RNA id: XM_021565194.2


Basic Information

Item Value
RNA id XM_021565194.2
length 5973
RNA type mRNA
GC content 0.46
exon number 11
gene id rab11fip3
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 21307752 ~ 21351756 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACATTGAAGTAGAAAACGTTAAAGGGAACATTGCTCCCTTTCTTTCATATGACATTTTGATCATCAAATTCCATGAGAGGGGTAGTTGGGGTGGTAATGGCAGTACGGGCTGTACCCTTGCCTTCGGACTCTTTcagtctccagactccacccctTTTGAGAACCCACTGGAGCTGAACTAGGtgttgggcattctatgttttacACTTTTGCTTTCTGAGATTGAAAAGAAGGAAGCGCTAGGAGGGGAAATTACTGGGGGGTTTCATTACAGGCCAGTCTTCCTGCCCGTGAGCCCCAGGCAGACAGCATGGTTTTGGGCATGGTGGACAGCCTTCTGGGCCCGGTTCCTCCTGGAACTCAACACAGACAGCAAAACGAGGTGACGGACAGTGCATACCTGGGCTCGGAGAGCACTTACAGCGAGTGTGAGACGTTTACCGACGAGGACACGGGAGCCCTGGTCCAGCCCGAGATGCACGAGGATGTGGAGACGGACAGCGGCATCGAGGCCACGCTCCACGACCCAGAGGACAGTAGCAACAGgttCTCCCTGAGCTCTGAGTTGCACAGCCACACCCTGGTGACAGTGATTGGCGGGGATGAGGAACATTTTGAGGACTTTGGGGAGAGCAACACCTCGGAGCTGCTGCTGGACACCACTGAGGAGGGAACCGAGGGAGAGGGGGACTCATCCCACCTCCAGACCCCCGACCAGAGCAACTGCTCCTCCCTGCTACTCTCTCCCAGcACCCCCACTACTCTCCCTGCCAGCTTTCAGAGCTTCCTCAGGGAGGAAGCGCTGGACTTTTTCTGTAACCAATGTCACAAACAAATCTCTCGCCTGGAGGACCTCTCCACTCGCCTCAATTTCCTAGAGATGAATAGcTCCAGCAAGAGGCTGTCCAGCAAGAAAGTAGCGCGACACCTCCTCCAGAACAGCTCCATGACGCTGGACAGCATGAGTGAGCTGTCCCGGGACATACTGGACCTGGCTGACACCGACATCACTGACAAGGTGCTCCTGCTGGAGCGTCGCGTGGCGGAGCTGGAGAAGGACTCGGAGGCTAGCGGGGAGCAGCACGCACGCCTCCGCCAGGAGAACCTGCAGCTGGTGCACCGGGCCAACGCCCTGGAGGAGCAGCTCAAGGAGCAAGAGCTCCGCGCTGAGGACCACCTGCACCAGGAGACCCGCCGCCACAAGGACGCTCTCACCAAGCTGGAGCGGGAGAGGGGCCTGGAGCTGGAGAACCTGCAGGCTAGGCTGCAGCAGCTGgatgaggagaacagtgagctgAAATCCTGTGTGCCCTGTTACCGCGCCAACATCGAGAGACTAGAGGAGGAGAAGAGGAAGCTGGAAGATGAGGTGGAGGACGTGACGGAGCGGATGAACGAGGAGCTGGAAACCCGGAGGAAGACGACCGACAAGCTGACCCACGAGCGCCACCAGAACCAGAAGGAAAAGGAGCACACgcaggagctgattgaggacctgcGGAAGCAGTTGGAGCACCTGCAGTTGTACAAGCTGGAGGCAGAGGCTAGGAGAGGACGCTCTCCCAGTGCCGGGCTGCAGGAGTACCAGAGCCGCACCCGCGAGGCCGAGTTGGAGCAGGAGATCCGACGCCTCAAGCAAGACAACCGCAGTCTGAAGGAGCAGAACGATGAGCTGAACGGCCAGATCATCAACCTGAGCATCCAGGGAGCCAAGAACCTGGTGACGGCCTCCTTCTCCGAGTCACTGGCTGCCGAGATCAACTCTGTGTCCCGGGGAGAGttgaTGGAGGCCATCCGCAAGCAGGAGGACGTCAACTTCCGACTACAGGACTACATCGACCGCATCATCGTGGCCATCATGGAGTCCAACCCCTCCATGCTGGAAGTCAAGTAGAGGTGGCCGTCTTGAAGTAGGGCAGCCTGGCGGCCTCTCCGCCTCGCTGGACTGCCATACTAGGAGAGACTGGCTAAACACTTAAAGACTGGCTACTGAGACTGACCACAGAGAGAGCAATACCTATTGAACTATACTAGGTGGGGGAAAAGTACTCCAATTATCATTAAAGAAGATGTATTTTTTTGTCACTGTTGGTGGCTGTTGTCTATGAGAAAATAAGCTACATGGTTTAACGTCCCTGGGATTTGAGctttgctttgtgtgtgtgtctgttcccccTGTATACAGTAGGCTTTGGTTCTAATGACTTCCCTGCATTTGGGTAGAGGGACCTGAGTTTTCCTTGTGTGTCTGAGGTTGTGTGTGCAAATGTGTTTTCTCTGAGGAACTCTTGGAATCCATGGAAGACCTGGTTAACGGGTCACTGTCCCCTTAAATATCTTCTTGGCAATGAAATCTTGTGAGCCCCAATGCTAGCATGATTCTAAAATGTTTTGTCCTTGCACTACATATCAGCCGATACCATCTTTCACCATGAGCTCAGTAAATGAACTCCTGGGGTGTTTTGGGAGCGTTCTCCTGTATCGGACTGAACCATGTTTAATCCACGTTTAAACCGGATGTAGCACTGGTCAGGGGACGAGGTCAGATGAAGTTGACCCTGGCTGCTCTCTTGAACACAGACTACATAAACCGTGTCACGTTTGCAGTGTAAGTCTTTATCCTGGTTTGACTTTTGACTTGGATTATATTCCCAGTGTGAGTTAACCCAACCCAGGTGAGGGACATTTCCTGGGGTAGAGGACAAGAAATGCCCtgagggttagtgtgtgtgtgtgtgtgagtgcatgcatgcatttgtgtatgtgtgtgttacgttttttttgttgtgttgcTTGCAATACTTTGTTTTGAAAAAAGGTTAAAAAGGTTTGGTGACTACAATGGTAGTAACACGAATGACATGTTCATTCTTGTGAGCCTCAATGTCTCCACAGTGAAGCTGAGTGGCTCATTGTTTGCTGTACCTCCGTTTGTTTTTACAATGAAACAGAGTCCTAGGGGGTCAGGCGGGCTAAATACTCCAATACAAGAACACTTCTCCATCACATCAATTCCTTTTAATGTAAGCTCTGACTTTGAGGTAGTTAAAAACGGACAAATACTGACATAAATGTTGGTCATACTGACAGGAAATAATTGGATTGTCTAACTTGGACACTAAATCAaatggagagaaaatgttgctgtgtTGTTTTTATTTGAGCTGAGTGCGCTGGGAAGTGTTGTTCTTTTATAGTGTGACTGACCCACCTGATCCTTAGTGGAGCCTTGCTGAGTGAAAGTGAAAGGGAGCCAGTTTATCCAGTGTGAAGGACATGTCTGGTCTGCTTGTAACCAAAAACATTTACTGGATAAGTGACTTTCCGTAAAGAAAGAAAATGCTGAATAATTTGACTAATGAATAATGTCTTATTGAAGGAATAGAATCagttcattttttgggggggtttagacaaaaaagtattatttgtataaaaaaatatataaaaaaatgtaaagtttATTGTGAAGGGATGTAATCCTAATATGACGATATATTGTTTTAAAACAATATGAATGAATTAAGAATGCTGAATTGATTTGAAAACTGACCTTTTTTGAAGAGGTTACATGTCGTTACTCTCCCGCAGCTTTTTGATTTAAAGGAGCAGAACATGTTCAACACTTAGATGAAGCAATAATGTTTTGAAGAACAGTGGAGAACGAAGAAGAACAGACTTCGTGGACAAACGGACTTCAGCAAACCAACAAAACTCCCTTCTTTTACTGTATGAGCCTCAGTTGACTAAGCACCAATCTGAATTTCCGGGAACTTTTCGCCACATTTCTGGACGTAAGCAAGAGGAAATGAGAATGGCAGACTTTTAATACACGTCATCAGTGCTACCTATTCACTAATGCACTCCCTGAGACTGAGATACTGGACATATTGAAGGATATCACTGTTGCTGACTCTTACTTGCTGGAACTGCTGACAGCTTGTGGTTTGTCCCTGGGTGAAAGGGATGAACAGCAACGTATACTGTACCAACCATCGCAGCTATACTAAAAACAAAAATACCGCAGCCACCTCCACCACCTATCAAACTCTTGCTACAGTATGCCACCACGCTTTTCTCCTCTTCAGCGCTCCATGGAAAATGGCCTTGTGTGTAAACGACTTGTACATGTCATTTTTTCCCCAAACCTTTAGATTCTAGGTATTTTtatagttgggggggggggggggggaattgcaTTTTTCATCATTTTCTTTTTGGTCTTCTGCTGAAAAATAATATGATCCTCCCCCAAGGGAGGGTCTTGTGTATGCCGCTCTCGCATGTAGCCCGTACACGTCAATTTCTCCCGTCTGTGAATCACATCCAGATATTTATTCTGCATTTCACTTCACAGTCCCTgccctgttgtttctctctaatAGTAGTTGTTTTTGAGGGAAAAGTTTGTAAATAGTTTTGGAATCTATGGATTCTCAAGGGAAACTGGCATTCAGCGGATTTAATGGTTGAATGCTACTCGAGGGGAAATTGTTGATTTTGAGAAAAATAGTTGATTATTTTAGATTGAAATGTATATCTTGTACTCAATGTAGCATacagtacatttcaaaagtgttgCATTGAGCACCCATTGAATTGGCAACACTGGCGTGCTTCAGTCTCGTCTGACCAATTAAAAATGTCTGTTTATGGTTAGGTCTTTCCACTTCAACCCAACTGAGGTGTGATCCACTGTAATGCTGAGGTTGCAGACAGTGGCCTCATGAAGGGCATTGTCATTGTAGTCAACGTCAGTGACACATGCCAACTCTGTTATTGCCCCAGCTGAGAACAGGCACTGCACAGAACTACTGATCACTATTGTATATCACTTTCTGAATCTTTAAAACCGATCATTAGGTTCACCGAACCATATCATGTGGAGGTCAGTGGAGTTGCACTGCGCCTGATGCCTCGGGACAGATAGTGAGGCCTCAGAAAGCCAGCCCACAGAGGGCTGAACTGTCTGAGTGGTTCAAGTCATTCTGCCTTTGAGTGTAATAGGTTGCTTTCCCCAGCAGATATGAGGCTCAAGAGGATTCAGCCAATCATTTACTACTACAGTACCCAGCAGCCAGTGGTGCAATCCTAGGAGGAAACCATAAGACATATCTTCCCCTATCTTACATGGAGACAGCAGCAGGATTACCCTATTTTCTGTTTATTCCttgtttatttttcatttcaGACTGTCTACTGTAGTTTAGACAGCTAGTTGTGAGACTTACACTAGCATGATTGCTAGCTGACTGATTAGACTAAGACCAGAGTCCTGTCCAGACATTACACTTGATTGAATGGGATTCTCTAATGCACTTTAAACACGTTCCAATTTATTTTTAACCACATAATTTTAAAACTGACCAAAGAACAGAAGTTTTACTTCTCACTGACCATTTTAACTATCGGTTCACACTCTCTTCCTTACTGAAATTTGAAAACGTTATCATCAGAAGAGTAATTCATTATCATTGCTGAGTCCAACTCTGCCCTGAAAAACTGGCCTGCTAGTCTTAACACTGTGCCTCTCTCTCATAATTGTCCCTCTTACTAACCTGATGACGAGCCCTTGGAAAGCACTGACCGTATGTGACTGTCAGTTTGTTAAATTATACTTAAATGTGTATATAAAATggtttgtgattttttttttgctCTCACACTAGCTTCCAATGTCCAAAGAAAGTTTTGCTCAAGGCACAAACATCACTACTATAGTAGTGCATGGCTTGCCATTTAAAATGAATGGGAAGGGAAAAAGAGAACATTGTAGAAACAAGAATTGTACAACTGAAGTTTATTCTTATTCTGAAGGATAATGTATTGTTTACTGCTCTATGTTTTTCTTTGAAGGTCATCTGAATGATGTAACCCTTGTTGTTCTTGGGGAATGATAATTTCAAGTCAATGTAAAAAGGTAAAAGAAAACAATGAAGTAAGAttagaaaataaatcaaataataaaATGA

