNA downstream 58201 19105449 ~ 19106491 (-) True G1349580
TU1542858 lncRNA downstream 99976 19059912 ~ 19064716 (-) True G1349597
TU1542826 lncRNA downstream 134813 19029678 ~ 19029879 (-) True G1349569
TU1542825 lncRNA downstream 135436 19028408 ~ 19029256 (-) True G1349568
TU1542978 lncRNA upstream 11663 19222070 ~ 19222294 (-) True G1349700
TU1542923 lncRNA upstream 29982 19240389 ~ 19240934 (-) True G1349647
TU1542921 lncRNA upstream 30716 19241123 ~ 19242543 (-) True G1349645
TU1542996 lncRNA upstream 52952 19263359 ~ 19263595 (-) True G1349718
TU1542998 lncRNA upstream 55782 19266189 ~ 19266436 (-) True G1349720
XM_036946413.1 mRNA downstream 38657 19107039 ~ 19126035 (-) True LOC110491529
XM_036946407.1 mRNA downstream 142037 18955532 ~ 19022655 (-) False LOC110491528
XM_021565062.2 mRNA upstream 22544 19232951 ~ 19239241 (-) True twnk
XM_021567323.2 mRNA upstream 33703 19244110 ~ 19279335 (-) True sema4gb
XM_021565071.2 mRNA upstream 100563 19310970 ~ 19325094 (-) False LOC110491541
XM_021565076.2 mRNA upstream 129919 19340326 ~ 19342139 (-) True LOC110491543
XR_002468846.2 mRNA upstream 201111 19411518 ~ 19432319 (-) True LOC110491545
TU1542585 other downstream 530287 18634031 ~ 18634405 (-) True G1349366
TU1541907 other downstream 741506 18417615 ~ 18423186 (-) True prr15lb
TU1540612 other downstream 1772738 17389385 ~ 17391954 (-) True LOC110491477
TU1540318 other downstream 1968563 17195330 ~ 17196129 (-) True G1347343
TU1540000 other downstream 2235260 16924522 ~ 16929432 (-) True G1347067
TU1542973 other upstream 110463 19320870 ~ 19325054 (-) True LOC110491541
TU1543183 other upstream 250634 19461041 ~ 19461815 (-) True G1349896
TU1543843 other upstream 481285 19691692 ~ 19697658 (-) True LOC110491553
TU1545321 other upstream 1119993 20330400 ~ 20333729 (-) True LOC110491567
TU1545473 other upstream 1429819 20640226 ~ 20646198 (-) True LOC110491585

Expression Profile