RNA id: XM_021565189.2


Basic Information

Item Value
RNA id XM_021565189.2
length 1589
RNA type mRNA
GC content 0.47
exon number 10
gene id decr2
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 21300961 ~ 21306119 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCACTTGTCGTTTCACAAAAAAATGGGTTCAAGGTACAGTATTTTCATGACCAGAGAGCAAATTTTCTGTTTGACAATTTAGTGAATTTGTAATCGTCTTGGGTCGCAATTTGTGAAGTTAATCTGCAACAGAGTGCATTTGGTCGTCAAGAGACGTTTGTGAGGCGGTGTCATTACAGAGGAGAAGCTACAACAGGAAAAGCACAAGAACACTGTCGGCACCTTTGGAACATCAGTATGGCAGAGCCACAGAGGGTGAGAGATTTGCCTGAGGATGTAGACACAGATGACTGCATGACTTCATACACTCACATTTACAGTCCAGATTTACTCAAAGACCAAGTGGCGTTCATAACTGGAGGGGGAACTGGAATTGGACTGCGCATAGCTGAAGTGCTCATGAGGCACGGCTGTGACACAGTGATTGCCAGCAGAAACTTGGAAAAGCTGACAGAGGCTGCTAAGAAGCTGATGGCAGCAACTGGACGCCGCTGTCTCCCTCTGCCCATTGACGTGCGACAGCCCCAGACCATCTCCGCTGCCGTGGACGAGACGCTGAAAGAGCTGGGCAGGATTGATATCCTCATTAATAATGCTGCTGGAAACTTCCTGTGCCCTGcaatctccctctccttcaatgCCTTCAAGACAGTCCTGGAGATTGACACCATGGGTACATTTAACACCAGCAAGGTGGTCTATGAGAAGTGGTTCAAGGACCACGGGGGTGCCATTGTAAACATCTCTGCCACCCTCGGCTACAGGGGTCAGGCTCTCCAGGTGCATGCTGGCTCTGCCAAGGCTGCCAACGatGCCATGACCAAGCACCTGGCTGTTGAATGGGGACCAAGTGGGGTAAGGGTTAACACCCTGGCACCAGGTCCTATTTCTGGGACAGAGGGCTTCCATAGACTGGGTGGCAACAGAGCAGACAGCATGGGCGCCTTCTCATCCATTCCGCTGCAGCGGGCAGGCAACAAGACTGAGATGGCCCACAGCGTGCTGTTCCTGGCCAGCCGCGCCTCCTCCTATGTGACGGGCCACATCATGGTGGCTGACGGCGGGAGCTGGCTCACCTCAGCCAATGATGTTTCCATGCTGCTCGGCTATTGGTCAGCTGAACTGAAGAGAGACAAGTAGATGGTGAAGAAGAAGTGGCAGATTTTGAATAATCTGCTAAATATAAATCAATGGATTTGCCATGTATGATCTTTGAGACTGGAAAGCTACCATAGCTGATAGTGGTTAAGTGGACAATAGGAGTTAAACACAAATATTGACTGGAAATGATTGACCTAAAAAGACACATCACAGCCACATGTTGAAAACGGGATAGATTGGCCCAATCATGTTTCAAGCGTTGGATAATGAGTTAATCcacaccatttaaaaaaaatgtaattactaTATACAATAACTACTTTGGATTAAGAATCAATATGTTGATGAACGTGATTAGTAAAATCGCCTTCTGTAGTTGTTGAATCATGTAGGCTAGTTGTTGAAATTACATTGTAAAGCACTTACAATTTCCATACACAATGTCCAGAAATGTTCCTAATAAACCTTGACATAATGACATTTAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1544820 lncRNA upstream 12611 21287565 ~ 21288350 (+) False G1351318
TU1544814 lncRNA upstream 12673 21287565 ~ 21288288 (+) False G1351318
TU1544816 lncRNA upstream 12673 21287609 ~ 21288288 (+) False G1351318
TU1544817 lncRNA upstream 12703 21287609 ~ 21288258 (+) True G1351318
TU1544812 lncRNA upstream 17173 21283556 ~ 21283788 (+) True G1351316
TU1544912 lncRNA downstream 260149 21566268 ~ 21566447 (+) True G1351401
TU1544958 lncRNA downstream 268895 21575014 ~ 21575231 (+) True G1351443
TU1544966 lncRNA downstream 277881 21584000 ~ 21584319 (+) True G1351451
TU1544976 lncRNA downstream 290523 21596642 ~ 21597102 (+) True G1351460
TU1544977 lncRNA downstream 291792 21597911 ~ 21598110 (+) True G1351461
XM_036946485.1 mRNA upstream 968 21293530 ~ 21299993 (+) False LOC110491616
XM_021565187.2 mRNA upstream 968 21293534 ~ 21299993 (+) True LOC110491616
XM_021565185.2 mRNA upstream 220854 21050726 ~ 21080107 (+) True cluap1
XM_021565173.2 mRNA upstream 375410 20924087 ~ 20925551 (+) True LOC110491606
XR_005036477.1 mRNA upstream 412905 20885493 ~ 20888056 (+) True LOC118939519
XM_021565192.2 mRNA downstream 1633 21307752 ~ 21351756 (+) False rab11fip3
XM_021565193.2 mRNA downstream 1633 21307752 ~ 21351756 (+) False rab11fip3
XM_021565194.2 mRNA downstream 22940 21329059 ~ 21351756 (+) True rab11fip3
XM_021565195.2 mRNA downstream 68985 21375104 ~ 21430347 (+) True ift140
XM_021565196.2 mRNA downstream 125047 21431166 ~ 21443552 (+) True ccdc78
TU1544755 other upstream 79814 21220765 ~ 21221147 (+) True G1351274
TU1543613 other upstream 1262983 20030730 ~ 20037978 (+) True G1350275
TU1543395 other upstream 1562927 19737162 ~ 19738034 (+) True G1350066
TU1542335 other upstream 2159284 19139027 ~ 19141677 (+) True LOC110491534
TU1542100 other upstream 2540541 18752623 ~ 18760420 (+) False LOC110491516
TU1544874 other downstream 96108 21402227 ~ 21405117 (+) True G1351366
TU1545030 other downstream 373105 21679224 ~ 21680881 (+) True G1351501
TU1545079 other downstream 693238 21999357 ~ 22000251 (+) False LOC110491629
TU1546739 other downstream 1325760 22631879 ~ 22632305 (+) True G1353021
TU1547300 other downstream 1739150 23045269 ~ 23045884 (+) True G1353519

Expression Profile