RNA id: XM_021564381.2


Basic Information

Item Value
RNA id XM_021564381.2
length 3397
RNA type mRNA
GC content 0.46
exon number 11
gene id becn1
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 23551793 ~ 23567658 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTCATTTCGCGGATTCTTTTGCAAAAAAAGTTTCTTAAACGGAACGAAACTGGGatgggacctacctgaatttgtccaatcgAACTGAAGTTTTGCATCtatttggactaatgattacaccccacgTTTGTGGCAACCTCTTCCCTTTACACACAAGTGTTCGCAGATAGTTTATTAACACAGATAGTCAGTCCACTGTCTGTTTTCCGTCAACAAACACGGTAACATGGCAGTGTGGTAATAACCCTAACGCTATACAGGTGTAGTCTTTTACCTTTTGTTTTTTGACAATTATTTCTCGCTGATATAAAAGGTAACGTTATGTAGCTTAAGTTTCCAAAACAGTACCGCAAGCGATTCCTGTTAATGTTTAGGGCAAGCATCGGGGTTCTTAACTAAATTCACCCAGTCAGTAGTCGCAAAAGTAGTTGGCGTCCATGAATGGGTGTTGTTATGGAGGGCTCCAAGTCCTCTAGTACCACCATGCAGGTCAGCTTTGTGTGTCAGCGCTGCAGTCAGCCTCTAAAGCTGGATACATCCTTCAATGTGCTCGACCGTGTCACCATCCAGGAACTTATTGCTCCTCTGGTCACAGTGACACCAAGCAAGCAGACAGAAAGCAATGAGGCGGAAAGTGCTCCAGAGgaAACCTTTGTGGAAACAAAGCAAGATGGAGTCGCAAGAAAATACATCCCTCCTGCAAGgatGATGTCTACAGAGAGCGCCAACAGCTTCACTCTGATTGGAGAAGCGTCGGACGGAGGCACCATGGAGAACCTCAGTCGGAGGCTGAAGGTGACCAGCGATCTGTTTGACATCATGTCGGGCCAGACCGACGTAGACCACCCGCTGTGCGAGGAGTGTACTGACACCCTGCTAGACCACCTGGACACGCAGCTCAACATCACAGAGAACGAGTGCCAGAACTACAAGAACTGCCTGGAGCTGCTGTCCCagctgaaggaggaggaggaggacagcctGTTGCTGGAGCTCCAGAAACTGGGCGAGGAGGAGTCGTCACTGGTGGGGGAGCTGGAGGCGGTGGAAGAGCAGAGGGCTGCCGTGGCCGAGGACCTGGTCCAGGGACGCAGCCACTCCCAGCAGCTAGATACTGAGGAACTGCAGTACCAGAAGGAGTACAGTGAGTTCAAGCGGCAGCAGCTGGAGCTGGATGACGAGCTGAAGAGTGTGGACAACCAGATGCGATACTGCCAGATTCAACTGGACCGCCTGAAGAAGACCAACGTCTTCAACGCCACCTTCCACATCTGGCACAGTGGCCAGTTTGGCACCATCAATAACTTCCGTCTGGGCCGACTACCCAGTGTCCCCGTCGAGTGGAACGAGATCAACGCCGCCTGGGGTCAGACCGTGCTACTGCTCCACGCCCTCGCCAACAAGATGGGGCTACGCTTCCAGAGATACCGCCTGGTCCCATATGGAAACCACTCTTACCTGGAGTCACTTACAGACAAGTCCAAGGAGCTACCTCTGTACTGTTCAGGGGGCCTGCGCTTCTTCTGGGACAACAAGTTTGACCATGCCATGGTGGCCTTCCTGGACTGTGTGCAGCAGTtcaaggaggaggtggagaagggagACACGGGATTCTGCCTGCCTTACAGGATGGATGTCGAGAAGGGCAAGATTGAGGACACGGGAGGCAGCGGCGGCTCCTACTCCATCAAGACCCAGTTCAACTCGGAGGAGCAGTGGACCAAGGCGCTCAAGTTCATGTTGACCAACCTCAAGTGGGGTCTGGCGTGGGTGTCGTCTCAGTTTTACAACCgatagaggaggaagatgaggaatcACCCTGGGTGTGCCCCTTGACCCTTCTAAAACTACAATTTCGTCACAATGTGTTACTCTCTAAAGTTCTTCTTCTACAATGCTCTCCTTGCTTCCCTGTGATGTTTTGAGAGGGTGGGGAGAAGACTGGAGGAAGGACTTTTGAGATTCACCACTGGTGTGAGTTCCAATCCAATACGTCTTGTTTCCTTGTTTGATTTCCACATTGACCATATgaaaggacaaaataaaaactgtTAAATTGTTCACATTCAAGTCCGCCTAGACTCATAGGTGTTATGAAGGGAGCTATCTGAGACTTTTGGAACACATTCCAGGATTGAGTCCTAATAGTAGCTAAGTGGCTTCTGGTTGTGTCTTTTCCTTCATATGCACATATCTTATGACACTGGATAGGTGAAAGCTGTTGTTTCCAACCTGTTCAATTCTTATAGATCAGTACacatgaagggaaggagagaaggacacATTGAACTACTGAGATGCAGCACTGGAATGGGTTCTTATGTATCATGTGCTTCTTACTGTGCTCCAGAACCAATACTGGAGAGTCACGTATCTGGTTTTGTGCCTATTTTTCTTCAATTGGTTTGTGTCTTTCTCATTCAACTCCACTCTATCTGCAGAAAAAAATTACATTTATTATGTTTTAATAGTTTTTCTTTTACTGTGCTGACACGGTAAAGATGGTTTAATTTCACCACGCGTTGGAACAGCATTGGAACATTTGCCTTGTCTGTTCTCTTGTCACCCCACTTGCAGGGCGCACCAAGTGTCTACCGAAAGCTTTGGCGTCGGGATTATGCTGTGCTTTTGTTGATTGGCAAATTCAACAAGGCAATCCTTTTACTACAAGTGACTTCTTGGTGTAGATTTAAATGTAGACAAGGAGGCTTGTGGCAGTATTTAATACCCATATCACTATATGATTTGGTTTTTCAGGTCCATTACACATATGAAAATGCCAATAATGGACTCACAGAGAACGCCTCATGTAAAAGGATATTTccaattctaacatttgtataAAAAAAGGTAATCAAAATTTTAGACAGATTGCTTGATTTATtgatttacgtaagtattcaacctcgagtcaatacatgttaaaatcacctttggcagagattacagctgagagtctttctgggtaagtctctaaatgCTTTGCACACCAGGATTGCATGTgagtcttcaagctctgtcaagttggatgttgatcattgctacaAAGACATTTAAGTCTTACCATAtaattttaagtcaaaactaactctggaacattcaatgtcgtcttggtaagcaactccagtgtatatttggccttgtgttttaggttattgtcctgctaaaagttgaatatctcccagtgtctgtaaagcagactgaaccaggttttcctctaggaatttgcctgtgcttagcgctATGCTGTTTATTTTCGTCATAAACATCCTTGCCGATGACAGGCATGCAGCCACCCCCATGCTTGAAATTTTGAAGAGTGCTCAGTTATTTGttgttggatttgctccaaatataacactttgtattcaggacataaaatgtatttaattgcca

