RNA id: XM_036946428.1


Basic Information

Item Value
RNA id XM_036946428.1
length 4276
RNA type mRNA
GC content 0.49
exon number 23
gene id LOC110491548
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 19555092 ~ 19590896 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGAAGCCTGGGGGAAGAAGGCCAAAGAGAACTTCTCTCCTACTGTGTTGGCCACCTTCAACACTACTCTGCAGAGGCGTCTCAAGAAGATCAACATCCTGGGAGCGGCTAACCTACCTGCAGGAGAAAGAAATGAGAGCTGACAGAGACCATGGCCAACTCACGGAGCTACAAGACACTGCTGTATGCTTGGGAGGGTTGGCACAATGCATCGGGTGTGCCACTCAGGGCAGAGTATACAAAGTTTGTGGAGCTTAGCAACAAGGCCTATAAAGCTGACGGTTTTGATGACACGGGAGCATACTGGCGTTCGTGGTACAAGTCAAAGACTTTTGCGAATGACCTGGAGGCTATTTACAAACAGGTGCAGCCGCTCTACCAGAATCTTCACGCCTTTGTGCGCCGCAAGCTCTACGACCATTACGGACCGAAATACATCAATCTTAAAGGACCTATCCCTGCTCACCTGCTGGGAAACATGTGGTCGCAAACCTGGAACAACATCTATGGCATGATGATCCCCTTCCCCGGCAAACCCAATGTGGACGTGACCGATGAAATGGTGGCCAAAAACTGGAATGTTACTCACATGTTCCGGGTGGCTGAggagttcttcacctccctcggcCTCATCAAAATGCCCCAAGAGTTCTGGGACAAGTCTATGTTTGAGAAACCAGAAGGTCGCGAGGTGGTGTGTCATGCATCTGCCTGGGACTTCTACAATAGAAAGGACTTCAGGATCAAACAGTGCACCACAGTCAACATGCAGCAGCTTTTCACAGTGCACCACGAGATGGGCCATGTTGAATATTACCTGCAGTACAAAGAACAACCTATAAACTTCCGCCGCGGTGCTAACCCGGGCTTCCACGAGGCCATTGGTGATGTCATGTCCCTCTCTGTGTCCACACCTAAGCATCTGGCCAGCATCGGCCTATTGTCTAACGCGACCAATGACAACGAGAGTGACATCAACTACCTGCTGAAGATGGCTCTGGACAAGATGGCCTTCCTTCCCTTTGGCTATCTCATTGACCAGTGGAGATGGAGTGTGTTTAGTGGGCGCACCCCCCCAGAGCGATACAACGCAGACTGGTGGCACCTCAGGACAAAATACCAGGGTATATGTCCGCCCACCAAACGCACAGAGGAGCACATGGACGCTGGAGCCAAATATCACATTCCAGGAAACACCCCATACATCAGGTACTTTGTGAGCTTCATTCTGCAGTTCCAGTTCCACAAGAAGCTGTGTCAGGCAGCCCATCAGACAGGACTCCTGCACACATGTGACATCTACCAGTCCAAGGAGGCTGGAAAAATTTTAGAGACAGTCCTTAAATCCGGAGAATCCAAGCCCTGGGAACAGGTGCTCCAGGAAGCAGTCGGGACAAACAAGATTGACGCCAGCTCCCTGATGGAATACTTTGGTCCCATCATCACATGGTTGAAGGAACAGAATGCAGCAATGAATGAGACCTTGGGCTGGCCTGACTTTAACTGGGTTCCACCCGTACCAGAGGGCTACCCCGAGGATATTGACATGATTGCAGATGAGGTGCAGGCGAAGAATTTCCTGGAGGAGTACAACAGCACTGCGGAAGTGGTCTGGAATGCCTACACTGAGGCATCATGGGCCTTCAACACCGATATCAATGAGAAGAACAGGCAGAACATGCTGCAGAAGAATTTGGACATGTCTAACCACACACTGACCTACGGAAAGGAGGCCCGCAAGTATGACACCACAGACTTCCAGGATGGGGCCTTGAAGCGTATCTTGAATAAACTCAGTGACATTGAAAGGGCCGGACTTCCCGACGAGGAACTGAAAGAGTACAACAATTTGCTGGCCAACATGGACACCAAGTACAGTGTGGCTGAGGTGTGCAGAGCCAATGGGACCTGCCATCCACTGGACCCAGACCTCCAGAAGATCATGGCTGAGTCCAGAGACTACGATGAGCTGTTGTTCGCCTGGCAGGGCTGGAGAAATGCCTCTGGCAGAGAACTGCGACAGGACTACAAGAGATATGTGCAACTGGCCAACAAAGCTGCTGCGCTTAACGGACATTCTGACAATGGGGCGTTCTGGCGCTCCATGTACGAGACCCACTCCTTTGAAGAGGATCTGGAGCATCTGTGGAAGGAGCTGGAGCCCCTCTATCTCAATGTGCACGCCTACGTGCGCAGGTCTCTTTACAGGAAGTATGGAGGCAAACACATCAACCTGAAGGGACCCATCCCTGCACATCTTCTAGGCAACATGTGGGCGCAGACCTGGTCTGGCATCATGGACTTGGCCATTCCGTACCCCGATGCCACTCAAGTAGACGCGACACCAGCCATGATAGCCAAGGGCTGGAATGCCACCAGGATGTTCCAAGAGTCAGACAACTTCTTCACTTCTCTGGGGCTATTGCCCATGCCTCCAGAGTTCTGGGTCAAGTCCATGCTAGAGAAACCCAATGATGGACGCAACGTGGTGTGCCATGCCTCCGCCTGGGACTTCTACAACCGCAAAGACGTCAGGATCAAACAGTGCACCGTGATAACCATGGATGACCTCATCACAGTGCACCATGAGATGGGTCATGTGCAGTACTTCCTGCAGTACAAGGACCAACCTATTTCCTTCCGCGACGGCGCCAACCCAGGCTTCCACGAGGCCATTGGTGATGTGCTGGCCCTGTCCGTCGCCACTCCCAAGCATCTAAAGGAGATTGGTTTACTGGATGTGGTGGAGGACAACCCAGAGAGTACGATCAATTACCTCATGAGCATCGCCCTGGACAAAATTGCCTTCCTGCCCTTCGGCTACTTGATGGACCagtggaggtggaaagtgtttgatGGACGCATCTCTCAGGGGGAGTACAACAAGGAATGGTGGAACATGAGAGTGAAGTACCAGGGCGTGTGTCCACCTGTGGCCCGTACTGAGCAGGACTTTGACCCAGGTGCAAAGTTCCACATCCCTGCTAATGTGCCCTATGTCAGGTACTTCGTGAGCTTCATCATCCAGTTCCAGTTTCATCAGGCTCTGTGTAACACCGCCGGGCATGTAGGCCCTCTCCACCAATGTGATATCTACCGCTCCAAAGAGGCAGGGAAACTTCTAGGTGACGTGATGAAGCTGGGTTTTAGTAAGCCCTGGCCTGAAGCGATGGCTATGATCACTGGAGAGCCTACCATGTCCGCCAAGCCACTGGTACAGTACTTCAAACCTCTCACTGATTGGCTGGAGGTAGAGAACAACAAGAATGGCGAGGTCAGAGGCTGGCCAGAATATGACTGGAAACCACCAAGTGACGGCTCAGAAACATCTCCCCCAGCCCCAATCCCAGTTCTAGATAATGGTAAAGTTAACTTTCTGGGCATGAGTCTGGATGGTGCAGCGGCTGCAGCAGGCCAGTGGGTCCTACTGGTCCTGGGCCTGGTGTTCCTAGTGGCCACCATCCTCCTGGGCTACAAGTACAAGAAATCAAAACGAAGAAATCTGTCCTCATCTGAGCTGGAGCTGAAGTAAGGCTGCACGTACTGCACTATTGGGAAAATACATTCCCCGGTAACAGCAGTGTCATCATCAGTGTTTGTTTGTACCATGCATCCTGATTGGTTTAGTTTATTTTGGTCTGCTTCTCCcatatgttggatgtcttgtatATTTATTGTATAAATTTGGAATCAAAATCATTTTTACTATGCAAAGAACAAAGAATCTAACAGTTATGTAATTTATTTTGTAATATTTGTAATAACACTGAACAAATGTTTCAACTGGTCGTTTGTAAAGTCATTAATTGTGTATGCATTGTTTTTGGAAATATTGGATTTTTTTTCATTCAATACTTTGCCTTTCGGGAATAAAGAGAGGAATGTCCATTTGCTCTCTATTCATTGGTCAATGAGGTTCTGTGTGATAAGATGGATAAAACAATTAATAGCAATGTGTTTAATCGAGCAGGTAATAAGTTGTATATTTAATCAAATAATGGGTATTAATAACGGGTAAAAACGGTTTAATTACAATACATTGACACAGCATGGTATAAAATAACACTACAGTGCAGTGGCGACCCGTCTTTCaggcagagccccacctgttttgagtcCCACATTTtaagcaaaaaaaatatatatttttatatatattttttggggtacttgcctgttttgcatgttattttggcattaatacgtatCACATATCAGTTTCCAAACACTGTAAAAAATATATCATTGTGTTAATAAAGCTGCatgcaaacatgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1543758 lncRNA downstream 1496 19553298 ~ 19553596 (-) True G1350408
