RNA id: XM_021567323.2


Basic Information

Item Value
RNA id XM_021567323.2
length 4576
RNA type mRNA
GC content 0.54
exon number 16
gene id sema4gb
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 19244110 ~ 19279335 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgcgggcGAGCGAGCGACACCGGTGTACGTCTAGAATACACATGTGCAAAAATATGCTGGTTTTGACAGAGCAGAGGCTGGCATCTGCGCACCACTTCACCACGGAGGGACTCAAATAATTATTCTTCAGAAGATAATTCTCTAGTTTCGTAGAAGATTTTCAAGAGTGAGCCTTTCTACAGACTGAGAATGACCTAGAAGCCACCACTGCTGAGCCCAGCAGAGCAGGATATCATTCTTGTGTGTGTAAGCAACAAGGTGTGTGACAGCAAACAGGGCTCCAGCTGCACCCGGGTCAATCTGTCAAACATGGAGGGCCACGTCACACTGCTGCCCCCCCTGCTGCTGCTCCTCTGTAGCCTGTCAGGGGTGTGGGGGTTCCCCTTCGGCCCCGTCCTTGACATGGACGTCACCCCCAGGACCACAGTGTTCTCCCAAGGCCTGTTAGGTTGCCAGCGTTTCAGCAGCCCGTCTCAAAACTACAGCACACTACTACTGGAGGAGGACAATGGGGTGCTATACGTGGGGGCCAGGGGGGCTCTCTATGCCCTGGACACCACCAACATCTCCACTCCTGGCAACCTCACGATTGACTGGGAAGCTTCGGCCGAGCAGATGAAGCAGTGTCTCAACAAAGGAAAAGACAATCAGacagagtgttACAATCACATCCGCGTCCTACAGAGGTACAATGAGACTCACCTGTACGTCTGTGGCACGCACGCCTTCAGGCCCCTCTGTGCTTACATAGATGTGGAGCGCTTCAGTTTCTCCTCTGGCTTCGAGGAGGGCAGGGACAGGTGTCCCTACGACCCAGCCAAGGGCTACACCAGCCTTCTTGTGGACGGTGAGATGTTCTCAGCGACCCAGTATGAGTTCCGCAGCTCTCCGGACGTTCGTCGGAACTTCCCCTTCCCCACTCTGAGGACAGAGGAGGCCCCGACCAGGTGGCTGCTGGAGGCGGACTTTGTGGGCTCAGCGCTGCTGAAGGAGAGTGTCAACAGCTCGCTCGGCGACGACGACAAGATCTACTTCTTCTTCACGGAGAGGAGCCAGGAGcagatggcctaccccagccagaCCAGGGTGGCACGGGTTGCCCGCGTCTGCAAGGGTGACTGGGGTGGCCAGAGGACCTTGCAGAGGAAGTGGACATCCTTCCTGAAGGCTAGACTGGTGTGCTCCGTTCCTGACTACGAGCTCCACCTGAATGTGCTGCGTAGCGTCTTCGTACTGCAGGGCCCAGACGTACACAGCACCGTCTTCTACGGGATCTTTGGCCTGGAATGgaAAAATGTCAAGGTGTCTGCGGTGTGCCAGTACTCCTTCACAGATATTCAGAGGGCCTTCGAGGGGCCTTACATGGAGGTGCAGGATTCCAAATGGAGGGAATATAGAGGGAAGGTTCCGGTACCAAGACCTGGCTCGTGTATCACAAACATACACCGGTCCCAGGGCATCAACTCGTCCCGTGACCTCCCAGACAACGTGTTGACCTTTGCGAGGCGCCACCCCCTGATGTCTACACAGGTCCACCCCATAGGAGGGCGCCCCCTACTATTCAAGAGAAGTGTCAATTACGTCAAGATGGCCGTGCACCGtgtggcagctctggacagacacgTCTACACCGTGCTCTTCTTGGGAACTGACGAGGGCTGGCTGCACAGGGCTGTGGAGGTCGGAGGTCAAATGCACATCATAGAGGAGCTGCAGCTTTTTGAGAACCCTCAGCCTGTAGACAGCATGGTCATCTCCCAGACACAGGGAAGTATCTATGTGGGCTCCAACTCTGCAGTGCTGCAGGTCCCCTTGTCCTCCTGCCAGCGCTACACGTCCTGTTTCGACTGTGTGTTTGCCCGGGACCCCTACTGTGGCTGGGACGGGGCGCTGTGTGTGGAAATATCCTCACGCACAAACAGCTCCAATCTAACCCAGGATATACAGAAAGGCAACAGAGGCTGTGACAACAGCACAGGAGCTGtaGTCCACCGCAGGCGTACAGTGATGGCTGGGGACGACATCCTCCTCCAGTGCGAGCTGCGCTCCAACCTGGCCACGCCCCACTGGACCCTGGATGGTCACGAGCTCCAGGGCTATGACCTCGACTCGGGCCACCGCGTGGGCACCGATGGCCTGCTCCTCATAGGCGCCCGGGCCGACCAGAGTGGAGACTACCACTGCTACGCCGTGGAGAACGACGTGTGGGTGCCAGTGAGGCTGTACACGGTGAAGGTGCACCCTGACCTGCCCTTCCCTGTGGGGCCAACAGTCACAACGAACACTTTatcaaccaccaccactaccgccCCACCAAGCACTTTTCTTACCCCCAGCACCCCCACCGAGCAGCCCCTGCCCTCCCCACCTGCTCCCCTCCCCTTTGGACCAGAGTTCCAGAcctacaggcacatggaggccatgTATATCTCCCTGGTGGCTGTGCTGGGCGGGCTGTGCCTGGTGCTGACCATAGTGTTGCTCTACGTCAGCTTCTGCAAACGAGGGCCCTACCAGGGCCGCAAGTACTCCCAGGTGGGGCTGCCCGAGTCAGGGGCCGCAGCCGAGAGGAAGAAGAGCTCCCATTCTCATCTGGAGCTCAAGACCATGTCCATCCACTGCAACGGCAGGCAGGACAGCAAGCGCGGACGCCGCTCCCTGTCGGCTTCTAACGTGGACGACGTGGGCGACGGCTTCCTTCAGATTGTGCCTGGGGGAGGGTCTCCGGGAAAGTCGCCGCCCCCTCCCGCCCCGCCTCTCCCAATGCCGCCGCCCCTGCCTTCCTCGGCGTACGCATCGTCAGAGTACGCCAACGGGATGTCGGCCACGTTACCCAGTGTCCTTCGCAAGATGAACGGCAACAGTTACGTGCTGCTGAGGCAGACGGCGGACCCCGAGGGGAGCACGTCTCCCCTCTACCACTCGTTCACCGAAGAGCTCAACCGCATCCTAGAGAAGAGGAAGCACACGCAAATGGACCCCCAGCTGCCAGACGAGAGCTCtgtctagccccccccccccccctcactttcCCATTGATCTGTTTTATTGGTTTAACCCAACTACCCCAGAGTGCCCCCAAGAGGCAGGGAGGTCGAACTTTTGTATTATACTGCTGCTCTTTACCCAGTGTCAAAGCAACTTGTGGGAGTATCCATCCCTAAAACTCAATGTGCAGCTTCCTGTGACTCGAGACAAGTGGCCCACGTTCCCTCCTGAACACTGGAGTAAAGAAGACTCGCTGACTTTGACCAAACTGGAGCAGTCATTGATGTAGTCATGGTAACCATTTTGGACACACATTCTACTATTACATGGACCCTTTGATTGACTTTCAAGGACCTAAGGTCACATACATGACACATACACAAGTTAGTTACAATCCTACCTCAGATCCTTACCCTATTGGGGAAGTAGGGTCAGTGATGGTCTGGTCAGCAGGCACACTGACAGCGAGTGCTGTGGTGTATCGTCGGACACGGGACGATGAGAGCCCAGGTCATATGACCAACGACCATGGAGTGAGATGGTGATGCACGTAAGACTGTGAGGAACTACCAAATCCGGTATGAACATTATAGACCATCGTCTAAACTATTGAGTTCGGAGAACAATGGGTACGGTAGTTCAGTGCCATACACGTCTAAGATGGCTCTTATTGACCCAGGCCTACAGAACTTCATATGAGAGCAAATATGGTTGGACAAATAATACATTGCAGTCATAACTTAATACCACACACTTATCTTCATTTTCTTTTGTGCTTTATGTAAATAGCAATAGTATCGCTGTGGCAGCCATCAGTAGCAACAATGCCAGTTGAAATGGTTGCGCCGAAACCAAATTGAAATGGAACTTTTTAGCATCTTTGTGTTGTTAGCGTCGGATTGTGTCAAAGGGGGAAAACAGCAGAATGGATAGACGGCAGGTTTTATCTCAACTTGGCGGGGATGAAGACTATCATTAAAGAATGAAGACAATCGTTAAGGACTGATCTCTGGTCAGATTGATCAGAGAAACTgagtgatgataatgatgatgatgatgatggatcTGATTGCCAGAGATGTGTGAGCCCAACAGGAGACCAGAAGGCAAAGATATGCAAGAAGCCAGATCACATTGATCTCAGAAGAGATGGAGAAGATGGATAGAAGGAGTGTGTGAGGAACCCTGATGATCTGAGCCAATGACTGCTCAAAATACACAGAAGGACAATCAGCACGTGAAATCTCCAATGGCAGGGGACTTGGATATGGTTATTGTAGTGTACTTACTACTTACTGTCAATTGGAAAATAGGCTGGCTACTACAGTCAAATACGCACCTCCAGTATATACTGTATGCCCCCATAAACATTGTGGAACACTTATTTCAACAAACATACTCGCTCACGTCATACTGTACAGACATGACAACATTCAAATGGAGGTTTAGACAAAGGCCCagtgcagccgtttttatctcaatatcaaatcatttctaggtaacaatgaagtaccttactgtgacaaaaatagcttcttagcaaagggcaatttctcaagcaagaatgttgctgtgactgtctgggagt

