RNA id: XM_036946431.1


Basic Information

Item Value
RNA id XM_036946431.1
length 3370
RNA type mRNA
GC content 0.45
exon number 12
gene id mpp2b
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 19636336 ~ 19691342 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggaggggaggagaggagaggagcttctCTCAGGCTGTCTCAGGTGTGAGTGTCTATGCAGCAGGTTCTAGACACTTTGAGTGACAGCACCAGCTCCACCATGGCCAATGACCTGGACCTCATCTTCCTCAAGGGCATCATGGAGAGCCCTGTGTTCCCGTCTCCCTGCTACCCGCAGGCCCATGAGAACCTGGAGGAGTCCAGGCTGGAGGCGGTGAgtgacaacaacatggagctcgtGCAGGACATCCTGAAGGAGCTCACTCCCCTCACGCACAGGAGCAAGGCCGCAGACGAACTGGCGTGCATACTGAAGGAGCCACACTTCCAGTCTCTCATGGAAACCCATGATTCGGTGGCCTCCAAGACCTTTGAGACTCCTCCTCCCAGCCCCTGTTCCTTCATGGACGCTGCCTTCAACAACCAGCCTGTGCCCCCAGATGCAGTCAGGATGGTGGGCATCCGCAAGGTGTCTGGAGAGCATCTGGGTGTGACATTTCGGGTGGAGAGTGGAGAGCTGGTGATCGCCCGCATCCTTCATGGCGGGATGATCGACCAGCAGGGCCTCCTCTACGTGGGTGACATTATCAAGGAGGTGAATGCAAAAGAGGTGGGCAATGACCCCAAGGTGCTCCAGCAGATGCTAAAGGAGGCCAGCGGCAGCGTGGTGCTCAAGATCCTCCCCAGCTACCAGGAGCCTCACACCCCACGCCAGGCCTATGTGAAGTGTCACTTTGACTATGACCCGTCCCATGACAACCTAATCCCCTGTAAGGAGGCAGGCCTGGGCTTCAGCAGTGGAGACATCCTGCAGATCTTCAATCAGGAGGACCTCAACTGGTGGCAGGCATGTCACCTGGAGGGGGGCAGTGCAGGCCTCATCCCCAGCCAGCtcctggaggagaagaggaaggcttTTGTCAAGAGAGATCTGGAGCTGGTTACAGCAGGTCCTCTTTGTTCTGGAATGGGcgggaagaagaagaaaaagatgaTGTATCTAACGACCAAAAATGCAGAGTTTGATCGTCATGAGCTGAGGATCTACGAGGAGGTGGCCAAGGTTTCCCCGTTCCGTCGGAAGACGTTGGTTCTGATTGGAGCACAGGGAGTGGGCCGCCGTAGTCTGAAGAACAAACTGTTGGTGTCAGACCCCCTGCGCTATGGGACCACCATCCCCTTTACCTCAAGGAAACCCAAGGTGGATGAAAAGGATGCACAGATGTACTCGTTCATGACTCGCAGTGAGATGGATTTGGACATTAAGAACGGGCGCTTCCTGGAGCACGGCGAGTACGACGGGAACCTCTATGGCACCAAGATCAACTCCATCCACGAGGTGGTGGACTCTGGCAAGATCTGCATCCTGGATGTCAACCCACAGGCACTTAAGGTTCTGCGGACGTCAGAGTTCCTTCCCTACGTGGTGTTTATTGAGGCTCCAGATTACGAGGTCCTCAAAGCCATGAACAAGTCTGCCAAAGAAGCCGGAGTGATGACCAAACAGTTAACGGACTCAGAGCTGAAGCGGACAGTGGATGAGAGCGAAAGGATCCAGCGGGCCTACGGACATTACTTTGACCTGAACATCATCAACGACAGCCTGGAGGGGGCCTTCTGCGGCCTGAAGATGGCGCTGGAGAGACTAGGCGCAGAGCAGCAGTGGGTTCCTGTCAGCTGGGTCTTCTAAAGGCCGGTCAGAGGTCAGAGCTAGAGGTCAGGATGTCATCATGAGGAGGTCAAAATAAGCATCAAAGGCCTGAGGAGTTGGTACAGGCCGCAGGTAGAGAGGGACCAATCAGGAGAGAGTAAATTGTAAAGGGGTGGAGCTTCCCTCCACAGCTTGTGACGTTATTGGTTGGAGGTCTGTTGTAAGGGGCCAATCCCGATGTTCCAGTGCAAGGGGTCTGCCTCATGGTAGGCTTTTGCACAAATTATATACTCCGCAGACATGATGTCAAACTGcaatttttgtttaaaaaaatatgtaaaaaataaacaaataaccaAATATATATTGGTATTTGTTGAGGAGGCTTTAGAGGGGATTTGAGGTACAGTGCGTAGTGTGTGAGTGATACGAGTggcagtatattatatatgttgaaGTAGGCTTATATATTTTGCAAATACTGTGCTGGCGGTCTTGGAGTATAATGGATATTGTTATACTACCAGGAGTTCCCTGACAATGTTTAGCCTTCCCAAATCTAACAAAAACTATGTAGTGCAATGTTTACATTGAGTGTTTCGTTTCGTGGCTGATTTAGAATACAAAGGTACCAACTGTCACACTATTCTTTATATGAAATTCGGTGTATTTTGTCATATGAGCGTACGATTGTAAATATTTGACAGTTGTCCTGATGTTACTGTACTTATTCTTATTTATGTTCTCTTTGTTGAAAAAAAGATAGCATAGCAATACATGATCTGAGACGAATACACCAATTCCCACATGAATGCATACCCACtcacacaaagacaaacacacagcaaTCAACAATGCATACATGTCAATACGCTCTATTTTCATCTTAAATTTCTTTGTTCTTTGTTaccatgtttttaaaaaaatcaaatgtgtgttttaaaaaaaattagtTTAATGTGCGAGATGTTGGAAATATTCAGTTGATCTTTTTAGCACAGATGTGACCACAATCGCTAAGTGTGAATATAGGCCCCTAAGAAATGTTTTAGATGATTGAAACAATGTTTAATTGAAACGGTGTAATTGTTTGATTTCTCTGCACACTTGTTCGTTTTACTTCATGTGGACTGTAGTGTCTGTCACTTATAGTGTCTGACTCTTTCTGAGTAGAATGTTTGTTTTGATGGACATATTTAGTTTATTTTCAATGTTGAttatacaggatatatatatatatagtaccagtcaaaagtttggacacacctactcatttcaatgtttttctttattttgactattttctacattgtataattatTTTCTACttcaaaattatgaaatagttTATCCAAaatagctactttgaagaatctaaaatatatttggatatGTTTAACGCTATTTtgattactatatgattccatatgtgttatttcatagttttgaggtcttcacttttattctacaatgtagaaaatagtacaaataaagaaaaccccttgaatgagtaggtgtgtccaaacttttgacaggtagcatatatataaaaaataagtgGCTTCCAACATGCTTACTTTGCCTTAACATGGTACAGAGGCCAAGGATATACTTACTGTACACTAGTTATAGGTTGAAATGTTATCTATTTTTCACATGCTGCAGCATGATTACTGTATGTTATCCCTTTCCCTatgattaaacaaatatatatgtataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1543802 lncRNA downstream 2563 19632593 ~ 19633773 (-) True G1350445
TU1543758 lncRNA downstream 82740 19553298 ~ 19553596 (-) True G1350408
TU1543711 lncRNA downstream 119561 19478648 ~ 19516775 (-) True G1350361
TU1543187 lncRNA downstream 172154 19463898 ~ 19464182 (-) True G1349900
TU1543186 lncRNA downstream 172592 19463518 ~ 19463744 (-) True G1349899
TU1544066 lncRNA upstream 268852 19945351 ~ 20006240 (-) True G1350629
TU1544070 lncRNA upstream 275727 19952226 ~ 20036837 (-) True G1350633
TU1544103 lncRNA upstream 330545 20007044 ~ 20007568 (-) True G1350665
TU1544137 lncRNA upstream 380076 20056575 ~ 20056817 (-) True G1350698
TU1544119 lncRNA upstream 413996 20090495 ~ 20113687 (-) True med24
XM_021565081.2 mRNA downstream 45440 19555092 ~ 19590896 (-) True LOC110491548
XM_036946428.1 mRNA downstream 54677 19555092 ~ 19581659 (-) False LOC110491548
XM_021565079.2 mRNA downstream 196577 19437195 ~ 19439759 (-) True LOC110491546
XR_002468846.2 mRNA downstream 204017 19411518 ~ 19432319 (-) True LOC110491545
XM_021565076.2 mRNA downstream 294197 19340326 ~ 19342139 (-) True LOC110491543
XM_021565088.2 mRNA upstream 15117 19691616 ~ 19697820 (-) False LOC110491553
XM_036946432.1 mRNA upstream 15117 19691616 ~ 19697840 (-) False LOC110491553
XM_021565091.2 mRNA upstream 36617 19713116 ~ 19719732 (-) False tut1
XM_021565089.2 mRNA upstream 36617 19713116 ~ 19720557 (-) True tut1
XM_036946440.1 mRNA upstream 47335 19723834 ~ 19743874 (-) False mki67
TU1543183 other downstream 174521 19461041 ~ 19461815 (-) True G1349896
TU1542973 other downstream 311282 19320870 ~ 19325054 (-) True LOC110491541
TU1542585 other downstream 1001931 18634031 ~ 18634405 (-) True G1349366
TU1541907 other downstream 1213150 18417615 ~ 18423186 (-) True prr15lb
TU1540612 other downstream 2244382 17389385 ~ 17391954 (-) True LOC110491477
TU1543843 other upstream 15193 19691692 ~ 19697658 (-) True LOC110491553
TU1545321 other upstream 653901 20330400 ~ 20333729 (-) True LOC110491567
TU1545473 other upstream 963727 20640226 ~ 20646198 (-) True LOC110491585
TU1545462 other upstream 1144200 20820699 ~ 20823122 (-) False h3f3d
TU1545463 other upstream 1144200 20820699 ~ 20823122 (-) True h3f3d

Expression Profile