Function

GO:

id name namespace
GO:0006914 autophagy biological_process

KEGG:

id description
K08334 BECN, VPS30, ATG6; beclin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1547975 lncRNA upstream 45442 23505186 ~ 23506816 (+) True G1354136
TU1547954 lncRNA upstream 91741 23454181 ~ 23460517 (+) True G1354115
TU1547952 lncRNA upstream 92886 23453127 ~ 23459372 (+) True G1354114
TU1547916 lncRNA upstream 157226 23390762 ~ 23395032 (+) True G1354084
TU1547913 lncRNA upstream 166089 23385804 ~ 23386169 (+) True G1354081
TU1548042 lncRNA downstream 29959 23597617 ~ 23620902 (+) False G1354199
TU1548041 lncRNA downstream 48786 23616444 ~ 23620902 (+) True G1354199
TU1548062 lncRNA downstream 136241 23703899 ~ 23712056 (+) True G1354215
TU1548009 lncRNA downstream 214791 23782449 ~ 23784110 (+) True G1354168
TU1548134 lncRNA downstream 260244 23827902 ~ 23916365 (+) True G1354281
XM_036946560.1 mRNA upstream 63476 23430867 ~ 23488782 (+) False LOC110491671
XM_021565293.2 mRNA upstream 63476 23430868 ~ 23488782 (+) False LOC110491671
XM_021565291.2 mRNA upstream 147634 23399396 ~ 23404624 (+) True LOC110491669
XM_036946552.1 mRNA upstream 287949 23248663 ~ 23264309 (+) False LOC110491666
XM_036946553.1 mRNA upstream 288834 23248659 ~ 23263424 (+) False LOC110491666
trnag-ccc-4 mRNA downstream 23040 23590698 ~ 23590769 (+) True trnag-ccc-4
trnaw-cca-8 mRNA downstream 24218 23591876 ~ 23591947 (+) True trnaw-cca-8
trnaw-cca-9 mRNA downstream 26584 23594242 ~ 23594313 (+) True trnaw-cca-9
trnaw-cca-10 mRNA downstream 27772 23595430 ~ 23595501 (+) True trnaw-cca-10
trnaw-cca-11 mRNA downstream 28960 23596618 ~ 23596689 (+) True trnaw-cca-11
TU1547936 other upstream 63646 23480089 ~ 23488612 (+) True LOC110491671
TU1547458 other upstream 253505 23298457 ~ 23298753 (+) True G1353660
TU1547339 other upstream 425947 23123859 ~ 23126311 (+) False LOC110491658
TU1547300 other upstream 506374 23045269 ~ 23045884 (+) True G1353519
TU1546739 other upstream 919953 22631879 ~ 22632305 (+) True G1353021
TU1548546 other downstream 425960 23993618 ~ 23995021 (+) True G1354668
TU1548560 other downstream 518050 24085708 ~ 24090034 (+) True G1354681
TU1549199 other downstream 1102781 24670439 ~ 24680719 (+) False LOC110491698
TU1549194 other downstream 1102941 24670599 ~ 24681115 (+) True LOC110491698
TU1549200 other downstream 1113756 24681414 ~ 24683919 (+) False G1355273

Expression Profile