RNA id: XM_021565261.2


Basic Information

Item Value
RNA id XM_021565261.2
length 1769
RNA type mRNA
GC content 0.44
exon number 2
gene id si:dkey-197c15.6
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 22984913 ~ 22987169 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGACCATGTCCACCAATGAAGATGTACTTCCTTCCTCCACCACGTTTTTCATTGTTTACAATCGTTCGGCGCAAAGAAATTTGTGTATTTGAAGCTTAACGTGaatgaaatgtgacatgtttAGGATTTAGATAAGTAGCTTGCCGGAATGTTCTAATTCCATGCCGAGCATCCAACACGGGTTCTTTCTCTGCAAACATTTGCCTGTTAGTCTAGCCTAGACATGGCTTTTGCTCCCGCTGTGTGGTTAGCTGCTCAAGCAGAACTCTACGAGGACGACGAAGAGGCCGAGGTAAACAACTTCCCAGAGCCACAGAAAAACTACTTGGGCGATTACAatgatgattatttatttgagaggTTCCGTTTAACTAGACCTTGCATAAGTTTCATCACGGATTGCGTCAGGCTCCGGATGAAAGCCACGCTCCAGCAAATGAATGGACCTTCCGTCGATGAAATGGTGATAGTGGCACTGGACTATTACGTAAATGGTATTTTGTCGACCAAAGTCGTAGATATGATTCAAATGGAGCAAATGGAGATTCACGAAGTCATCAACAATGTCTCCAAAGTGTTGTCAGGTATGGTCAGGGAGTTTATCACTTTCCCGGCGAATGGTGAGGAACGAGCAAATGTGGCGCACGAGATCAAGAAAATATGCGGGATACCGACCTCCATGGGCTTGGTGGGATGCATGCATGTCAAGGTGAGACCACCTCATCACGACAAGGAAGCTTTTCGGAACACAATGGATAACCACACCGTCATGACCCAAGTCATATGCGATTGTGAAGGGAATTTAATGAGTGTTGAAAACTGCTGCGTTGGCAGCACACCAGAGCAAACCATATGGGATATGTCGGATATTGCCCAGCAGCTAAAGCATGGAGCACATGGGACGCATTGGATCATCGCCGGAAAAGGCTATGCGTTGAGCAGACACCTCCTGACGACCGTTTCACCAGCCAAAGAGAAAGCGGATCGGCGGTTCAATGCAGCCCACGGCATGATCCACTCGGTCCTCCAGAGGACCATCACCTTGGTGAAGAGGCGCTTCAGGTGCCTGGCCAATCTGGGCCACGTGCAGCAGAACAGTCTGGACAAGAAGGCTGAGATCATCAAGGCCTGCTGCGTCTTGCATAACATCGCCAAGAAGTTCTCGGTGCCTGTGCTCAACGATACCGTGCTAGAGACTATGCACCCGGCCGAGAATCACCAGGTGCCGGTGGTGGAGGTGCCTAGCTACGCAGAGAAATCCAGAGCTGCCATTATCGGCATTTATTTCTCGCATTCCTCCGGGAATGACGGCATTTCAGACTGAGAACAATGGAAATATTTGTATAAAATGGTTGTTGACATTTGGGTTTAATAGGAGGATGGTTCGGTCCCTTATTATAACAGTTTGTGAAAATAGGTGCTACTGGATTGACaaaaagtattttattttatCACGCTTTGTGATACATGAAAACCAAATGACAATACTTTGGGTTTATCTATTTACATGTTTTTATGCATTGTCAATAAACGTCAAGTAAAAATCTAATCCTTCATGAATCATTTCAATTGCAATTTAGAAATTGATAGGCTAAAATTGACATTTATTGAGAACACAAGCAGCATTTTCTAACACAATGATAAAAAAAGGTACCTAGGTGAATGTGAAGTGTGCTGAATTCTCCTGAACATAGCCAGTGAATGATTACATACAATATATGCTTAAACATTATGtacatgtgaatatatttaaatAAAAATCTTAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1547160 lncRNA upstream 79348 22899091 ~ 22905565 (+) True G1353399
TU1547219 lncRNA upstream 91401 22893225 ~ 22893512 (+) True G1353451
TU1547218 lncRNA upstream 92099 22892423 ~ 22892814 (+) True G1353450
TU1547217 lncRNA upstream 92796 22891918 ~ 22892117 (+) True G1353449
TU1547168 lncRNA upstream 148700 22828198 ~ 22836213 (+) True LOC110491647
TU1547287 lncRNA downstream 16249 23003418 ~ 23007616 (+) False G1353506
TU1547286 lncRNA downstream 17868 23005037 ~ 23007616 (+) True G1353506
TU1547302 lncRNA downstream 63361 23050530 ~ 23050755 (+) True G1353521
TU1547303 lncRNA downstream 65650 23052819 ~ 23053045 (+) True G1353522
TU1547312 lncRNA downstream 94447 23081616 ~ 23082242 (+) True G1353531
XM_021565252.2 mRNA upstream 102278 22877257 ~ 22882635 (+) True fgf21
XM_036946530.1 mRNA upstream 108837 22835520 ~ 22876076 (+) False LOC110491647
XM_021565263.2 mRNA downstream 26663 23013832 ~ 23043155 (+) True zgc:56095
XM_036946541.1 mRNA downstream 66688 23053857 ~ 23069999 (+) False syt5b
XM_021565264.2 mRNA downstream 69432 23056601 ~ 23069999 (+) True syt5b
XM_021565265.2 mRNA downstream 83622 23070791 ~ 23078486 (+) False LOC110491656
XM_021565266.2 mRNA downstream 83716 23070885 ~ 23078486 (+) True LOC110491656
TU1546739 other upstream 352608 22631879 ~ 22632305 (+) True G1353021
TU1545079 other upstream 984662 21999357 ~ 22000251 (+) False LOC110491629
TU1545030 other upstream 1304032 21679224 ~ 21680881 (+) True G1351501
TU1544874 other upstream 1579796 21402227 ~ 21405117 (+) True G1351366
TU1544755 other upstream 1763766 21220765 ~ 21221147 (+) True G1351274
TU1547300 other downstream 58100 23045269 ~ 23045884 (+) True G1353519
TU1547339 other downstream 136690 23123859 ~ 23126311 (+) False LOC110491658
TU1547458 other downstream 311288 23298457 ~ 23298753 (+) True G1353660
TU1547936 other downstream 492920 23480089 ~ 23488612 (+) True LOC110491671
TU1548546 other downstream 1006449 23993618 ~ 23995021 (+) True G1354668

Expression Profile