TU1543711 lncRNA downstream 38317 19478648 ~ 19516775 (-) True G1350361
TU1543187 lncRNA downstream 90910 19463898 ~ 19464182 (-) True G1349900
TU1543186 lncRNA downstream 91348 19463518 ~ 19463744 (-) True G1349899
TU1543182 lncRNA downstream 95833 19458918 ~ 19459259 (-) True G1349895
TU1543802 lncRNA upstream 50934 19632593 ~ 19633773 (-) True G1350445
TU1543808 lncRNA upstream 61489 19643148 ~ 19643768 (-) True G1350450
TU1544066 lncRNA upstream 363692 19945351 ~ 20006240 (-) True G1350629
TU1544070 lncRNA upstream 370567 19952226 ~ 20036837 (-) True G1350633
TU1544103 lncRNA upstream 425385 20007044 ~ 20007568 (-) True G1350665
XM_021565079.2 mRNA downstream 115333 19437195 ~ 19439759 (-) True LOC110491546
XR_002468846.2 mRNA downstream 122773 19411518 ~ 19432319 (-) True LOC110491545
XM_021565076.2 mRNA downstream 212953 19340326 ~ 19342139 (-) True LOC110491543
XM_021565071.2 mRNA downstream 229998 19310970 ~ 19325094 (-) False LOC110491541
XM_021567323.2 mRNA downstream 275757 19244110 ~ 19279335 (-) True sema4gb
XM_021565087.2 mRNA upstream 54677 19636336 ~ 19653981 (-) False mpp2b
XM_036946431.1 mRNA upstream 54677 19636336 ~ 19676499 (-) False mpp2b
XM_021565085.2 mRNA upstream 54677 19636336 ~ 19691342 (-) False mpp2b
XM_021565086.2 mRNA upstream 54677 19636336 ~ 19691342 (-) True mpp2b
XM_021565088.2 mRNA upstream 109957 19691616 ~ 19697820 (-) False LOC110491553
TU1543183 other downstream 93277 19461041 ~ 19461815 (-) True G1349896
TU1542973 other downstream 230038 19320870 ~ 19325054 (-) True LOC110491541
TU1542585 other downstream 920687 18634031 ~ 18634405 (-) True G1349366
TU1541907 other downstream 1131906 18417615 ~ 18423186 (-) True prr15lb
TU1540612 other downstream 2163138 17389385 ~ 17391954 (-) True LOC110491477
TU1543843 other upstream 110033 19691692 ~ 19697658 (-) True LOC110491553
TU1545321 other upstream 748741 20330400 ~ 20333729 (-) True LOC110491567
TU1545473 other upstream 1058567 20640226 ~ 20646198 (-) True LOC110491585
TU1545462 other upstream 1239040 20820699 ~ 20823122 (-) False h3f3d
TU1545463 other upstream 1239040 20820699 ~ 20823122 (-) True h3f3d

Expression Profile