RNA id: TU1542973



Basic Information


Item Value
RNA id TU1542973
length 983
RNA type TUCP
GC content 0.57
exon number 4
gene id LOC110491541
representative True

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 19310970 ~ 19325094 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGAAGCTGAGCTAAAGGTTGCAGACGCATTCGATTAGACTTTTCTTCCTGTCTCGGATTCAGGAATGTACATGTGAAAGAAACGACTCTGTGAAATGGCATCATGCGATACAATGTTGCAGTCCACGTAGGAGTCAAACAAGAACGACAAAGCAGCGGGGAAAAATCCAGTTAATATCGCTTGTTTTGGACATCGCTAACTGGCTAGTTAACGACGTTGACCCAACAATAATACGCGTGTCATGTGGGAGTAACTCTCATCCCTGGAGGCAAGATGTTAGCCACACAGACCCCAGATACAGGGCCAGAGGCAAAAGACGTCAAGCAGTGGATTAAGGAGAAGTTGGCGTGGTCACTCAAGGCGTTGCAGAAGCGCTACGTGACAACCGATGTCGTGGTTACCAGCGAGGATGGTGACGCCAATCTGCTGTGCTGCGCACTGGAGGCCATCTTTATCCACGGCATCAAAAGCAAATATGTTCGCTCCGAGGCTGGGGGACGCGGCAGGAAAGGGGGGTCCCGGGGAGCCCTCCCCCAGCCTGTGTTCTGGAGCCTCCTCAAGACTGTCACTCACGGTGACGTGATCACGGAGCTGGAGAAGCTGAGCTTCGTGGGTACGGACACGGGTCGCTGCCGGGCCTGGCTGCGGCTGGCCCTCAACCACGGCCTAATGGAGTGCTACCTGGCCTCCCTGTTCCGCGAGGGCTCCAAACTGCAGGCCCACTACCAGCCCTCCGCCCTGCTTCTGGACCCTGAGGAGCGTGAGGTGCTGCTCAGTTACATCCAGGGCCTGGCCTCCCTCACCTTCAACCTCTCTTACAAATCGGCCGTGCTCAACGAGTGGACCACCACCCCTCTGGCTCTGGCTGGCCTCTGCCCTGCCGCCCAGGCTGAAGCGCTCGACCTCCCCTTTCTCACCAAGCGCAAGGAATCCTATGATACGGTGTCACAGTCGTCCGGCGGGTCGGATACGGTTGAAGTGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1543013 lncRNA downstream 22938 19297726 ~ 19297932 (-) True G1349732
TU1543007 lncRNA downstream 36722 19283138 ~ 19284148 (-) True G1349728
TU1542999 lncRNA downstream 53770 19266677 ~ 19267100 (-) True G1349721
TU1542998 lncRNA downstream 54434 19266189 ~ 19266436 (-) True G1349720
TU1542996 lncRNA downstream 57275 19263359 ~ 19263595 (-) True G1349718
TU1543042 lncRNA upstream 23557 19348611 ~ 19348908 (-) True G1349758
TU1543104 lncRNA upstream 76310 19401364 ~ 19401620 (-) True G1349820
TU1543158 lncRNA upstream 115887 19440941 ~ 19441203 (-) True G1349871
TU1543166 lncRNA upstream 123233 19448287 ~ 19448554 (-) True G1349879
TU1543171 lncRNA upstream 126186 19451240 ~ 19451546 (-) True G1349884
XM_021567323.2 mRNA downstream 41535 19244110 ~ 19279335 (-) True sema4gb
XM_021565062.2 mRNA downstream 81629 19232951 ~ 19239241 (-) True twnk
XM_021565061.2 mRNA downstream 110463 19164692 ~ 19210407 (-) True LOC110491536
XM_021565059.2 mRNA downstream 110466 19164692 ~ 19210404 (-) False LOC110491536
XM_021565060.2 mRNA downstream 138712 19164692 ~ 19182158 (-) False LOC110491536
XM_021565076.2 mRNA upstream 15272 19340326 ~ 19342139 (-) True LOC110491543
XR_002468846.2 mRNA upstream 86464 19411518 ~ 19432319 (-) True LOC110491545
XM_021565079.2 mRNA upstream 112141 19437195 ~ 19439759 (-) True LOC110491546
XM_036946428.1 mRNA upstream 230038 19555092 ~ 19581659 (-) False LOC110491548
XM_021565081.2 mRNA upstream 230038 19555092 ~ 19590896 (-) True LOC110491548
TU1542585 other downstream 686465 18634031 ~ 18634405 (-) True G1349366
TU1541907 other downstream 897684 18417615 ~ 18423186 (-) True prr15lb
TU1540612 other downstream 1928916 17389385 ~ 17391954 (-) True LOC110491477
TU1540318 other downstream 2124741 17195330 ~ 17196129 (-) True G1347343
TU1539999 other downstream 2391438 16924522 ~ 16929432 (-) False G1347067
TU1543183 other upstream 135987 19461041 ~ 19461815 (-) True G1349896
TU1543843 other upstream 366638 19691692 ~ 19697658 (-) True LOC110491553
TU1545321 other upstream 1005346 20330400 ~ 20333729 (-) True LOC110491567
TU1545473 other upstream 1315172 20640226 ~ 20646198 (-) True LOC110491585
TU1545462 other upstream 1495645 20820699 ~ 20823122 (-) False h3f3d

Expression Profile