RNA id: XM_021565224.2


Basic Information

Item Value
RNA id XM_021565224.2
length 2691
RNA type mRNA
GC content 0.48
exon number 13
gene id mfsd1l
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 22357584 ~ 22366265 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACGAGGAACTGTGTCAGTAAGGAAGTGACGACGGCGCACGAGGGCAGTGGAAGTTCTTGCCATTACACCTCGAGCCCTTGCGCGCGTTCAGCGACTTGTAAAGCATCAGTGTATTCGAAAAGTGTCTCATAATCTATCCATATACTTTAAAGTGTGCGCAATCTGCGTAGTTGCAACTTGGAATACGGCGATTTATTGAATAACCGTTCGGTTCTTCCGACCGACATAAACAGAAAACAAATGGGTATTTACGTTTAGGCTACTTTAGTTTTGTGGACCTCGTTTTAGCTTATTATGGCGCAGCCGGCAGAGAAAGCATACTACCGCTTTCTGGTATTGTTCTTCAACTGTCTGCTCACGTTTGGCTCCTACTTCTGCTTCGACATCCCTAGTGTCCTCCAGGACCAGTTCCAAGGGAATTTGACGTGTGCCAATACAACCGTGATCAATGGGACAGTGGACTGTGTGGAGGGACTGGGGATGACCCCTCAGGAGTATAATCTGCTCTATGCCATCTATGCCTGGACTAATGCAGTGGTGGTTATAATGGCTGGGTTCCTTATTGACAAACTAGGCAACCGCTttggtgtgttcctcttctccttcctgtgtgtgctGGGGTCAGCCATCTTTGCTCTGGGTTCTCACTTCAAAGGAACAGCCTACCTGCTCCCTCTCATGCTCACCGGCCGTTTGCTGTTTGGCTCTGGCAATGGATCCCTCACCATTGTCCAGAACCGGATTACAGCGTTCTGGTTCCGGGGGAAGGAGCTGGCCCTGGCGTTTGGCCTGACCCTGGCCTTCTCCCGCCTGGGCTCCGTCCTCAACTTCTTCCTCACCCAGCGGTTCCAGGCCCAGTACGGCATGCAGTGGACCCTATGGGGAGgtgCCTTCCTGTGTGTGCTGGGCTTCATGTCTGCCATCACGGTCAGTGCCCTGGACAAGGTGGGCATGAAGCAGCTGGGACTGGATGGGGCCATTCAGGAAGAGTCACGCAAAGTGaggttTCAGGATGTGAAGCTGCTCTCTCTCAGATACTGGCTGTTGGTTCTCACCATCATGTTCTTCTACAACGGCATCTTTCCCTTCATAGCTGACGCCAGTAAGTTCATACAAGACAAGTACAGTGACTACAGCCAGAAAGAGGCAGCCTACATCGCTGGTGCCGTATATGACAGCTCCCTTGTCCTCTCTGCCACTGTCGGAATTCTCATCGACAATGTGGGTTTGCGTGGGGTCTTTGCCGTGTCCTGTGCTGTCCTCACGCTTCCTGTCTTTGGCCTCCTGGCCTTCACTTTTGTCCCCCCTCTGGTATCCACCATCTGGCTGGGGGTCACCTACTCCTTCGCTGCTGCAAGCATGTGGCCCTCTATTCCCCTGGTGGTCCCTCAGGCAACTCTGGGGACAGCTATGGGCCTTGCCACCTCAGTACAGATGGTAGGAATTGGCATATCCAACCTTGTCGTTGGCCAGATCTTGGGAACCAAGTCAAGTGACGCTAAGATCCCACTGTGGCGCTGGCAGCAGATGATGATCTTCATGTTGGCCAACACCATCGCCTGCATCGTCACCTCTGTGGTGCTCAACATCGTGGACCACCGCCAGGGTGGGATTCTGAATAAGACGACCAAGAGATCTGGCTCCCCGCCCCCCAGCGGACCTTCAGACAGAGAACCTCtcgtggagggagaggaggggcagaATGACGAAGGGGCTGTTCGCTCTCCCTCCAACAGTTCCTAATCACCTCACTCTTCTCTTAGAAGAGTCTGCCTCAGATAGTTGAACTGAAATGTGTACACAATCGGCTTGAATTGTtttctctatctatatctcttgAGCCTTTTGGGGAAGGAGAGGGATTTTTTTTACAGGATTTGTCAAGGGAAAAAACTTCAGGACTCTGCCTATAATCTGAAAATGGAGGTGGTCGGATCCCCTCCCCTCATGGTTCACTAATCTTGTAGATTATACTCACTTATCAGACAGACACTAAATATTGCCTTTTTAAATCATGGTCTGTGTCAATGGAGCCTTTGCCCAAGTACAAGGCTCATGTTATTGAGTGCTACGGCAACAAACAGTGAACAGTATTGAAGTCAGCAAAATCATGTCTTCACACTAAAACAATCGGAAGCTAACTAATGCATGTTTTTGGTTTTGGTCCTTATTTCAGTGATCCAAAAGTTCTCCTTCTTTTATAAGGTTAAACATGTACGTTGGTTACTAATTTAACCACTATTAATAAGGAGTCAACAATAACCTGTTGCATAACTGTTTAATATAATTCTTTCAGTGATATTTCTGCACATGTTTCTGTGACGCCAATAATGACATCTTTAATTTCAGATAGCAACAACAATCGCTTCAGATTACATGAGCTCtctttttaatttttaaaatgttttatgtgGTTGTGACGTTTGGTGTTAGCAGTGGTCCAAAATGCTCAAGTTGATGTAACATGCAGCAATTTGTTCTGGCAATTACTGCCTTTCCAATCAAACACACCATTGCTTTTACTACAGGTTTCAGTCAATAGAGACTATGCATGCAGCGGTTCAAGGTCCGCCAGTGTGAACCTTCTATAAGGGAATGGGACCGATTTTTGCTTTATACTGACAAGCTAGCACAAATAAAAAGGTGTTGCTACAGTAACGACTGGTGTTGTTGTCATAGCTGTATTTTCA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1546493 lncRNA upstream 66420 22291443 ~ 22293474 (+) True G1352858
TU1546456 lncRNA upstream 139663 22218472 ~ 22220231 (+) True G1352821
TU1546448 lncRNA upstream 150034 22209648 ~ 22209860 (+) True G1352815
TU1546443 lncRNA upstream 165034 22194315 ~ 22194860 (+) True G1352810
TU1546440 lncRNA upstream 176125 22183431 ~ 22183769 (+) True G1352807
TU1546567 lncRNA downstream 83458 22449723 ~ 22493464 (+) True G1352922
TU1546592 lncRNA downstream 151800 22518065 ~ 22518609 (+) True G1352942
TU1546690 lncRNA downstream 213059 22579324 ~ 22581218 (+) True LOC110492853
TU1546697 lncRNA downstream 217204 22583469 ~ 22583919 (+) True G1352982
TU1546706 lncRNA downstream 227048 22593313 ~ 22593584 (+) True G1352991
XM_021565227.2 mRNA upstream 6063 22342314 ~ 22353831 (+) True spsb3b
NM_001160640.2 mRNA upstream 30745 22317369 ~ 22329149 (+) True atp6v0cb
XM_036946500.1 mRNA upstream 215610 22085330 ~ 22144284 (+) False ntn2
XM_021565231.2 mRNA downstream 2622 22368887 ~ 22475310 (+) False si:ch73-103b11.2
XM_021565232.2 mRNA downstream 2622 22368887 ~ 22475310 (+) False si:ch73-103b11.2
XM_021565233.2 mRNA downstream 2622 22368887 ~ 22475310 (+) False si:ch73-103b11.2
XM_021565234.2 mRNA downstream 2623 22368888 ~ 22475310 (+) False si:ch73-103b11.2
XM_021565235.2 mRNA downstream 80738 22447003 ~ 22475310 (+) True si:ch73-103b11.2
TU1545079 other upstream 359643 21999357 ~ 22000251 (+) False LOC110491629
TU1545030 other upstream 679013 21679224 ~ 21680881 (+) True G1351501
TU1544874 other upstream 954777 21402227 ~ 21405117 (+) True G1351366
TU1544755 other upstream 1138747 21220765 ~ 21221147 (+) True G1351274
TU1543613 other upstream 2321916 20030730 ~ 20037978 (+) True G1350275
TU1546739 other downstream 265614 22631879 ~ 22632305 (+) True G1353021
TU1547300 other downstream 679004 23045269 ~ 23045884 (+) True G1353519
TU1547339 other downstream 757594 23123859 ~ 23126311 (+) False LOC110491658
TU1547458 other downstream 932192 23298457 ~ 23298753 (+) True G1353660
TU1547936 other downstream 1113824 23480089 ~ 23488612 (+) True LOC110491671

Expression Profile