RNA id: XR_002468846.2



Basic Information


Item Value
RNA id XR_002468846.2
length 877
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC110491545
representative True

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 19411518 ~ 19432319 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CAGGGCACACGGATAAAGGGAAAGTGGGGTGTGTATAAAGAAAGAATGCAGGGCGAGGAAATTTCAATGAAACACAATAGTTCTCTTCCTCTTGTTGCAGGAGGGGGAACATAAGGCTATTTGTTTTTTCACCCTTTTTCTACTGTATGGCATCGGGAGACCCCTGTGAAAGAGCAGTTGAGACAACAGACGGAGATGAACACACTCCAGCTGGAGAACGATGAATGGCCCAGGGGACTTGGACTGAGGGAACACGTGCAGACCCAATCAACAGACAATACCGCGCGGCTTGAGGTTGCCAGGGCACAGTAGGGGTTCCATAAGCGTTGGTTTAAGCGTCTGTGGTGATGGGGTCTTTGAAGATGGAGGAAGACATCTGTCTGGATGACAAGGACAGGACAAGTCAACCTGTCTCACCTCAAGGACTGCTGGCTATGGCAATGGATGATAGCAGcagaaaaaaaaaattatgttccTCAAATACATGAAGTTCTATCAAGCCATCCAGAACTATAGTATGTGAAATTATGCTAAATCAAGTTACGTTGGAAATTCCCACTTCCTGTGTTTAAGACCGATGTATGCAGTGGCCTAGCAAGACAACTCTTTAAGATCTTCTACATGTTTTAATCTTTCTTACTGTAGCTATATGCAGTATTACTTTCTGTGTGTTTAGAGTCAATGTGATATGAAGACTAACTGCCTACCCCAGGGTCAAATCCCTCTCTTTATTAACTGGGTGGTACGAACCCTgagtgctgattggctgaaagctgtggtatatcagaccgtataccatgggtatgacaaaaaatgtatgtttactgttctaattacatttgtaacaagtttctaGCAATACgacacctcaggggtt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1543104 lncRNA downstream 9898 19401364 ~ 19401620 (-) True G1349820
TU1543042 lncRNA downstream 62610 19348611 ~ 19348908 (-) True G1349758
TU1543013 lncRNA downstream 113586 19297726 ~ 19297932 (-) True G1349732
TU1543007 lncRNA downstream 127370 19283138 ~ 19284148 (-) True G1349728
TU1542999 lncRNA downstream 144418 19266677 ~ 19267100 (-) True G1349721
TU1543158 lncRNA upstream 8622 19440941 ~ 19441203 (-) True G1349871
TU1543166 lncRNA upstream 15968 19448287 ~ 19448554 (-) True G1349879
TU1543171 lncRNA upstream 18921 19451240 ~ 19451546 (-) True G1349884
TU1543182 lncRNA upstream 26599 19458918 ~ 19459259 (-) True G1349895
TU1543186 lncRNA upstream 31199 19463518 ~ 19463744 (-) True G1349899
XM_021565076.2 mRNA downstream 69379 19340326 ~ 19342139 (-) True LOC110491543
XM_021565071.2 mRNA downstream 86424 19310970 ~ 19325094 (-) False LOC110491541
XM_021567323.2 mRNA downstream 132183 19244110 ~ 19279335 (-) True sema4gb
XM_021565062.2 mRNA downstream 172277 19232951 ~ 19239241 (-) True twnk
XM_021565061.2 mRNA downstream 201111 19164692 ~ 19210407 (-) True LOC110491536
XM_021565079.2 mRNA upstream 4876 19437195 ~ 19439759 (-) True LOC110491546
XM_036946428.1 mRNA upstream 122773 19555092 ~ 19581659 (-) False LOC110491548
XM_021565081.2 mRNA upstream 122773 19555092 ~ 19590896 (-) True LOC110491548
XM_021565087.2 mRNA upstream 204017 19636336 ~ 19653981 (-) False mpp2b
XM_036946431.1 mRNA upstream 204017 19636336 ~ 19676499 (-) False mpp2b
TU1542973 other downstream 86464 19320870 ~ 19325054 (-) True LOC110491541
TU1542585 other downstream 777113 18634031 ~ 18634405 (-) True G1349366
TU1541907 other downstream 988332 18417615 ~ 18423186 (-) True prr15lb
TU1540612 other downstream 2019564 17389385 ~ 17391954 (-) True LOC110491477
TU1540318 other downstream 2215389 17195330 ~ 17196129 (-) True G1347343
TU1543183 other upstream 28722 19461041 ~ 19461815 (-) True G1349896
TU1543843 other upstream 259373 19691692 ~ 19697658 (-) True LOC110491553
TU1545321 other upstream 898081 20330400 ~ 20333729 (-) True LOC110491567
TU1545473 other upstream 1207907 20640226 ~ 20646198 (-) True LOC110491585
TU1545462 other upstream 1388380 20820699 ~ 20823122 (-) False h3f3d

Expression Profile