RNA id: XM_021565237.2


Basic Information

Item Value
RNA id XM_021565237.2
length 2977
RNA type mRNA
GC content 0.53
exon number 19
gene id LOC110491641
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 22478166 ~ 22495374 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTTTGGGAAGATTATTGAGTGAGCGCAAACAGGATATTGCTGTCATCTGTCAACAAAGCAGAAACTTATCTTTAGATGTTTTAGTCTATTCAAATCAACTCTGGAGGAGGCAATTATTTTGCTCGAACTCTATTTAGTTATTATGGTCATTTCATGCTCATGGGCTGTATATTTTCTGTTCGTTTCTAAACCTGTAATTGGGCAAACTTAAGATTGTTTCAAATTAAGAGAAGCAGCTAGCTAGCCTTTCTAGCCAGTCTATGTTCATGTCACATTCAGAAGTGAAATGAATTGTGGGTTTTCTTGACATCATTCATCGCTAGCTACCTGAAGTTTGTCGCACGGCGAAATGGACTTTTCCAAATTTCTGGACGATGATTTCGACGTGAAGGACTGGGTGAATGGGGCCTTCAAGATGCAGAAGGATGTGCCTGGGAAGGCAGATGCACACGCGGCAACGCTGGTCATGAAACTGCAGTTGTTCATCCAGGAAGTCAACAATGCAATAGAGGAGAGCAGTAACCAGGCCCTGCAGAACATGCCCCGAGTGCTGCGGGACGTGGAGGCCCTGAAGCAGGAAGCGTCATTCCTGAAGGAGCAGATGGTCCTTGTCAAAGAGGACATCAGGAAATTTGAGCAGGACACTGTTCAGTCCATGCAGGTCTTGGTGGAGCTCGATCAGGTCAAGTCTCGGATGCACCTAGCCTCCGATGCACTACAGGAGGCAGACAAATGGAGCACGCTCAGTGCAGACATCGAGGAGACCTTCAAGACACAGGACATGGCTGTAATCTCTTCTAAACTGACCGCCATGCAGAACAGCCTGGCTATGCTGGTGGACACACCAGACTACTCTGAGAAATGTGTGCACCTGGAGGCTCTGAAGAACAGGCTGGAGGCCTTGGCCAGCCCCCAGATAGTAGCCACCTTCAACTCCATGTCTGTAGACCAAGCCAAGCTCTTTGTGAAAGTCTTCACAGAGATCGACCGAATGCCACAGCTTCTTGCCTACTACTACAAGTGTCATAAGggtCAGCTGGTGAGTGTGTGGCAGGACCTGTCTCAGAGTGAGCTGAGTCTAAATCAGCAGCTGGCTGAGTTCTACGACACCTTGCTCTCCACCTGGCACTCCCAGCTACAGTGGAGCAGccagGTGTTTAAGAACCCATACGAGGTGGTGACAGTGCTGCTGATCCAGACCCTGGGGGCCATGGTGCCCTCCATCCCTGTGTGTCTGAGCACGGCCATGGAGCGCGCCCCCCAGGAGCAGCGGCTGGACACCCTGCTGGAGCTCCACCACACCGCTGCCACCTTCGGCAGGAGCCTGGCGCAGGCCATGTTGCCTCACCTGGGCGAGAACAACCTGCTGAAGGTGAATGAGCTGGTCAGTGCCCTGTACGACCCCTACAAACCCTACCAGCTGCAGTATGGAGACCTGGAGGAGTCCCACCTCCTCATTCAGATCAGCGCCGTGCCCCTGGAGCGTGGTGAGGTGATAGACTGTGTAGAGGAGCTGAGTCACTCAGTGGGGAAGCTGTTTGGCCTGGCCGGTGCTGCTGTTGACCGCTGTGTCAAACTGACTGACGGCCTGGCCTTGTGTGGCCTCCTCAAGGCCCTCAAAGCCCTCTTCGCTAAGTATGTGTCAGACTTCTCCACTACTCTGCAGTCAGTCAGGAAGAAGTGCAGGTTGGAGGACATGCCCAGTGCTGCGGTGTTCCAAGAGGATTGGACTGCCTTCCAGAACTCGGTCAGGATCATTGCCACCTGTGGGGAGTTGCTGAGACAGTGTGGAGCCTATGAGCTGCAGCTGTCAAACAAGATCCTTGCCACGGCGGGGAAGTACCTGTCTGAGTCGTACAGCCCTAGGAGCCTGGCGGGCATCCAGGAAGCCAGCTCCACAGAGAGGAAGGCAAGCGGCAGGAACCCCTGGCAGGAGTATAACTACCTGCAGAGGGGCAACATGTCAGAGTACAACAGCCTGATGGGGCTGCTCTACTCCCTCAAGGAGAAGGGGACAGGTAACTCCAGTCTTCTGGCTGAGCCCCGAGTGGCTCTGACCCGTCTCAACCAGCAGGCCAACCAGCTGGCCTTCGACTCGGTCTTCCTGCAGATCAAACATCAACTCTGCTTGGTCTCCAAAatggagAGCCGAGACGCAGGAGGTTTTGGAGAGAGCTATGCTGAAGACCTGCCTACCTTCAGCTTGTCCCCACAGGAGTACATCACCAATATAGGACAGTACATCATGTCTCTGCCGCTCCACTTGGAGCCCTTTGTGACGCAAGAAGACCCGGCGCTGGAGTTGGCCCTGCACGCAGGAAAACTGCCTTTCCCTCCTGAGCAAGGTGATGACCTTCCGGAGCTGGACAACACAGCAGACTACTGGCTGGGCTCCATCGCCAGGGCGACCATGCAAACGTACTGTGACGCCATCCTGCTCATCCCAGAGCTCACGGCCCACTCCACCAAACAGCTGGCCACCGACATCGACTATCTGAGCAACGTTATGGACGCTTTGGGCCTGCAGCCCTCCAGGACACTTCAGCAGATAGTGACCCTGCTGAGGGCCAAGCCAGAGGAGTACAGACAGACGGCCAAACTGCTGCCCCGCAGACTGGTGTCCACCATCGCTGCCCTGAGAGGGCTGGACCACTGACCACGGTCACACTCTAAACCGATTTGATCACTACAATCTGGAGTCTGGGCCCCTGGTATGACGGAGAACTGAGAAGTATCCATTTGGGGATATTCCCATCATGCAACATCTTCAAATCAAACATTGTAACTGCTTTGGCATCATACTATTGGCAATTCTgttagtgtaaaaaaaaaaaaaatggttttctATTATGTTACATGTTTGTTCATTTACACTTATATTGGGGTAAATCCAGGTAGAATTGGTTTTGCTTATTTGTAATGTACTGGAATCTATCCACTAATTTAATAAACATGTGGCCTTGTTGTCTTCAAGTC

