RNA id: XM_021565116.1



Basic Information


Item Value
RNA id XM_021565116.1
length 853
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC110491567
representative False

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 20330400 ~ 20334029 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACCTATATCAATTATCTACTAGTAACAGGCGGACAGAATTCCTGTTAAAATGCCACTTCCTCAACTGCAAAATGTAGGCTATCATGTTTTGCCATACACCTACCTATAATATCACACAAATTATGGCAATTACCATATTTTTGGTAAAACGAAAGGTTTCCAGTGATTTATCCTTAGTTGTATGTGATCGATCTTGCACATGATTAAACTATCTCAGTCATTCCAATGTGACCTGCGTCCGCCATACCGTTTTGATAGGACTGCACGGCTACAACAGCCACAAGACCAGCGCGCGCGCAAGGGCGCACTTCAGTCTGATGAGGGAGCCTAAGCGTGGTGTTCGGGTATCATCATCTTTAGTACAATAGTCACTTTGAACAACGCAGCACTTGCCACAAAGAACTAAAAATGGCAGAGGATATTGCGACTAAGCTCCAGAACTACCGCACTGCTCCCTTCGATGCCAGATTCCCCAATCAAAATCAGACAAGGAACTGCTTCTACAACTATCTGGATTATCATCGCTGCCAAAAATCCCTGGACGCCAAAGGAGTCGACACTGCCCCGTGTGACTGGTATAAGAGGGTCTACAAATCACTGTGCCCCATTTCCTGGATCCAGAAATGGGACGACCAGAGGGAGGCGGGGACCTTCCCAGGGAAAATTTGAATGGCATCTCCAAAGAAGTGTACTTCATGGCAATATGTTTGTATGAGTAGGACTCCTGGTCGGTCGTCCACTACTCCTCTGGAATGTGAGCAGAGTATAACTGAACACCGTAGTCATTCCTTATCATAGAGAATAATTGTGTTGCAGATTCTGCATTAAAGTGTCTTGGGCGATGTTTATCAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1545358 lncRNA downstream 17971 20311425 ~ 20312434 (-) True G1351816
TU1545340 lncRNA downstream 49149 20280826 ~ 20281256 (-) True G1351804
TU1545338 lncRNA downstream 49638 20280427 ~ 20280767 (-) True G1351802
TU1545337 lncRNA downstream 50039 20280098 ~ 20280366 (-) True G1351801
TU1545334 lncRNA downstream 53650 20276531 ~ 20276755 (-) True G1351798
TU1545375 lncRNA upstream 41223 20375252 ~ 20375533 (-) True G1351830
TU1545378 lncRNA upstream 43527 20377556 ~ 20386225 (-) True G1351832
TU1545391 lncRNA upstream 60553 20394582 ~ 20402250 (-) False G1351844
TU1545392 lncRNA upstream 65499 20399528 ~ 20402250 (-) True G1351844
TU1545396 lncRNA upstream 70563 20404592 ~ 20404827 (-) True G1351848
LOC110491568 mRNA downstream 43441 20285809 ~ 20286964 (-) True LOC110491568
XM_021565106.2 mRNA downstream 162763 20153681 ~ 20167642 (-) True kcnj12a
XR_005036470.1 mRNA downstream 205871 20083758 ~ 20124534 (-) False med24
XR_005036466.1 mRNA downstream 205874 20083758 ~ 20124531 (-) False med24
XR_005036465.1 mRNA downstream 205875 20083758 ~ 20124530 (-) False med24
XM_021565119.2 mRNA upstream 5080 20339109 ~ 20346615 (-) False fam234a
XM_021565120.2 mRNA upstream 5080 20339109 ~ 20346645 (-) False fam234a
XM_036946457.1 mRNA upstream 5080 20339109 ~ 20347491 (-) True fam234a
XM_021565117.2 mRNA upstream 19853 20353882 ~ 20366564 (-) False LOC110491569
XM_021565118.2 mRNA upstream 19853 20353882 ~ 20366564 (-) True LOC110491569
TU1543843 other downstream 632747 19691692 ~ 19697658 (-) True LOC110491553
TU1543183 other downstream 868590 19461041 ~ 19461815 (-) True G1349896
TU1542973 other downstream 1005351 19320870 ~ 19325054 (-) True LOC110491541
TU1542585 other downstream 1696000 18634031 ~ 18634405 (-) True G1349366
TU1541907 other downstream 1907219 18417615 ~ 18423186 (-) True prr15lb
TU1545473 other upstream 306197 20640226 ~ 20646198 (-) True LOC110491585
TU1545462 other upstream 486670 20820699 ~ 20823122 (-) False h3f3d
TU1545463 other upstream 486670 20820699 ~ 20823122 (-) True h3f3d
TU1545802 other upstream 875434 21209463 ~ 21210794 (-) True G1352220
TU1545820 other upstream 927035 21261064 ~ 21262569 (-) True si:ch211-183d21.3

Expression Profile