RNA id: trnaw-cca-28


Basic Information

Item Value
RNA id trnaw-cca-28
length 72
RNA type mRNA
GC content 0.54
exon number 1
gene id trnaw-cca-28
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 23631353 ~ 23631424 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACCTCGTGCCGCAAAGGTAGcgtgtctgactccagatcagaaggttgcgtgttcaaatcacgtcgtggtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1548042 lncRNA upstream 10451 23597617 ~ 23620902 (+) False G1354199
TU1548041 lncRNA upstream 10451 23616444 ~ 23620902 (+) True G1354199
TU1547975 lncRNA upstream 124537 23505186 ~ 23506816 (+) True G1354136
TU1547954 lncRNA upstream 170836 23454181 ~ 23460517 (+) True G1354115
TU1547952 lncRNA upstream 171981 23453127 ~ 23459372 (+) True G1354114
TU1548062 lncRNA downstream 72475 23703899 ~ 23712056 (+) True G1354215
TU1548009 lncRNA downstream 151025 23782449 ~ 23784110 (+) True G1354168
TU1548134 lncRNA downstream 196478 23827902 ~ 23916365 (+) True G1354281
TU1548139 lncRNA downstream 203435 23834859 ~ 23859610 (+) True G1354286
TU1548013 lncRNA downstream 219899 23851323 ~ 23856448 (+) True G1354172
trnaw-cca-27 mRNA upstream 1092 23630190 ~ 23630261 (+) True trnaw-cca-27
trnaw-cca-26 mRNA upstream 2282 23629000 ~ 23629071 (+) True trnaw-cca-26
trnaw-cca-25 mRNA upstream 3470 23627812 ~ 23627883 (+) True trnaw-cca-25
trnaw-cca-24 mRNA upstream 4662 23626620 ~ 23626691 (+) True trnaw-cca-24
trnaw-cca-23 mRNA upstream 5854 23625428 ~ 23625499 (+) True trnaw-cca-23
trnar-ccu-49 mRNA downstream 1117 23632541 ~ 23632612 (+) True trnar-ccu-49
trnaw-cca-29 mRNA downstream 2300 23633724 ~ 23633795 (+) True trnaw-cca-29
trnaw-cca-30 mRNA downstream 3488 23634912 ~ 23634983 (+) True trnaw-cca-30
trnar-ccu-50 mRNA downstream 4675 23636099 ~ 23636170 (+) True trnar-ccu-50
trnar-ccu-51 mRNA downstream 5863 23637287 ~ 23637358 (+) True trnar-ccu-51
TU1547936 other upstream 142741 23480089 ~ 23488612 (+) True LOC110491671
TU1547458 other upstream 332600 23298457 ~ 23298753 (+) True G1353660
TU1547339 other upstream 505042 23123859 ~ 23126311 (+) False LOC110491658
TU1547300 other upstream 585469 23045269 ~ 23045884 (+) True G1353519
TU1546739 other upstream 999048 22631879 ~ 22632305 (+) True G1353021
TU1548546 other downstream 362194 23993618 ~ 23995021 (+) True G1354668
TU1548560 other downstream 454284 24085708 ~ 24090034 (+) True G1354681
TU1549199 other downstream 1039015 24670439 ~ 24680719 (+) False LOC110491698
TU1549194 other downstream 1039175 24670599 ~ 24681115 (+) True LOC110491698
TU1549200 other downstream 1049990 24681414 ~ 24683919 (+) False G1355273