RNA id: XM_036946533.1


Basic Information

Item Value
RNA id XM_036946533.1
length 5652
RNA type mRNA
GC content 0.51
exon number 30
gene id LOC110491647
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 22828198 ~ 22876076 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACACTTCGTTTATCTTAATTTCTTTCAGCTATTGCTCCCGGTGCTGTGAAGACCCAACCAGTGGACCGAGTCGGAAGGTGGGCCTTCCTCTCCTGCGGCCCCTCCCCTTCCTCACCTTCAGCCAATCCTAGATTCAAACCACAGCCCAGTTTCCCATAGATACTTTCTTACTGCTTTGGTCCTTCAAGATCACATAGTTCCATCATGGTAAACAAAACTCAGATTGTTGCATAGTAAGAAAAAGCTGTGAGAGAGAAAAATCCACTAGGCCTATTTGTTGGTGTTGTTTTGGAGAAAATAAGTAAGGCAATAGATAAAATTAGAGAGAGTGAAGAGGAAGCGTTGAACACGACTGGTTGAAAGCTATTTTTGACGAAGAAAAAAAGCAACGATTTCTCTTtttaacactgtcatctcagtgATGAGATAACAGGCTCAAACAGAAGCTCGCATGCAAGTGAGGTAACAGATTGACATTCTGTCCACAAATCACACGTACACGCACTTTGACCTACGGAACCCCTGCACACAGGGCTTTTGCGTAAACAAGCACTCCTAACATAGACGTTTTCTCCTGGAGCCCACCACACTCTCTCCAGTCTCATGATGATGTGTGAGGTGATGCCCACCATTTCGGAGGACGGGCGAGGAGGAGGCCCCTCCTCtcctggggttggggctgggatTGGAGGCCCTGGTGGGGCCATGGGGGGAGGGGGCTACGGTGGCCGAGGGGAATCCAGGGGCGGGGGTGACGAGGGAGGCAGCACAGGGAACCTGGAATCCCTGATGGTCAACATGCTGACcgagagggagaggctgttggAGAGCCTGAGGGAGACCCAAGACAGCCTTGGGACGGCCCAGCTACGCCTCAGAGAGCTGGGCCACGAGAAGGACTCCCTCTCGAGACAGCTGTCCATCGCCCTGCcacagGAGTTTGCTGTGCTGACTAAGGAGCTGAATGTTTGCCGGGAGCAGCTactggagagggaagaggagattGCTGAGCTCAAGGCGGAGAGAAACAACACACGTTTGCTACTAGAGCACCTGGAGTGTCTTGTGTCTCGTCACGAGCGCAGTCTGAGGATGACGGTGGTGAAGAGGCAGGCCCAGTCCCCGGCGGGGGTCTCCAGTGAAGTGGAGGTCCTCAAGGCCCTCAAGTCCCTGTTTGAGCACCACAAGGCTTTGGATGAGAAGGTTCGAGAGCGACTCCGTGTGGCCCTTGAGAGAGTGACCCTTTTGGAGGATCAACTACAAGCGTCTGCTCAAGAGGTGATCTCTTTAAGAGACCAAATTAAAAGACGACAACAAGGGTTGGACGGCGGGAAAGACCGCCTACCCAATGGACCCTCCTCTGGATTGGACGACGGTGAGatcgacagacagagagaaacggaGATAGAGCGGCAGAGAGCCGAGCTCTCCCAGCTGAAAGAAAGATTGGCCCTTATGTGTCGACAGGTTGGGGAAATAGAGGAACAGCTTGCAGCCGCCAGGAGGGAAGTGACGAAGTCGGAGGAGGCCAATCAGAAGCTCCAGAGGGATGTGAAGGAGGCTCTGTGCCAAAGGGAGgatatggaggagaggatcacTACATTAGAGCGCAGGTACCTCAGTGCTCAGAGGGAAGCAACCTCTCTACATGACGTCAAAGACAAGCTGGAGAATGAGCTGGCCAGCAAGGAGTCACTGCACAGACAGAGTGAGGAGAAGAACAGGCAGCTCCAGGAGCGTCTGGATGACGCCAAGCAGAAGCTCCAGCAGACCCTGCAGAGGGCCGAGACACTGCCCGAGATCGAGGCCCAGCTCGCCCAGAGAGTGGCTGCCCTCAACAAGGCCGAGGAGCGCCATGGGAACTTTGAGGAGCGACTACGACAGATGGAGGCACAACTTGAAGAGAAAAATCAGGCGTTGCAGAGGgcaaggcagagagagaaaatgaacgACGAACACAACAAACGCCTCTCGGACACGGTGGACAAGCTACTGTCCGAGTCCAACGAAAGACTGCAGCTTCACCTCAAAGAGAGAATGGCTGCCCTCGAGGAGAAGAATTCCCTGTCAGAGGAGCTCGCAAACATGAAGAAAATCCAAGATGATCTGCTAGCGAACAAGgaCCAGCTCATAGCTGAGCTGGAGAGGATTCAGCTGGAGCTGGATCAACTGAGGGGCAGGCCTGGCTCTTCCTATTCCAGGTTAGCCACAATGGAGCTTCAAGGATCTCTTCCAGGGAGTGCCTCAGAGCTCCGTTACCCCCAGGGTGGTGGCTCCCTCCCAGCCGGCTATGGCAGCTCCTCCAGTGGCGTGGTGGTCCGGAGGGCACACCGCGGCCGATGGGCTCCCCCCAGGGATGACAGCAACAAGTATGGAGAGTGGGACAGTGGCAACATGCTAGGTCCCGGGTTCGAGGGGGGAGTCGAGGGGGGCTGCTCAGATGATGAGGACGACAGGGAGACCCTGTTTGGCTCGGAGCTGCTCTCGCCCAGTGGACAGACGGACGTGCAGACCCTTGCCATCATGCTGCAGGAGCAACTGGAGGCCATCAACAAGGAGATCAAGCTGAtccaggaggagaaggagagcacTGAGCTGAGGGCGGAGGAGATCGAGAGCCGGGTGAGCAGCGTGGCCCtggactcctctcctctccccccctcctcactGGGTGGGGGCAGGGACAGCGTGGGGAGGGGCTACATGaccccctccctcacctcctccaccctGGCCTCCCCTTCACCCCCCAGCTCTGGACATTCCACCCCCCAACTGCCACATTCCCCTGCcagagaatcagacagacagAACAGCAAAGAGGGCGACGATTGCCGGGCGCTAGCCTTGATTGACTCCACCCCTCCTCCGGTTCCTCGTGCTCTGCGATTGGATAGAATGACTCACACACACCCAGGGGCTGGGCTGGATGATCACCGCGAATTCCGCAGTAGTCAGGACTCTCTCCACAAAGCCAGCAAGAAGAAGAGCATCAAGTCCTCCATTGGACGCCTGTTTGGGaagaaggagaaggggaggatcGGAGGACCTGGGAGTCAGTCTGCCTCTCTGGCCTCCACACCTTCTGATGACCTGGGCTCAGCTGACCCCCTGGGCCTGGCCAAGATGGGAACTGGCACCGTGGAGAAAGATCGCCGCAGCAAGAAGAAGCACGACCTGCTAGAAGAAGCTTGTCGCCAGGGTCTTCCCTTCGCTTCATGGGATGGCCCCACGGTGGTTACATGGCTTGAGTTGTGGGTGGGCATGCCCGCCTGGTATGTGGCAGCATGTCGTGCCAATGTGAAGAGCGGTGCCATCATGGCCAACCTGTCGGACACAGAGATCCAGCGGGAGATTGGCATCAGTAACCCCCTGCACCGCCTGAAACTGCGCCTGGCCATCCAGGAGATGGTGTCCCTCACCAGCCCCTCGGCACCGGCCAGCACACGCTCCTCGACGAGTGATATATGGATGACTCATGCCGAAATGGAGTCACTGACCGCTGCCATAAAACCAGAAGTGAAGGAGTTCAGCTGGGACCAGATCCTTGCCTATGGGGACATGAACCATGAGTGGGTAGGGAATGAGTGGCTTCCCAGCCTGGGTCTGCCCCAGTACCGCTCCTACTTCATGGAGTCCCTGGTGGACGCTCGCATGCTGGACCACCTCACCAAGAAGGAGCTGAGGGGACAGCTCAAAATGGTGGACAGCTTCCACAGggtaaGTCTGCATTATGGCATCATGTGCTTGAAGCGTTTGAACTACGACAGGAAGGAGCTTgaaaggaggagggatgagagccAACATCAGAACCAAGATGTGATGGTATGGTCCAATGAGCGAGTGATGTGTTGGGTCCAGGCCATTGGGCTAAAGGAGTTTGCAGATAACCTCACAGAGAGTGGGGTACATGGGGCCCTCCTAGCCCTGGACGACACGTTTGACTACACTGACCTTGCCCTGCTCCTCCAGATACCCAATCAGAACACACAGGCGAGGCAGATGCTGGAGAAGGAGTACAATGCCCTCATCTCCATGGGAACTGAGAGAAGACCAGATGAGGACGGCACTAAGACGTTCACACGCTCGCCCTCGTGGAGGAAGATGTTCAGAGAGAAGGACCTCCGGGGCGTGACCTCTGACTCCTCAGAAACATTACCCGCCAACTTCCGTGCCTCCGCCATCTCCACGCCCTCCGTCACCCTGAGGAAAGTCCAGAGTGAAGTGAACTCTGGGCCCAGGGGTGAGTCGGGGTCAGTGAGAACATATTCCTGCTAGAGATAAGCACATCAGagagtccccccccccccccccccaaaaaaaaaaaaaaaagtttttgaagaaaaaaagatgaagatcatcaacaAAATGGAGAATAGAACACAAACAAAAAAGAATTCCACTGGAATCCTTGAAGAAACAAGGGCAATGTGAGAGAATGAAAATATACTAAAATAGAgtgaatgtctgtctgtccatttctctctctctctctctctccctccgtcttaGTCCACAGTTGTGGCATGAAGCTGTTCGATGCTGTAAAAAATGACTCCATCGCCCAGTGTGAAGTTCTTCTTCCATGTGCGAAATGGGAAAATTGACACAATGACTCTTGTTTTTTTCATTGGGATGTAAAACTGCATTTCCATTTGGATCAACAGAATTATGACCCTGATAGACGTTTCTTTGATTGGAATTGTCGATAGAACATGCATACCCTATCTCATTAACTGGTATTAGGATTTTGTTTCTCAACCTTTTTCTACCGTGGACAGGCGAGCTAAGGTATTTCCTTTACTCAGGACCCACAAGCTATGGTCCTTCTCTTTTGGGGAAGCACTTACATTAAAACTAGCATTTGAGTACTCACTAGGGTCAGGTACAGCTAAACATCTGAGGGATCGGTGAGAATCACCACAGGGACTGCTGTCGGTCCAGGGACCAGAGGTTGAGAAACAATGTACTGTATGAGGACAGAGTCATAAGGGTTAAAAAGGTGTTATGAAGGGAGAGTATGCGAGGGAATGAGGGAATGGATTCGTATGTTCTTAAGCCATAACAGACACCATGAGATGAGAAGGACCATGGACAATTGGTGAAGTGCATTATGACAAAATCCTGTTAAACAAAGAGAAAAGAATTGAACGTTTGTGTTAATATGCATgccaaaacaaaaacatagagTGAGAGTAATGAAATCAATCATCTAATGACGTGAAAACTTGGGTAAGGAATTTGTAAAATgggtgtattttattttttatcattttttaaaatgataacctCTATTGTATGTAGgtaggtaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtatgtatgtgtgtgtacagtatgtatgtattggACTGTATTTTAATTTCATACTTAGTTAAGATTGACTGTAATTTCATTTTAGGTTGAAAAGTAAATACGTTTCAAATGATGGACATTAAGATATACTACTTGTATGTGTACATTTTGAAAACAAATTGTGTTATGATTTAAACTAATATCAATAATGAAGAGTAGTGAGGATAATTAAATATAATATGATAACAATAATGATAATGATTGTAAAAGCTATAATTAAAAAAGACCTGTAAAATGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1547188 lncRNA upstream 626 22834613 ~ 22834895 (+) True G1353420
TU1547142 lncRNA upstream 66828 22768485 ~ 22768693 (+) True G1353387
TU1547082 lncRNA upstream 111048 22723472 ~ 22724473 (+) True G1353332
TU1547109 lncRNA upstream 113243 22721235 ~ 22722278 (+) True G1353355
TU1547069 lncRNA upstream 148415 22686863 ~ 22687106 (+) True G1353326
TU1547217 lncRNA downstream 15842 22891918 ~ 22892117 (+) True G1353449
TU1547218 lncRNA downstream 16347 22892423 ~ 22892814 (+) True G1353450
TU1547219 lncRNA downstream 17149 22893225 ~ 22893512 (+) True G1353451
TU1547160 lncRNA downstream 23015 22899091 ~ 22905565 (+) True G1353399
TU1547287 lncRNA downstream 127342 23003418 ~ 23007616 (+) False G1353506
XM_036946526.1 mRNA upstream 8044 22807411 ~ 22827477 (+) False si:ch211-234p6.5
XM_021565252.2 mRNA downstream 1181 22877257 ~ 22882635 (+) True fgf21
XM_021565261.2 mRNA downstream 108837 22984913 ~ 22987169 (+) True si:dkey-197c15.6
XM_021565263.2 mRNA downstream 137756 23013832 ~ 23043155 (+) True zgc:56095
XM_036946541.1 mRNA downstream 177781 23053857 ~ 23069999 (+) False syt5b
XM_021565264.2 mRNA downstream 180525 23056601 ~ 23069999 (+) True syt5b
TU1546739 other upstream 203216 22631879 ~ 22632305 (+) True G1353021
TU1545079 other upstream 835270 21999357 ~ 22000251 (+) False LOC110491629
TU1545030 other upstream 1154640 21679224 ~ 21680881 (+) True G1351501
TU1544874 other upstream 1430404 21402227 ~ 21405117 (+) True G1351366
TU1544755 other upstream 1614374 21220765 ~ 21221147 (+) True G1351274
TU1547300 other downstream 169193 23045269 ~ 23045884 (+) True G1353519
TU1547339 other downstream 247783 23123859 ~ 23126311 (+) False LOC110491658
TU1547458 other downstream 422381 23298457 ~ 23298753 (+) True G1353660
TU1547936 other downstream 604013 23480089 ~ 23488612 (+) True LOC110491671
TU1548546 other downstream 1117542 23993618 ~ 23995021 (+) True G1354668

Expression Profile