RNA id: TU1545321


Basic Information

Item Value
RNA id TU1545321
length 558
RNA type TUCP
GC content 0.47
exon number 4
gene id LOC110491567
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 20330400 ~ 20334029 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGCGCACTTCAGTCTGATGAGGGAGCCTAAGCGTGGTGTTCGGGTATCATCATCTTTAGTACAATAGTCACTTTGAACAACGCAGCACTTGCCACAAAGAACTAAAAATGGCAGAGGATATTGCGACTAAGCTCCAGAACTACCGCACTGCTCCCTTCGATGCCAGATTCCCCAATCAAAATCAGACAAGGAACTGCTTCTACAACTATCTGGATTATCATCGCTGCCAAAAATCCCTGGACGCCAAAGGAGTCGACACTGCCCCGTGTGACTGGTATAAGAGGGTCTACAAATCACTGTGCCCCATTTCCTGGATCCAGAAATGGGACGACCAGAGGGAGGCGGGGACCTTCCCAGGGAAAATTTGAATGGCATCTCCAAAGAAGTGTACTTCATGGCAATATGTTTGTATGAGTAGGACTCCTGGTCGGTCGTCCACTACTCCTCTGGAATGTGAGCAGAGTATAACTGAACACCGTAGTCATTCCTTATCATAGAGAATAATTGTGTTGCAGATTCTGCATTAAAGTGTCTTGGGCGATGTTTATCAAACTGAA

Function

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005739 mitochondrion cellular_component
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1545358 lncRNA downstream 17966 20311425 ~ 20312434 (-) True G1351816
TU1545340 lncRNA downstream 49144 20280826 ~ 20281256 (-) True G1351804
TU1545338 lncRNA downstream 49633 20280427 ~ 20280767 (-) True G1351802
TU1545337 lncRNA downstream 50034 20280098 ~ 20280366 (-) True G1351801
TU1545334 lncRNA downstream 53645 20276531 ~ 20276755 (-) True G1351798
TU1545375 lncRNA upstream 41523 20375252 ~ 20375533 (-) True G1351830
TU1545378 lncRNA upstream 43827 20377556 ~ 20386225 (-) True G1351832
TU1545391 lncRNA upstream 60853 20394582 ~ 20402250 (-) False G1351844
TU1545392 lncRNA upstream 65799 20399528 ~ 20402250 (-) True G1351844
TU1545396 lncRNA upstream 70863 20404592 ~ 20404827 (-) True G1351848
LOC110491568 mRNA downstream 43436 20285809 ~ 20286964 (-) True LOC110491568
XM_021565106.2 mRNA downstream 162758 20153681 ~ 20167642 (-) True kcnj12a
XR_005036470.1 mRNA downstream 205866 20083758 ~ 20124534 (-) False med24
XR_005036466.1 mRNA downstream 205869 20083758 ~ 20124531 (-) False med24
XR_005036463.1 mRNA downstream 205870 20083758 ~ 20124530 (-) False med24
XM_021565119.2 mRNA upstream 5380 20339109 ~ 20346615 (-) False fam234a
XM_021565120.2 mRNA upstream 5380 20339109 ~ 20346645 (-) False fam234a
XM_036946457.1 mRNA upstream 5380 20339109 ~ 20347491 (-) True fam234a
XM_021565117.2 mRNA upstream 20153 20353882 ~ 20366564 (-) False LOC110491569
XM_021565118.2 mRNA upstream 20153 20353882 ~ 20366564 (-) True LOC110491569
TU1543843 other downstream 632742 19691692 ~ 19697658 (-) True LOC110491553
TU1543183 other downstream 868585 19461041 ~ 19461815 (-) True G1349896
TU1542973 other downstream 1005346 19320870 ~ 19325054 (-) True LOC110491541
TU1542585 other downstream 1695995 18634031 ~ 18634405 (-) True G1349366
TU1541907 other downstream 1907214 18417615 ~ 18423186 (-) True prr15lb
TU1545473 other upstream 306497 20640226 ~ 20646198 (-) True LOC110491585
TU1545462 other upstream 486970 20820699 ~ 20823122 (-) False h3f3d
TU1545463 other upstream 486970 20820699 ~ 20823122 (-) True h3f3d
TU1545802 other upstream 875734 21209463 ~ 21210794 (-) True G1352220
TU1545820 other upstream 927335 21261064 ~ 21262569 (-) True si:ch211-183d21.3

Expression Profile