RNA id: XM_021565089.2


Basic Information

Item Value
RNA id XM_021565089.2
length 3016
RNA type mRNA
GC content 0.53
exon number 10
gene id tut1
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 19713116 ~ 19720557 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCACATTTACCCGGATGAGATAGCGGATGGACTAAGGAGAAGAACGCACGGTGAACGAGGGAGGGAGATttgagaaaaacatttttttttactttgttgAATTGTTTATTTGGTTTCTTGCAAAATGGAAGATTTGGACAAAGACATACGATCCACTGCGAGAGGTTTTCATTGCATCCTATGCAATGTGAATGTACCCAATAAGGCCAGTCTGGATGCCCATGTGAAAGGGCGAAAGCATGTGAAGCTGAGCACAGTGCGGGCGACTCGGAAGGCTCAGGTGGAGAACAGTGTGTTTGTCAGTGGGATCAAACCGGATACAGCTCAAGCTGACCTTGTAGACTACTTCCAAAGGTTTGGACCAGTGTCAGAAGTCATCATGGACAAAGACAAGGGTGTGTACGCTATTGTGGAATTCAGTGAGAATGACAGTCTGCAGGCCACGCTGTCCCGGTTAGAGCACGACATGAACGGTCTGAAGCTGCGGGTGAAACCCAGGGAGAACAAGGAGTTCAAACTGATCCCTAAAAAGAGGCAGGATTCCAAGAACCTGCAGCAGATACTGGAGCGGCTCACCAAAGAGCTGTGCCAGACTGCTTCGGTGAATGAACAGATGCAGAGTGTGGTGGAGCGATTCCAGTTGGGGGAGAATGAGAAAAGGGCCAGAGAGTTACTAGTGCAACTGCTCCAGGAGGTGTTTACAGAGTTCTTCCCAGATAGTCAGATCCTGGCCTTCGGTTCCTCTGTCAACACATTTGACATCCACTCCTGTGACTTGGATCTGTTCCTGGACCTGGACAACACCAAGGTGTTCCAAGCTCGGGCCAAGAATTCTTCTGAACAGGCAGGGGAAGGCCCATCGGACGACACCCGCTCTGAGGACTCCATCCTGTCCGACATCGACCTCTCCACTGCCTCGCCGGCTGAAGTGCTAGAGCTGGTGGCGGCCATCTTGAGAAAGTGCGTCCCTGGGGTGCACAAGGTCATGCCAGTCAGTGGCGCTCGCCTCCCTGTGGTTAAGTTCATCCACAAGGAGCTCAACCTCCAGGGGGACGTGACCATCAATAATAGACTGGCGGTGAGGAACACCCGTTTCCTGCAGCTGTGCTCAGGGCTGGACTCCAGGCTGCGCCCTCTGGTCTACACCGTCCGCTACTGGGCTAAACAGAAGCAGCTGGCTGGTAACCCCAGCGGTGCTGGACCCTTGCTGAATAACTATGCTCTGACACTGCTGGTGATCTTCTATCTGCAGAAGTGTGACCCTCCAGTTCTCCCCACGTTGGACCAGCTGAAGGACATGGCCTGTGAGGAAGAAGAGTGCGTGATCGAAGGCTGGAACTGCACCttccccagtcagcctattgcTGTGCCCCCCAGCAAGAACACCCAGGATCTGTgTGCCCTGCTGTCAGGCTTCTTCTCCTTCTATGCCCAGTTTGACTTTGCCAGCTCTGTCATCTCCATCAGGGAGGGCTGCTCTCTCCCTGTCACCAGCTTTCTTAGCCGAGACAAGGTAAAGGGGGAAGGGGAGGCCATGGAGCAGGAGAGGTCCTCAGGCCCCAAGCTGGGCCCCCTCAATGTGCTGGACCCCTTTGAGCTGCACCACAATGTTGCGGGCAACCTGACTGAGCGCAGCCAGAGGAGCTTTCAAAGGGAGTGCCAGGAGGCAGAGAAGTACTGCCGCAGCCTGCAGTACATGCGCAAGTCCACCAAAGGTAAGGTGTGGGGCCTGGTGCGCCTTTTCACCCCCCGGGATGAGGGCCCTCACCACCACAAGGGGGCTGAGGGGGCAGAGCGGGAACTAGCCATCAGCATCCCCTTCAAGGCGGCGTCGCTCCCCGAGGTGGTCCGCAGCCAGCTGCACTCTGCCGGGGACGGCTTCCGCTTGCTCTGGTTCCAGAGGGTGTGCTCTGCTGTGGAGGGGGTGATTCAGGGAGTCCTTAAGTGCAGCCTAACTAACACTGGCATGGGGGAAAGCACTGGAGCTGACGGAATGGATACTGCGTCTCCGATTAGCAAATCGACAAACGACCACGGTGAGAACGCCAGCCTCCTTGCCTCCAGTGACTGCAGCCCACAGAGCAAGGGCACCCCAGGAACCAAGAGACCCCTGCTGTCCTCTGAGAGCAGTGGTGACTCCGTGTCCCCGCAGGGCAAGAGGCCCAGGTTGGACAGTTACATCGGGTCCCAGCCCGATTCGCCACACTGGACCTACATCCAGAGGCACAGGGTGTGGGCGGGCCGGCGGAAGGTAAGGAGGGAGCTGCTTAAAGGGGGAATGGACATGGACTCCAGGCCAGAGGGCAGCAGTGTGGAGCTGGAGACCCAGGTGACCAAGCACATTGTGGACAAGGAGCCAGAGGACAAGGAGCCGCTCGAGTTCCAGGTTCAGGCCCAGGTGGTGGGTGGCACAGAGAGCACCAAGGCCGTGATCAAGTTTCGACCCTCTGCCGATGGTGCCGGACTGTTCCAGGACTTCTTTCACTTCCTGGAGATGTTCCTGCCCAAGATGGCCGACACACTGATGGGGAAGACTGGGTAGATGATGTCAGATGACGTCAGACTGTTTTGTAAAAGGGTTGTGTGGGTTCTGATAAACATCACTTTTAGGTTTTTTCTTCTGAATAGTGGAAGAGTGGTTGAAACTGGCCACTTTGCACTATTTTCATATTATgggagattttttgttgttgataaatCTAAAGGAGTTGTCTCTTCTCTAAAACGGATCTGACCAAGATGGCTCTGAAGTGTTATGAAAGAGCTTGAGTAATGGCTTTGATAAAGCCATGAAAATATTGTGAAAATTGATTGTGCGCTGTCATGCTATTAAGTTACGTATGTTTTACTTGTTTTAGATTAGGGTTGGCAAGTGCCCTGCAGCAATGCACTCCGTTGTATTGTTTCAGTGATTTGTTTAGTTTGACATCTTGTTTTATGGGGGTTGAAGGAAATTAAAGGCTATTGAATACTGTTCTCAACAGTTGGAATTAaatgaaaaacatattttatcAAG

