RNA id: trnaw-cca-53


Basic Information

Item Value
RNA id trnaw-cca-53
length 72
RNA type mRNA
GC content 0.54
exon number 1
gene id trnaw-cca-53
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 23681306 ~ 23681377 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACCTTGTGGCGCAaaggtagcgcgtctgactccagatcagaaggttgcgtgttcaaatcacgtcgtggtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1548042 lncRNA upstream 60404 23597617 ~ 23620902 (+) False G1354199
TU1548041 lncRNA upstream 60404 23616444 ~ 23620902 (+) True G1354199
TU1547975 lncRNA upstream 174490 23505186 ~ 23506816 (+) True G1354136
TU1547954 lncRNA upstream 220789 23454181 ~ 23460517 (+) True G1354115
TU1547952 lncRNA upstream 221934 23453127 ~ 23459372 (+) True G1354114
TU1548062 lncRNA downstream 22522 23703899 ~ 23712056 (+) True G1354215
TU1548009 lncRNA downstream 101072 23782449 ~ 23784110 (+) True G1354168
TU1548134 lncRNA downstream 146525 23827902 ~ 23916365 (+) True G1354281
TU1548139 lncRNA downstream 153482 23834859 ~ 23859610 (+) True G1354286
TU1548013 lncRNA downstream 169946 23851323 ~ 23856448 (+) True G1354172
trnaw-cca-52 mRNA upstream 1006 23680229 ~ 23680300 (+) True trnaw-cca-52
trnaw-cca-51 mRNA upstream 2798 23678437 ~ 23678508 (+) True trnaw-cca-51
trnaw-cca-50 mRNA upstream 4896 23676339 ~ 23676410 (+) True trnaw-cca-50
trnaw-cca-49 mRNA upstream 6539 23674696 ~ 23674767 (+) True trnaw-cca-49
trnaw-cca-48 mRNA upstream 9710 23671525 ~ 23671596 (+) True trnaw-cca-48
trnaw-cca-54 mRNA downstream 3069 23684446 ~ 23684517 (+) True trnaw-cca-54
trnaw-cca-55 mRNA downstream 4301 23685678 ~ 23685749 (+) True trnaw-cca-55
XM_021565304.2 mRNA downstream 216244 23897621 ~ 23901382 (+) True neurod2
XM_021565305.2 mRNA downstream 248450 23929827 ~ 23952690 (+) True med1
XM_021565307.2 mRNA downstream 420702 24102079 ~ 24147369 (+) False gpam
TU1547936 other upstream 192694 23480089 ~ 23488612 (+) True LOC110491671
TU1547458 other upstream 382553 23298457 ~ 23298753 (+) True G1353660
TU1547339 other upstream 554995 23123859 ~ 23126311 (+) False LOC110491658
TU1547300 other upstream 635422 23045269 ~ 23045884 (+) True G1353519
TU1546739 other upstream 1049001 22631879 ~ 22632305 (+) True G1353021
TU1548546 other downstream 312241 23993618 ~ 23995021 (+) True G1354668
TU1548560 other downstream 404331 24085708 ~ 24090034 (+) True G1354681
TU1549199 other downstream 989062 24670439 ~ 24680719 (+) False LOC110491698
TU1549194 other downstream 989222 24670599 ~ 24681115 (+) True LOC110491698
TU1549200 other downstream 1000037 24681414 ~ 24683919 (+) False G1355273