RNA id: TU1545473


Basic Information

Item Value
RNA id TU1545473
length 2684
RNA type TUCP
GC content 0.40
exon number 5
gene id LOC110491585
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 20640226 ~ 20650176 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCTAGCTTTTCCATGGTGAAAAACAAAACGGGCTTTTCATCAGATGAACTTTCGGGAATTTCGTTTATACAAGAAACATGGCTTCAAACATTATCTGTGCGCTTTGTGGACTTGTCATTGCGACTGTAGCGAACCTAAACGGCGCGAACGGGCAACAAAACCTATGCAGTAGTTCAGAGTTCTGGAGTTCGGACATAGACCAATGCGTATCCTGCTCATCGTGCAAGCAGTATCCAAAGACCCCTTCGTGTAACACTTGCACATTTACCAAGGAAAGATCTGATGTCTGGAGACTGGCAGCCATTTCCAGCTTCTCTGTGCTGGCAGTTATTCTGGTCGCTGCAGTATTGATCATTGGAGTCATGGTGCATCGACGCAAGGCACAGAAGAGGCCCCTCCGTGAACCCATTGAAGAGACAACGGGACCTCTTTACCAAGCGTAAACATTTCACCTCATCTTCCTTCTGACATTGATGTGACAGAACCAAGGGAACATCTTTGGATGACCAACCGAAACAGAATCATTTTTTGTACTATGGATAATACTCTGACCACAGGGTATTATTTGAGTGGAGTTTGACCATTTAATTTATTATACTGTTAGTAAAGATGTGTTCACATACACTCAGTGTGTTACGGAACGGAGCTCTCACAAAGAACTGTGTTAACAAGCGCTGTCAATCCCCTACCTTGTCTGCAGTCAGACTGTACTCTGAGTAAGACAATGTAGTTAGTAAAGAGTATCTCTCACAGCTCTTTTTGAAATGAAATGATGGCCTttgagtagtgatgctaggttGAGCTTGTCTAGATATTCCAATAATCTATCTATCGATAAGTAAGTTGTTCAATCCATAAGTAGTTTAAAAAACAGTAGTGAACATGAGACACATCTTGAATGATGTGGATTTCCAACCGTTTCTGTCAATGCTTGAACACCTGTTGTTTTATTGTAGCTTATTAGGACGAATACCAACTACCGAACTGCCTCGACTTGCCATCAGCAGGACAAAAGTGAATACAGCACAATCGTGCTTCCTGGGCCAGGTTTCACATACTCTACTTCTATAAGAGTAACGTTTCCATTTAACATCCTCGTGATAATGAAAAGTAAAAGGGAAATGTTAGATTATAAATTCATGTTGGGCACATTTTGGCAATTTGAATGTACTTTTAGGGCAATTTATCCAGTCTGTGTTTCCATGTAGGAACTATATGCACTTAGAGCTAGTTGTTTTTTAACTCATCATTTTTAAAGGAGTAGAATTATTTTAACAGTATCGTGCACTGTACTCTCTAGGATCTTCCAATCAAAAGAGGCAAAGGGGAAAATAAGTGAACTGATTATGAAACTGCGTATTGGACATTCTTACATAGGTCATTTAACCATTATACTGTAGTATGTGTGTATGCAGGATAAGTAGTATAACACAGGGGCTTGCAAACTGTCGTGATGGAAAAGTTCAAGGTGGTCCAGAATCCTGTGGGAATGTGTTTGTATagttcagggatgggcaactttgatgggggtgggggccacaaaaaaaatctgaacacaTCATGAGGGGCCACTGTTGTGCCGCCACCCAATTCTACACATCTCGCAATatggtggagagaaatgtttgcagttttaatTATATCTAACtgagactgactaacaaaatcaatgccccccccccccccctgggtgGTAATTTGACCacgattactacaagtttagatggCTGAgcactagactaatttaccaatctaaaaaatgttagctgacatggactAATTGAGGAAcaagaaaaactgctgatgcacaaccaaatttctaaatggcaccttgtgtattctcctattctaactctcaacagtaagttgagaccctgactAAGCCCTTCCACCTGTTGCCAATCCCTGGTATAGTTTATActgtttttttcttatttttacaattaaatccattccCGATGGACAAATAGGGAAGCCTTAGCGTTGTGCTCTCCACAGTTGAAACAATGGAGATGAGTCAATGCTtgtgtgacattttttttttaacactatTAGACACTGACTGCCAACCCAGGAAGGAACATTGCAATTTAGGGAAAAACAAACTGAACCCTATTGAAATGTATAACCATGGTATAACTGTGTACTCATCTTCAAACTAACTCAGAGCACAATTTTAGGGCTTGTGTGTCAGGATAATGTGGGTGGCTGAATATGACTTAATTCATATTACTGACAATATTACTTTCTTATCAATATTAAGTGGATATGTATACCAGCAGCAAGAAAAGGGTCATTGGACAATTTTTATACAGATATTGTtttcatatatatttatttagaATTATATATTTTCTAATGTTTATGTGGTAACAGCTAAATGTATGAATAAATACTGACGAAGGGACACCTGTAAAGTTGTTTGTAAAACCTCTGACACCAGCTGACCAATTAGATTTGTTACTGAGCAATCATTTAGGGCTCCATTCAATCTATCGGTGAAGTGGTAAAGGTCAATGGCAGTGTAAAGGTCATTTCAGATTGAGCCGTCATATGCAGcatttaccatgaatgcagtctccgctgaCGCGGAAACATAGCCTTTAAATTTCAACGCTAAACTTCCGTATTTGGATTGAATATTGCCCTAGTGAATGTACTTTTCGTCTGTTTGGGTTGTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1545543 lncRNA downstream 36598 20599284 ~ 20603628 (-) True G1351980
TU1545540 lncRNA downstream 39169 20597145 ~ 20601057 (-) True G1351978
TU1545512 lncRNA downstream 53471 20584019 ~ 20586755 (-) True G1351951
TU1545407 lncRNA downstream 215068 20424928 ~ 20425158 (-) True G1351859
TU1545402 lncRNA downstream 223046 20416876 ~ 20417180 (-) True G1351854
TU1545557 lncRNA upstream 27750 20673948 ~ 20729877 (-) True G1351994
TU1545482 lncRNA upstream 36750 20682948 ~ 20687423 (-) True G1351925
TU1545586 lncRNA upstream 100431 20746629 ~ 20748225 (-) True G1352021
TU1545617 lncRNA upstream 185447 20831645 ~ 20831870 (-) True G1352051
TU1545691 lncRNA upstream 301080 20947278 ~ 20947694 (-) True G1352113
XM_036946470.1 mRNA downstream 10691 20625736 ~ 20629535 (-) True znf668
XM_021565139.2 mRNA downstream 10757 20625736 ~ 20629469 (-) False znf668
XM_021565140.2 mRNA downstream 14908 20623888 ~ 20625318 (-) True LOC110491584
XM_021565126.2 mRNA downstream 170661 20461124 ~ 20469565 (-) True LOC110491577
XM_021565117.2 mRNA downstream 273662 20353882 ~ 20366564 (-) False LOC110491569
XM_036946471.1 mRNA upstream 5167 20651365 ~ 20664316 (-) False rnf40
XM_021565142.2 mRNA upstream 5167 20651365 ~ 20664686 (-) False rnf40
XM_021565143.2 mRNA upstream 5167 20651365 ~ 20664686 (-) False rnf40
XM_021565144.2 mRNA upstream 5167 20651365 ~ 20664686 (-) False rnf40
XM_021565141.2 mRNA upstream 5167 20651365 ~ 20664781 (-) True rnf40
TU1545321 other downstream 306497 20330400 ~ 20333729 (-) True LOC110491567
TU1543843 other downstream 942568 19691692 ~ 19697658 (-) True LOC110491553
TU1543183 other downstream 1178411 19461041 ~ 19461815 (-) True G1349896
TU1542973 other downstream 1315172 19320870 ~ 19325054 (-) True LOC110491541
TU1542585 other downstream 2005821 18634031 ~ 18634405 (-) True G1349366
TU1545462 other upstream 174501 20820699 ~ 20823122 (-) False h3f3d
TU1545463 other upstream 174501 20820699 ~ 20823122 (-) True h3f3d
TU1545802 other upstream 563265 21209463 ~ 21210794 (-) True G1352220
TU1545820 other upstream 614866 21261064 ~ 21262569 (-) True si:ch211-183d21.3
TU1546036 other upstream 1034231 21680429 ~ 21724898 (-) True capn15

Expression Profile