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0017119 Golgi transport complex cellular_component

KEGG:

id description
K20294 COG7; conserved oligomeric Golgi complex subunit 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1546493 lncRNA upstream 184692 22291443 ~ 22293474 (+) True G1352858
TU1546456 lncRNA upstream 257935 22218472 ~ 22220231 (+) True G1352821
TU1546448 lncRNA upstream 268306 22209648 ~ 22209860 (+) True G1352815
TU1546443 lncRNA upstream 283306 22194315 ~ 22194860 (+) True G1352810
TU1546440 lncRNA upstream 294397 22183431 ~ 22183769 (+) True G1352807
TU1546592 lncRNA downstream 22691 22518065 ~ 22518609 (+) True G1352942
TU1546690 lncRNA downstream 83950 22579324 ~ 22581218 (+) True LOC110492853
TU1546697 lncRNA downstream 88095 22583469 ~ 22583919 (+) True G1352982
TU1546706 lncRNA downstream 97939 22593313 ~ 22593584 (+) True G1352991
TU1546715 lncRNA downstream 112300 22607674 ~ 22608992 (+) True G1352999
XM_021565231.2 mRNA upstream 2856 22368887 ~ 22475310 (+) False si:ch73-103b11.2
XM_021565232.2 mRNA upstream 2856 22368887 ~ 22475310 (+) False si:ch73-103b11.2
XM_021565233.2 mRNA upstream 2856 22368887 ~ 22475310 (+) False si:ch73-103b11.2
XM_021565234.2 mRNA upstream 2856 22368888 ~ 22475310 (+) False si:ch73-103b11.2
XM_021565235.2 mRNA upstream 2856 22447003 ~ 22475310 (+) True si:ch73-103b11.2
XM_021565236.2 mRNA downstream 690 22496064 ~ 22523038 (+) True LOC110491640
XM_036946505.1 mRNA downstream 80655 22576029 ~ 22581228 (+) False LOC110492853
XM_036946506.1 mRNA downstream 80655 22576029 ~ 22581228 (+) False LOC110492853
XM_036946507.1 mRNA downstream 80655 22576029 ~ 22581228 (+) False LOC110492853
XM_036946508.1 mRNA downstream 80655 22576029 ~ 22581228 (+) False LOC110492853
TU1545079 other upstream 477915 21999357 ~ 22000251 (+) False LOC110491629
TU1545030 other upstream 797285 21679224 ~ 21680881 (+) True G1351501
TU1544874 other upstream 1073049 21402227 ~ 21405117 (+) True G1351366
TU1544755 other upstream 1257019 21220765 ~ 21221147 (+) True G1351274
TU1543613 other upstream 2440188 20030730 ~ 20037978 (+) True G1350275
TU1546739 other downstream 136505 22631879 ~ 22632305 (+) True G1353021
TU1547300 other downstream 549895 23045269 ~ 23045884 (+) True G1353519
TU1547339 other downstream 628485 23123859 ~ 23126311 (+) False LOC110491658
TU1547458 other downstream 803083 23298457 ~ 23298753 (+) True G1353660
TU1547936 other downstream 984715 23480089 ~ 23488612 (+) True LOC110491671

Expression Profile