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K18709 TUT1; speckle targeted PIP5K1A-regulated poly(A) polymerase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1543808 lncRNA downstream 69348 19643148 ~ 19643768 (-) True G1350450
TU1543802 lncRNA downstream 79343 19632593 ~ 19633773 (-) True G1350445
TU1543758 lncRNA downstream 159520 19553298 ~ 19553596 (-) True G1350408
TU1543711 lncRNA downstream 196341 19478648 ~ 19516775 (-) True G1350361
TU1543187 lncRNA downstream 248934 19463898 ~ 19464182 (-) True G1349900
TU1544066 lncRNA upstream 224794 19945351 ~ 20006240 (-) True G1350629
TU1544070 lncRNA upstream 231669 19952226 ~ 20036837 (-) True G1350633
TU1544103 lncRNA upstream 286487 20007044 ~ 20007568 (-) True G1350665
TU1544137 lncRNA upstream 336018 20056575 ~ 20056817 (-) True G1350698
TU1544119 lncRNA upstream 369938 20090495 ~ 20113687 (-) True med24
XM_036946432.1 mRNA downstream 15276 19691616 ~ 19697840 (-) False LOC110491553
XM_021565088.2 mRNA downstream 15296 19691616 ~ 19697820 (-) False LOC110491553
XM_021565085.2 mRNA downstream 21774 19636336 ~ 19691342 (-) False mpp2b
XM_021565086.2 mRNA downstream 21774 19636336 ~ 19691342 (-) True mpp2b
XM_036946431.1 mRNA downstream 36617 19636336 ~ 19676499 (-) False mpp2b
XM_036946440.1 mRNA upstream 3277 19723834 ~ 19743874 (-) False mki67
XM_036946433.1 mRNA upstream 3277 19723834 ~ 19743882 (-) False mki67
XM_036946434.1 mRNA upstream 3277 19723834 ~ 19743882 (-) False mki67
XM_036946435.1 mRNA upstream 3277 19723834 ~ 19743882 (-) False mki67
XM_036946436.1 mRNA upstream 3277 19723834 ~ 19743882 (-) False mki67
TU1543843 other downstream 15458 19691692 ~ 19697658 (-) True LOC110491553
TU1543183 other downstream 251301 19461041 ~ 19461815 (-) True G1349896
TU1542973 other downstream 388062 19320870 ~ 19325054 (-) True LOC110491541
TU1542585 other downstream 1078711 18634031 ~ 18634405 (-) True G1349366
TU1541907 other downstream 1289930 18417615 ~ 18423186 (-) True prr15lb
TU1545321 other upstream 609843 20330400 ~ 20333729 (-) True LOC110491567
TU1545473 other upstream 919669 20640226 ~ 20646198 (-) True LOC110491585
TU1545462 other upstream 1100142 20820699 ~ 20823122 (-) False h3f3d
TU1545463 other upstream 1100142 20820699 ~ 20823122 (-) True h3f3d
TU1545802 other upstream 1488906 21209463 ~ 21210794 (-) True G1352220

Expression Profile