RNA id: XM_021565071.2


Basic Information

Item Value
RNA id XM_021565071.2
length 5404
RNA type mRNA
GC content 0.51
exon number 12
gene id LOC110491541
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 19310970 ~ 19325094 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATGCGATTCCGATCTCCTACTTTCTCGAACATCTCTGCCTGAAGCTGAGCTAAAGGTTGCAGACGCATTCGATTAGACTTTTCTTCCTGTCTCGGATTCAGGAATGTACATGTGAAAGAAACGACTCTGTGAAATGGCATCATGCGATACAATGTTGCAGTCCACGTAGGAGTCAAACAAGAACGACAAAGCAGCGGGGAAAAATCCAGTTAATATCGCTTGTTTTGGACATCGCTAACTGGCTAGTTAACGACGTTGACCCAACAATAATACGCGTGTCATGTGGGAGTAACTCTCATCCCTGGAGGCAAGATGTTAGCCACACAGACCCCAGATACAGGGCCAGAGGCAAAAGACGTCAAGCAGTGGATTAAGGAGAAGTTGGCGTGGTCACTCAAGGCGTTGCAGAAGCGCTACGTGACAACCGATGTCGTGGTTACCAGCGAGGATGGTGACGCCAATCTGCTGTGCTGCGCACTGGAGGCCATCTTTATCCACGGCATCAAAAGCAAATATGTTCGCTCCGAGGCTGGGGGACGCGGCAGGAAAGGGGGGTCCCGGGGAGCCCTCCCCCAGCCTGTGTTCTGGAGCCTCCTCAAGACTGTCACTCACGGTGACGTGATCACGGAGCTGGAGAAGCTGAGCTTCGTGGGTACGGACACGGGTCGCTGCCGGGCCTGGCTGCGGCTGGCCCTCAACCACGGCCTAATGGAGTGCTACCTGGCCTCCCTGTTCCGCGAGGGCTCCAAACTGCAGGCCCACTACCAGCCCTCCGCCCTGCTTCTGGACCCTGAGGAGCGTGAGGTGCTGCTCAGTTACATCCAGGGCCTGGCCTCCCTCACCTTCAACCTCTCTTACAAATCGGCCGTGCTCAACGAGTGGACCACCACCCCTCTGGCTCTGGCTGGCCTCTGCCCTGCCGCCCAGGCTGAAGCGCTCGACCTCCCCTTTCTCACCAAGCGCAAGGAATCCTATGATACGGTGTCACAGTCGTCCGGCGGGTCGGATACGGTTGAAGTGCAGCGAGGGGGGCCAGGGGTGCTGGGGAAGGGGATTGGGGGGGTCTCAGGGTTTAAGACCCCACTGAATTCGTCCAATTTGAGCCTGGACACCACAGGGTCGTCTCAGCTCTCCTCCAGTCTGAGCTCTGACAGTCTGCTTCAAGGTCACGACCCCAAGAGCCCAGACAAGGAGCCCTGGCCATGTGACCTGGAAATCTCCAACATGGAGAACAATGGCAATGCCAAGAGGCCTCTCAAAGATGTTCTGGCAGACTTCAGGGAGAGTGCCCATTCCAGTCAGGACTCCATGCGCGAGGATTCATACGTGTCCACCCCAGGCGCAGACCACCTCTCTGAGAACACTGCCTTCAGTGGCTCCGACAGCGAGACCCAGGGACATGTCACACATCTCACTGGCCCCTCTAACCCTGCTTCACTGGGGTCAGACCAGGAGGAGCCGTCCACCAAAACCCACGCCCCCTCCAACGTGTACTCGCACATTGAAGGGCCCTCCAGTCCCAGTGACTGTGTGGAGAGCACATCGACAACTCCTCACCTGCCTGTCACTGAGACGCCACAGGAGAAAAAAACAGAATATTCTGTTAAGAGCGCCTCGGAGCCTTCAGCCTACATGAACCTACACCGCACTACCAGCGTGCTCAGTCGGACGGTGTCTACAGACTCAGTCACACATTCCCACTCCTGGATCTCTGAGGATGACATCTATAAGCCACACCTTGAGAAACTGGCTGACCCCGATGAGTCTTTGCTAGGGTCTGGCCCAGCTTGTGTGAACGGATTTACCTCTCCCCCTCTAGAGCCCGAGACCCCCCAGTCCCCCCCCAGCGTGGTCCACCGCAGGCAGATAGGCCTCTCCAACCCTTTCCGCGGACTACTGAAGCTGGGACACCTGGAGCGGCGGGGCACGGTAGGCATGTGGCGCGACTACTACTGCGAGCTCTCGCCCTTCGAGTTCCGCCTCTACCTGAATGCAGAGGAGCGCACCTGCTGCGACAATTGCTCCCTGCTGCGTTGCGAGGATGCCTGCGTCACCTCGGCCGAGGGCCGCTTCGACCTTGCCTTCCCCGGGAAAAGGCTCCTTATGCGGGCGGCCAACTGCGATGAGGCCGAGGACTGGGTGGACCGCATCACTGAAGCCGTCAACAAGTGCCGCCCGCTTCACCTCCTCGATGACCAGTGGGAGGTGCTGCAGCTCTCTGACAGCAGTGTAACCCCGGATGAGCCCCCAAAATCTTCCCCTTCATCCCCCTCCTCCGTTCCCGCCAGTCCCGATCGAGGGGGGGCTGTGGTTGAGCAGGAGCAGCagctggagctggactggacgcgtCCCACAGACCCAGAGTCAGACGCCATTAAGGAAGCAGTGCTGTACTTCTGCCAGGACTCCGAGGCTCGCAACTGGACTCCTCtcgtcttctccctctccttagaGACTCTCAAGGGCTTCCGGATGCAAGACGGGAAGAAGGTGCTGCGCTGCTCCCACCCCATCGAGGGGATCCGGGACGTGGTCCCAGACGTTTCTATGGGCGGACCAGCCTTCTTTAGGGTCGTAACGGCCAGGGATACGCTCAAGCTGAGGGCCAAGAGCTCTGAGGAGGCACGTGCCTGGAGGGGCCTCATCAGGGGAGCCCTGGACTCCTACCTGGAGAGTGGAGAAGACTGGGAGCCTGAGAGCCCCGGGGTGGCCCCTGGGGCGGGAGGGAACACCCACAGACTGGTGCAGCATAGACTGAAGGGGGACGGGGTGCTGCTGGCCCATCTATGCACAGTGCCCACAGAGAAGGGGCTGGACCTTCAGGGCTTCAAGTGTGCAGGTTGTCCAAAGGTGATAGGCGTCTCCCGAGGGAAAACCAGACTGTGTGAGTTTTCAGGGCAGTACTACTGTGACGCTTGTCACCAGGGCGACACCATCGTCATACCCTCCCGCATGGTGCACAACTGGGACCTCGCACCTCGGGAGGTCTCCAGGCATGCCCTTAAGCTGCTGGCTCAGATTGAACATGAGCCCCTGCTCAACCTTGACCTTTTGAACCCTGACCTGTGGGAGCATGCTGAGGCCATGGCCCAGGCACAGAGCCTCAGACAGAGGCTGCGTCTCCTAGGAGACTACCTGCTCACCTGCCGCAGCGGAGCATGCAAGAACATCcagaccagACTGGGTCCAAGGACATACTTATTAGAATCAAGCCATCTCTACAGTGTCATGGACTTACGACAGatagCGGAGGGAATGTATGTGGCCTACCTGAACACTTTGATCCAGTTTGCCTCCAACCACGTCCACCACTGTGACCTTTGCACCCAGAGGGGCTTCATCTGCCAGATCTGTCACACCAGTGACATCATCTTCCCCTTCCAGTTTgacaccaccaccagGTGTAAAGAGTGTAAGGCCGTGTCTCACGTAACCTGCAAGGCCAAGTCGCCTTCCTGTCCACGATGCCTGCGTCTTCAGAGGTACCTCGAGAGAGATCTGCAGGACTAACCGGCAACCCTGCAGGAATGGTCTTTGTGACCCAGTGGGCTTCCCATAGCTGCAGAGACCTATGAAATGACAATAACAGACATTGACATCCTGCTTCTAGTTTCTTTTTTTCTACATTAATTAACCTCAAGTGCAATTAGGAAGTGCGACTGTATGGACCGACCACAGACCAAACATGATCAACTGAACTGGATAGTGGTCGAGCCAGGAGCTATTTGTCAACTTGCACTAACATGGAGAGGTTTCTGCTATTGACATGATTGACAAGGTGAAGCAAGCTGATATGTTCTTACCTCTGAACTAGCTCTACGTCATGAGTGTCCAAGCCAAGGAATCATCTGAACAATATAATCCAGTAAAGGATGATGCCAAGAATCTCCTTGATGCAATTTCTATGACATTTATACATTGATGTTGTCATTGTTTGGGGGGCTTGTGGTGTTTTGTTACCTAGTTATTTCATGTTTACAGGAAACGGCTCGGTGTAAATTTGTACAGGACTTTCTGGGAAGCTCAAAGGAGCAAGTCACtcatataaaaataaatattaaactGCTTCCAGTTCCACAAGACGGGATACATGTATACGCCTGAAGGAAAAAAACTGCACTTGAAAACGTTCTCAAACTTAGACTGTGCCTTCGTTTGGATTTTTTACTTTTACACTCAAAAACATAATGTTCCATTGATTGTAGAATTGTGCATCATGCAACATCACTGAAGTTAAGAAACGGACGATTTTAGGTACTGTAGGGTCAAAGCATATACTGTCATTATTGAATGTTAATTGCCAAATGTCAACAGTTGTGAGTCTTGATCTTGATACAAATCCATCTTGATACAAATCCATTAATTCAGAATGGGAATTTCTTAATGAATTTCTTGATGTTTTCACCATCTGATAAGTTCTGACCACATAAAGAAACATTATTCTGCCCAAGTTATAATAGCTAGTCATTAATTAGATACATTGGGTTATGATTTATGCTCCACTTTACCCTGAAACCTTTTGCTGCAAAATATCAGTAGTTCCAGGCTAACATTGAAAAGAAGCTTTATAGTCTTGAGAAATTTGTTCCCTGCCCATTGTGGTATCCTACCAGTATGATAAAGCCATATGAAATAACAGAATATTGATTAGCATAACAACAAATGCTAATGTTGCAGCAAAACCAAAAAGCAGCTTTGTAGAGTGAGTGTTGGTTCGTCAATGTTCTTGCTTCGTACCTGAACTTCTCAATGTTTCAGGATATTCTAAATCATTTTGCATACTTGCACCTTAACACGTTGGTATGACTGTTTATCCTGTAGTTATTTTTATTCAATAGTTTCAGCCAGTTGTCCTCCCAGAGAAATCATGATTCTTTCAAAGGGTATATGGCCTTTTTAATTATTTAATGTATAATTGTGTGGGAATGCTTTTACCATTCAACCATTGTGAGAAGTTGTCATTATTTGAAATGTTAACTGAAGGAAATGGATGGCTTTCCTGATATCTGACGCCGAGATCATGTAAGACGATGTGTAAAGCAGAATTACGTACTGAAAGCAGAGTCCTGGAATTATGTTACACTATGCCACTGGGCTCCAATGGTTACTCACGAGGTGCCAGAAAATCATTACATCTCTTACCCATGTTTTTATGAGGTATATCAAGGTTTTATTTGTAGTTAGACTGACTTGTACACATTCACAGCTAAAAGCTGAATTGCAGTATACAGGCAAAAGAAGAAAGAAGATAAAAGTTGAAGCAAAAGATATGGCATGAAGTCTCTAGTCTTGACAGCTTCCGATGGGGACTGCTCTTGGTGTGAAGGTCTCTATTTGTGTGGTCATCTTATAAATGCtcattattatattatgatgAACATAATAAAGACTATCTAGTTATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1543013 lncRNA downstream 13038 19297726 ~ 19297932 (-) True G1349732
TU1543007 lncRNA downstream 26822 19283138 ~ 19284148 (-) True G1349728
TU1542999 lncRNA downstream 43870 19266677 ~ 19267100 (-) True G1349721
TU1542998 lncRNA downstream 44534 19266189 ~ 19266436 (-) True G1349720
TU1542996 lncRNA downstream 47375 19263359 ~ 19263595 (-) True G1349718
TU1543042 lncRNA upstream 23517 19348611 ~ 19348908 (-) True G1349758
TU1543104 lncRNA upstream 76270 19401364 ~ 19401620 (-) True G1349820
TU1543158 lncRNA upstream 115847 19440941 ~ 19441203 (-) True G1349871
TU1543166 lncRNA upstream 123193 19448287 ~ 19448554 (-) True G1349879
TU1543171 lncRNA upstream 126146 19451240 ~ 19451546 (-) True G1349884
XM_021567323.2 mRNA downstream 31635 19244110 ~ 19279335 (-) True sema4gb
XM_021565062.2 mRNA downstream 71729 19232951 ~ 19239241 (-) True twnk
XM_021565061.2 mRNA downstream 100563 19164692 ~ 19210407 (-) True LOC110491536
XM_021565059.2 mRNA downstream 100566 19164692 ~ 19210404 (-) False LOC110491536
XM_021565060.2 mRNA downstream 128812 19164692 ~ 19182158 (-) False LOC110491536
XM_021565076.2 mRNA upstream 15232 19340326 ~ 19342139 (-) True LOC110491543
XR_002468846.2 mRNA upstream 86424 19411518 ~ 19432319 (-) True LOC110491545
XM_021565079.2 mRNA upstream 112101 19437195 ~ 19439759 (-) True LOC110491546
XM_036946428.1 mRNA upstream 229998 19555092 ~ 19581659 (-) False LOC110491548
XM_021565081.2 mRNA upstream 229998 19555092 ~ 19590896 (-) True LOC110491548
TU1542585 other downstream 676565 18634031 ~ 18634405 (-) True G1349366
TU1541907 other downstream 887784 18417615 ~ 18423186 (-) True prr15lb
TU1540612 other downstream 1919016 17389385 ~ 17391954 (-) True LOC110491477
TU1540318 other downstream 2114841 17195330 ~ 17196129 (-) True G1347343
TU1540000 other downstream 2381538 16924522 ~ 16929432 (-) True G1347067
TU1543183 other upstream 135947 19461041 ~ 19461815 (-) True G1349896
TU1543843 other upstream 366598 19691692 ~ 19697658 (-) True LOC110491553
TU1545321 other upstream 1005306 20330400 ~ 20333729 (-) True LOC110491567
TU1545473 other upstream 1315132 20640226 ~ 20646198 (-) True LOC110491585
TU1545462 other upstream 1495605 20820699 ~ 20823122 (-) False h3f3d

Expression Profile