RNA id: trnaw-cca-32


Basic Information

Item Value
RNA id trnaw-cca-32
length 72
RNA type mRNA
GC content 0.54
exon number 1
gene id trnaw-cca-32
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 23639667 ~ 23639738 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACCTCGTGCCGCAAAGGTAGcgtgtctgactccagatcagaaggttgcgtgttcaaatcacgtcgtggtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1548042 lncRNA upstream 18765 23597617 ~ 23620902 (+) False G1354199
TU1548041 lncRNA upstream 18765 23616444 ~ 23620902 (+) True G1354199
TU1547975 lncRNA upstream 132851 23505186 ~ 23506816 (+) True G1354136
TU1547954 lncRNA upstream 179150 23454181 ~ 23460517 (+) True G1354115
TU1547952 lncRNA upstream 180295 23453127 ~ 23459372 (+) True G1354114
TU1548062 lncRNA downstream 64161 23703899 ~ 23712056 (+) True G1354215
TU1548009 lncRNA downstream 142711 23782449 ~ 23784110 (+) True G1354168
TU1548134 lncRNA downstream 188164 23827902 ~ 23916365 (+) True G1354281
TU1548139 lncRNA downstream 195121 23834859 ~ 23859610 (+) True G1354286
TU1548013 lncRNA downstream 211585 23851323 ~ 23856448 (+) True G1354172
trnaw-cca-31 mRNA upstream 1120 23638476 ~ 23638547 (+) True trnaw-cca-31
trnar-ccu-51 mRNA upstream 2309 23637287 ~ 23637358 (+) True trnar-ccu-51
trnar-ccu-50 mRNA upstream 3497 23636099 ~ 23636170 (+) True trnar-ccu-50
trnaw-cca-30 mRNA upstream 4684 23634912 ~ 23634983 (+) True trnaw-cca-30
trnaw-cca-29 mRNA upstream 5872 23633724 ~ 23633795 (+) True trnaw-cca-29
trnaw-cca-33 mRNA downstream 1123 23640861 ~ 23640932 (+) True trnaw-cca-33
trnaw-cca-34 mRNA downstream 2314 23642052 ~ 23642123 (+) True trnaw-cca-34
trnaw-cca-35 mRNA downstream 8684 23648422 ~ 23648493 (+) True trnaw-cca-35
trnaw-cca-36 mRNA downstream 10146 23649884 ~ 23649955 (+) True trnaw-cca-36
trnaw-cca-37 mRNA downstream 11785 23651523 ~ 23651594 (+) True trnaw-cca-37
TU1547936 other upstream 151055 23480089 ~ 23488612 (+) True LOC110491671
TU1547458 other upstream 340914 23298457 ~ 23298753 (+) True G1353660
TU1547339 other upstream 513356 23123859 ~ 23126311 (+) False LOC110491658
TU1547300 other upstream 593783 23045269 ~ 23045884 (+) True G1353519
TU1546739 other upstream 1007362 22631879 ~ 22632305 (+) True G1353021
TU1548546 other downstream 353880 23993618 ~ 23995021 (+) True G1354668
TU1548560 other downstream 445970 24085708 ~ 24090034 (+) True G1354681
TU1549199 other downstream 1030701 24670439 ~ 24680719 (+) False LOC110491698
TU1549194 other downstream 1030861 24670599 ~ 24681115 (+) True LOC110491698
TU1549200 other downstream 1041676 24681414 ~ 24683919 (+) False G1355273