RNA id: trnaw-cca-30


Basic Information

Item Value
RNA id trnaw-cca-30
length 72
RNA type mRNA
GC content 0.51
exon number 1
gene id trnaw-cca-30
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 23634912 ~ 23634983 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACCTTGTGCCGCAAAGGTAGCGTGTCTGACTCCaaatcagaaggttgcgtgttcaaatcacgtcgtggtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1548042 lncRNA upstream 14010 23597617 ~ 23620902 (+) False G1354199
TU1548041 lncRNA upstream 14010 23616444 ~ 23620902 (+) True G1354199
TU1547975 lncRNA upstream 128096 23505186 ~ 23506816 (+) True G1354136
TU1547954 lncRNA upstream 174395 23454181 ~ 23460517 (+) True G1354115
TU1547952 lncRNA upstream 175540 23453127 ~ 23459372 (+) True G1354114
TU1548062 lncRNA downstream 68916 23703899 ~ 23712056 (+) True G1354215
TU1548009 lncRNA downstream 147466 23782449 ~ 23784110 (+) True G1354168
TU1548134 lncRNA downstream 192919 23827902 ~ 23916365 (+) True G1354281
TU1548139 lncRNA downstream 199876 23834859 ~ 23859610 (+) True G1354286
TU1548013 lncRNA downstream 216340 23851323 ~ 23856448 (+) True G1354172
trnaw-cca-29 mRNA upstream 1117 23633724 ~ 23633795 (+) True trnaw-cca-29
trnar-ccu-49 mRNA upstream 2300 23632541 ~ 23632612 (+) True trnar-ccu-49
trnaw-cca-28 mRNA upstream 3488 23631353 ~ 23631424 (+) True trnaw-cca-28
trnaw-cca-27 mRNA upstream 4651 23630190 ~ 23630261 (+) True trnaw-cca-27
trnaw-cca-26 mRNA upstream 5841 23629000 ~ 23629071 (+) True trnaw-cca-26
trnar-ccu-50 mRNA downstream 1116 23636099 ~ 23636170 (+) True trnar-ccu-50
trnar-ccu-51 mRNA downstream 2304 23637287 ~ 23637358 (+) True trnar-ccu-51
trnaw-cca-31 mRNA downstream 3493 23638476 ~ 23638547 (+) True trnaw-cca-31
trnaw-cca-32 mRNA downstream 4684 23639667 ~ 23639738 (+) True trnaw-cca-32
trnaw-cca-33 mRNA downstream 5878 23640861 ~ 23640932 (+) True trnaw-cca-33
TU1547936 other upstream 146300 23480089 ~ 23488612 (+) True LOC110491671
TU1547458 other upstream 336159 23298457 ~ 23298753 (+) True G1353660
TU1547339 other upstream 508601 23123859 ~ 23126311 (+) False LOC110491658
TU1547300 other upstream 589028 23045269 ~ 23045884 (+) True G1353519
TU1546739 other upstream 1002607 22631879 ~ 22632305 (+) True G1353021
TU1548546 other downstream 358635 23993618 ~ 23995021 (+) True G1354668
TU1548560 other downstream 450725 24085708 ~ 24090034 (+) True G1354681
TU1549199 other downstream 1035456 24670439 ~ 24680719 (+) False LOC110491698
TU1549194 other downstream 1035616 24670599 ~ 24681115 (+) True LOC110491698
TU1549200 other downstream 1046431 24681414 ~ 24683919 (+) False G1355273