RNA id: trnaw-cca-51


Basic Information

Item Value
RNA id trnaw-cca-51
length 72
RNA type mRNA
GC content 0.56
exon number 1
gene id trnaw-cca-51
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 23678437 ~ 23678508 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACCTCGTGGTGCAaaggtagcgcgtctgactccagatcagaaggttgcgtgttcaaatcgcgtcgtggtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1548042 lncRNA upstream 57535 23597617 ~ 23620902 (+) False G1354199
TU1548041 lncRNA upstream 57535 23616444 ~ 23620902 (+) True G1354199
TU1547975 lncRNA upstream 171621 23505186 ~ 23506816 (+) True G1354136
TU1547954 lncRNA upstream 217920 23454181 ~ 23460517 (+) True G1354115
TU1547952 lncRNA upstream 219065 23453127 ~ 23459372 (+) True G1354114
TU1548062 lncRNA downstream 25391 23703899 ~ 23712056 (+) True G1354215
TU1548009 lncRNA downstream 103941 23782449 ~ 23784110 (+) True G1354168
TU1548134 lncRNA downstream 149394 23827902 ~ 23916365 (+) True G1354281
TU1548139 lncRNA downstream 156351 23834859 ~ 23859610 (+) True G1354286
TU1548013 lncRNA downstream 172815 23851323 ~ 23856448 (+) True G1354172
trnaw-cca-50 mRNA upstream 2027 23676339 ~ 23676410 (+) True trnaw-cca-50
trnaw-cca-49 mRNA upstream 3670 23674696 ~ 23674767 (+) True trnaw-cca-49
trnaw-cca-48 mRNA upstream 6841 23671525 ~ 23671596 (+) True trnaw-cca-48
trnaw-cca-47 mRNA upstream 9612 23668754 ~ 23668825 (+) True trnaw-cca-47
trnaw-cca-46 mRNA upstream 10685 23667681 ~ 23667752 (+) True trnaw-cca-46
trnaw-cca-52 mRNA downstream 1721 23680229 ~ 23680300 (+) True trnaw-cca-52
trnaw-cca-53 mRNA downstream 2798 23681306 ~ 23681377 (+) True trnaw-cca-53
trnaw-cca-54 mRNA downstream 5938 23684446 ~ 23684517 (+) True trnaw-cca-54
trnaw-cca-55 mRNA downstream 7170 23685678 ~ 23685749 (+) True trnaw-cca-55
XM_021565304.2 mRNA downstream 219113 23897621 ~ 23901382 (+) True neurod2
TU1547936 other upstream 189825 23480089 ~ 23488612 (+) True LOC110491671
TU1547458 other upstream 379684 23298457 ~ 23298753 (+) True G1353660
TU1547339 other upstream 552126 23123859 ~ 23126311 (+) False LOC110491658
TU1547300 other upstream 632553 23045269 ~ 23045884 (+) True G1353519
TU1546739 other upstream 1046132 22631879 ~ 22632305 (+) True G1353021
TU1548546 other downstream 315110 23993618 ~ 23995021 (+) True G1354668
TU1548560 other downstream 407200 24085708 ~ 24090034 (+) True G1354681
TU1549199 other downstream 991931 24670439 ~ 24680719 (+) False LOC110491698
TU1549194 other downstream 992091 24670599 ~ 24681115 (+) True LOC110491698
TU1549200 other downstream 1002906 24681414 ~ 24683919 (+) False G1355273