RNA id: trnaw-cca-11


Basic Information

Item Value
RNA id trnaw-cca-11
length 72
RNA type mRNA
GC content 0.57
exon number 1
gene id trnaw-cca-11
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 23596618 ~ 23596689 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACCTCGTGCCGCAAAGGTAGcgtgtctgactccagatcagaaggttgcgtgttcaaatcacGTCGTGGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1547975 lncRNA upstream 89802 23505186 ~ 23506816 (+) True G1354136
TU1547954 lncRNA upstream 136101 23454181 ~ 23460517 (+) True G1354115
TU1547952 lncRNA upstream 137246 23453127 ~ 23459372 (+) True G1354114
TU1547916 lncRNA upstream 201586 23390762 ~ 23395032 (+) True G1354084
TU1547913 lncRNA upstream 210449 23385804 ~ 23386169 (+) True G1354081
TU1548042 lncRNA downstream 928 23597617 ~ 23620902 (+) False G1354199
TU1548041 lncRNA downstream 19755 23616444 ~ 23620902 (+) True G1354199
TU1548062 lncRNA downstream 107210 23703899 ~ 23712056 (+) True G1354215
TU1548009 lncRNA downstream 185760 23782449 ~ 23784110 (+) True G1354168
TU1548134 lncRNA downstream 231213 23827902 ~ 23916365 (+) True G1354281
trnaw-cca-10 mRNA upstream 1117 23595430 ~ 23595501 (+) True trnaw-cca-10
trnaw-cca-9 mRNA upstream 2305 23594242 ~ 23594313 (+) True trnaw-cca-9
trnaw-cca-8 mRNA upstream 4671 23591876 ~ 23591947 (+) True trnaw-cca-8
trnag-ccc-4 mRNA upstream 5849 23590698 ~ 23590769 (+) True trnag-ccc-4
XM_021564381.2 mRNA upstream 28960 23552258 ~ 23567658 (+) True becn1
trnaw-cca-12 mRNA downstream 1117 23597806 ~ 23597877 (+) True trnaw-cca-12
trnaw-cca-13 mRNA downstream 2305 23598994 ~ 23599065 (+) True trnaw-cca-13
trnaw-cca-14 mRNA downstream 3493 23600182 ~ 23600253 (+) True trnaw-cca-14
trnaw-cca-15 mRNA downstream 4681 23601370 ~ 23601441 (+) True trnaw-cca-15
trnaw-cca-16 mRNA downstream 18791 23615480 ~ 23615551 (+) True trnaw-cca-16
TU1547936 other upstream 108006 23480089 ~ 23488612 (+) True LOC110491671
TU1547458 other upstream 297865 23298457 ~ 23298753 (+) True G1353660
TU1547339 other upstream 470307 23123859 ~ 23126311 (+) False LOC110491658
TU1547300 other upstream 550734 23045269 ~ 23045884 (+) True G1353519
TU1546739 other upstream 964313 22631879 ~ 22632305 (+) True G1353021
TU1548546 other downstream 396929 23993618 ~ 23995021 (+) True G1354668
TU1548560 other downstream 489019 24085708 ~ 24090034 (+) True G1354681
TU1549199 other downstream 1073750 24670439 ~ 24680719 (+) False LOC110491698
TU1549194 other downstream 1073910 24670599 ~ 24681115 (+) True LOC110491698
TU1549200 other downstream 1084725 24681414 ~ 24683919 (+) False G1355273