RNA id: XM_021565120.2


Basic Information

Item Value
RNA id XM_021565120.2
length 3223
RNA type mRNA
GC content 0.50
exon number 12
gene id fam234a
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 20339109 ~ 20347491 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGCTGAAACGTAAAACGGGTCTGTTCGGGCTATGACACATTGCTGAAGAGATAATGGAGCCAACAGACCATGCCACAGAAGCCGACCCCctgaagagggaggaggatggggttGAGGGTGGTGGAACTGCACCACCAGCGCCGACCAAGAAGAAGAGTTTGGGTCTGGCCAAGTTGTCCCACTGGAGGACGGCtgccttcttcctctccctcttcctctgcctcATCATCGTCTTCGCCTTCTCTTTCATCATCCCCTGTCCCGTCCGTCCGCAATACCTCACCTTCTGGAACCGCACCTTCCCCCAAGCAGCCACCTATGATTTCCTGGCCATTGAGGATGCAAGCAAAGACAAAGTGATGGACGTGTTGTTTGTCCTGAAGGCGCAGGAGGGCAGTCAGAACGTTAGTTGTTTGGCTGAAGGTCTGGACACaccttgtgtgtttgtgtcggcGGTAGCAGGGACCAACGGGGAGACTCTGTGGGAGCGGCCCTTGGCCCCTGAGTTCCACTGGGCCCAGTGTGGTCTGGACGGCCTTGGAGAAACCGACAGGGGCTGCCTGCTGTCTCACTCCAACCAGCTCACTGCCATCAACAAATACACTGGAGTGGTGACGTGGGCGCGGCTCCAGCCTCCCAACCTGAGGAGTACCTTACCGGTCCTCAGTGTCTCAGACCTGGATGGGGACGGGGTAAGCGACGTGGCTCTGGTGGCGCCCAGCCCAACGCAGACACAGCTGGCGATCCTCTCAGGGAAGACCGGTGTCCAGATTGGCTCAGAGGTGGTTCTTGACACCGCTGAGTGTGCCATGCATCTCCTCCACTCCACAGGGAAAGGCTCCAACTATGTACTGCTCCAGAAAGACTCGGGATTGTATGGCCTGGCCCTGTGGAGGATTGCAGCCCAGGCTAAGGCAGGCATGGAAAAAGGCCTCAAGAAGGACAAGCACTGGGAGCGCAAAGCCAATGACTCCTCTGGCCTTGTATCAATCTATGAGTCTGGGACATTGAGATACGTGTTAAGGACAGGGAAGGCAGAGGGTCCCTCCAACCTACTATTGGTCACTGGGGGCAGTGTGGTGCTGATAGATGGTGACAGTCTGAACTTACTGTGGAGAGTCAACACCAGCACAGTCCTCAGCGAGCCTTCTTTTGGCCACTTCAACAAAGATGGCACACTCGACATAGTGATCGAGGAGGACATTGGCAACCGCATTAAAAGGGTGGTGATCCTGGACGGAAACACTGGAGGCACAGTGTGGGAGGTCAACCTACTGGCCAGCCCCAACTCACCCAAGCCAGCCTCAGTCAACACCATCAACTCCTTCTCTGTGTTCATGTTCTGGGGGCTGATGCCCTCCGAGGCCAACACTACTAGGGATTTGAGTGAGGAGCGGCGCTCCTACATGCTGTATCCCCACTACTCCTCAGTTCTCCTGGAGAAGAGCAACGTCATGGACCACATCATCGCGTTTAAAGccactctgTTGGAGCGGGGGCGCCACGCCTGCTACATCATGTTGACGGGGCCCGAGGGGGAGGGGGCCGAGGGGACGGTGGACCTTAGCAAGCGCAAACTGAAACAGGACGTCACCGACAGCCGGGTCCTCCGCCTGGGCTCCCTAAGCAGCAAAGACACTAACGAGGACATCAAAGAGGCCTTCCAGAGACTGCGTTTCAGCGATGAGTGACAGGCCACTGTTACCATGACAACATTGCTGCTGATATCGAAACTGTGTTACAATAGATATGACAACCGTTACTGCTGACAATCAACCAACTGTGTAGCTATGGTTACCTTAAAGCTGACTACTAAACCTTCTTCTGCTGACCTTGTATTCCAACTGTCCCATCATGACAATCAGATTAATTTAGCTCAGTTTTCTTAGGGTGGAAATAGGCAAGGTAGAGGCAGACTTGGCTTTGGGTCGATGCAACCAATAACTGCACTAATCACAGAAGACTGCCAGGGCATACCAACCAGGCAATATGGTATTATCAGGTACTGTATCTGAATTCATTTATGCACAACTAGTAGGCTACCGTGTGGGATAGTTTTTAGATACCTTTGCTGTAGCAACTTCAGCCTCTGTAAAGGTGGCTAAAGTGACTAAGCGTTTATGTTATGCAACAAAAAGAGGCACTAAAAGCCCCAAAGAGCTGCATGGGCAACCCTGTGGTTAGTGGAAATATCTTAAGGGTACTGCTTCCATATAAAATTACAAGTCATAGCCTTATATTGTAGCCAGAGGTACTGTGGTAGATGACAATCAGATGAAACTAGTAGCAGGTACTGTACTATTCCAAGTTGCTGTGAATTAGGGTATAATTTAAATGCACATTGACATAGCTGTAGGCCCTGTATGAGGGACTCAAGCCTTGAAAGTTGAACGTTTCTGGTGATCTGTGTGTTGATGTTCAAATCAGGCAAAAGATAAAGGGAAAGCTTGAGAAAATtcttatgcccccccccccccccccccatctcttaaAAAAAATGCTTTAAAGTGATCTTGAATGGGAATGAGGGTTTTATAGTTTGCCTTATACATGAATATATTGAACCTTCTTTTTGAGATGATTTTTCCTtctttttacttatctattgatCTCTAAAAACATTTTTCAGATCTGAGCGAGCCGACACCCGCATAGCTGTTGTTTTTGCAGTGTTGGAGGAGGAACTTGGGGCTCTATTCAACCCGTATCACCGAAGTTCAGCTTTGTAGTGTGATTGAAATGCAAAGGCATGTTCGCGCTTTAGCGGCAaccgcattcacggtaaacgctacATGTCGGCCCAATTGGAAATGACCTTTTACATTTCTATCGCTGAATCTGCAACCAGAAATAGCTATTGGTTTTCTGGTTCGTTAAAAGAGCTAAACTTAGATATGTTTTTGTTGGTTTGATAAATTAGACCATGCCCATTTCAAGCTTATCTTTCAAAAAAAAGTTACATCAGAATATTTAgccaagttagctggctaactcattgatcctatTTTGtagtattaccccccccccccccccccccccacagctttCGAAGTCCCTGATTTTAGACACAATTTGCTGTGTAGTTGCGTATCAGCCAGACTAGGTGGAATTGCATGAGCTGCCAATTCCGCAAGCTGCTCCAAGCATAACTggtgccacgttcaaaacaactgggaacttggaaatgTCCAACTTCAGTGTATTCAAAACAACTGaactcgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1545358 lncRNA downstream 26675 20311425 ~ 20312434 (-) True G1351816
TU1545340 lncRNA downstream 57853 20280826 ~ 20281256 (-) True G1351804
TU1545338 lncRNA downstream 58342 20280427 ~ 20280767 (-) True G1351802
TU1545337 lncRNA downstream 58743 20280098 ~ 20280366 (-) True G1351801
TU1545334 lncRNA downstream 62354 20276531 ~ 20276755 (-) True G1351798
TU1545375 lncRNA upstream 28607 20375252 ~ 20375533 (-) True G1351830
TU1545378 lncRNA upstream 30911 20377556 ~ 20386225 (-) True G1351832
TU1545391 lncRNA upstream 47937 20394582 ~ 20402250 (-) False G1351844
TU1545392 lncRNA upstream 52883 20399528 ~ 20402250 (-) True G1351844
TU1545396 lncRNA upstream 57947 20404592 ~ 20404827 (-) True G1351848
XM_021565116.1 mRNA downstream 5080 20330405 ~ 20334029 (-) False LOC110491567
LOC110491568 mRNA downstream 52145 20285809 ~ 20286964 (-) True LOC110491568
XM_021565106.2 mRNA downstream 171467 20153681 ~ 20167642 (-) True kcnj12a
XR_005036470.1 mRNA downstream 214575 20083758 ~ 20124534 (-) False med24
XR_005036466.1 mRNA downstream 214578 20083758 ~ 20124531 (-) False med24
XM_021565117.2 mRNA upstream 7237 20353882 ~ 20366564 (-) False LOC110491569
XM_021565118.2 mRNA upstream 7237 20353882 ~ 20366564 (-) True LOC110491569
XM_021565126.2 mRNA upstream 114479 20461124 ~ 20469565 (-) True LOC110491577
XM_021565140.2 mRNA upstream 277243 20623888 ~ 20625318 (-) True LOC110491584
XM_021565139.2 mRNA upstream 279091 20625736 ~ 20629469 (-) False znf668
TU1545321 other downstream 5380 20330400 ~ 20333729 (-) True LOC110491567
TU1543843 other downstream 641451 19691692 ~ 19697658 (-) True LOC110491553
TU1543183 other downstream 877294 19461041 ~ 19461815 (-) True G1349896
TU1542973 other downstream 1014055 19320870 ~ 19325054 (-) True LOC110491541
TU1542585 other downstream 1704704 18634031 ~ 18634405 (-) True G1349366
TU1545473 other upstream 293581 20640226 ~ 20646198 (-) True LOC110491585
TU1545462 other upstream 474054 20820699 ~ 20823122 (-) False h3f3d
TU1545463 other upstream 474054 20820699 ~ 20823122 (-) True h3f3d
TU1545802 other upstream 862818 21209463 ~ 21210794 (-) True G1352220
TU1545820 other upstream 914419 21261064 ~ 21262569 (-) True si:ch211-183d21.3

Expression Profile