Function

GO: NA

KEGG:

id description
K06521 SEMA4, CD100; semaphorin 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1542921 lncRNA downstream 1567 19241123 ~ 19242543 (-) True G1349645
TU1542923 lncRNA downstream 3176 19240389 ~ 19240934 (-) True G1349647
TU1542978 lncRNA downstream 21816 19222070 ~ 19222294 (-) True G1349700
TU1542915 lncRNA downstream 49808 19151679 ~ 19194302 (-) True G1349640
TU1542889 lncRNA downstream 95095 19111473 ~ 19149015 (-) True G1349624
TU1543007 lncRNA upstream 3803 19283138 ~ 19284148 (-) True G1349728
TU1543013 lncRNA upstream 18391 19297726 ~ 19297932 (-) True G1349732
TU1543042 lncRNA upstream 69276 19348611 ~ 19348908 (-) True G1349758
TU1543104 lncRNA upstream 122029 19401364 ~ 19401620 (-) True G1349820
TU1543158 lncRNA upstream 161606 19440941 ~ 19441203 (-) True G1349871
XM_021565062.2 mRNA downstream 4869 19232951 ~ 19239241 (-) True twnk
XM_021565061.2 mRNA downstream 33703 19164692 ~ 19210407 (-) True LOC110491536
XM_021565059.2 mRNA downstream 33706 19164692 ~ 19210404 (-) False LOC110491536
XM_021565060.2 mRNA downstream 61952 19164692 ~ 19182158 (-) False LOC110491536
XM_036946413.1 mRNA downstream 118075 19107039 ~ 19126035 (-) True LOC110491529
XM_021565071.2 mRNA upstream 31635 19310970 ~ 19325094 (-) False LOC110491541
XM_021565076.2 mRNA upstream 60991 19340326 ~ 19342139 (-) True LOC110491543
XR_002468846.2 mRNA upstream 132183 19411518 ~ 19432319 (-) True LOC110491545
XM_021565079.2 mRNA upstream 157860 19437195 ~ 19439759 (-) True LOC110491546
XM_036946428.1 mRNA upstream 275757 19555092 ~ 19581659 (-) False LOC110491548
TU1542585 other downstream 609705 18634031 ~ 18634405 (-) True G1349366
TU1541907 other downstream 820924 18417615 ~ 18423186 (-) True prr15lb
TU1540612 other downstream 1852156 17389385 ~ 17391954 (-) True LOC110491477
TU1540318 other downstream 2047981 17195330 ~ 17196129 (-) True G1347343
TU1540000 other downstream 2314678 16924522 ~ 16929432 (-) True G1347067
TU1542973 other upstream 41535 19320870 ~ 19325054 (-) True LOC110491541
TU1543183 other upstream 181706 19461041 ~ 19461815 (-) True G1349896
TU1543843 other upstream 412357 19691692 ~ 19697658 (-) True LOC110491553
TU1545321 other upstream 1051065 20330400 ~ 20333729 (-) True LOC110491567
TU1545473 other upstream 1360891 20640226 ~ 20646198 (-) True LOC110491585

Expression Profile