Function

GO: NA

KEGG:

id description
K12485 RAB11FIP3_4; Rab11 family-interacting protein 3/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1544820 lncRNA upstream 40709 21287565 ~ 21288350 (+) False G1351318
TU1544814 lncRNA upstream 40771 21287565 ~ 21288288 (+) False G1351318
TU1544816 lncRNA upstream 40771 21287609 ~ 21288288 (+) False G1351318
TU1544817 lncRNA upstream 40801 21287609 ~ 21288258 (+) True G1351318
TU1544812 lncRNA upstream 45271 21283556 ~ 21283788 (+) True G1351316
TU1544912 lncRNA downstream 214512 21566268 ~ 21566447 (+) True G1351401
TU1544958 lncRNA downstream 223258 21575014 ~ 21575231 (+) True G1351443
TU1544966 lncRNA downstream 232244 21584000 ~ 21584319 (+) True G1351451
TU1544976 lncRNA downstream 244886 21596642 ~ 21597102 (+) True G1351460
TU1544977 lncRNA downstream 246155 21597911 ~ 21598110 (+) True G1351461
XM_021565188.2 mRNA upstream 22940 21300961 ~ 21306119 (+) False decr2
XM_021565195.2 mRNA downstream 23348 21375104 ~ 21430347 (+) True ift140
XM_021565196.2 mRNA downstream 79410 21431166 ~ 21443552 (+) True ccdc78
XM_021567357.2 mRNA downstream 256141 21607897 ~ 21608814 (+) True LOC110492885
XM_021567326.2 mRNA downstream 258037 21609793 ~ 21610638 (+) True LOC110492851
XM_036946495.1 mRNA downstream 375861 21727617 ~ 22001169 (+) False LOC110491629
TU1544755 other upstream 107912 21220765 ~ 21221147 (+) True G1351274
TU1543613 other upstream 1291081 20030730 ~ 20037978 (+) True G1350275
TU1543395 other upstream 1591025 19737162 ~ 19738034 (+) True G1350066
TU1542335 other upstream 2187382 19139027 ~ 19141677 (+) True LOC110491534
TU1542100 other upstream 2568639 18752623 ~ 18760420 (+) False LOC110491516
TU1544874 other downstream 50471 21402227 ~ 21405117 (+) True G1351366
TU1545030 other downstream 327468 21679224 ~ 21680881 (+) True G1351501
TU1545079 other downstream 647601 21999357 ~ 22000251 (+) False LOC110491629
TU1546739 other downstream 1280123 22631879 ~ 22632305 (+) True G1353021
TU1547300 other downstream 1693513 23045269 ~ 23045884 (+) True G1353519

Expression Profile