RNA id: XM_021565305.2


Basic Information

Item Value
RNA id XM_021565305.2
length 6600
RNA type mRNA
GC content 0.57
exon number 16
gene id med1
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 23929827 ~ 23952690 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCGTTGACTACGAAGTCCCACCCACTACGGAAGTCCAGTGCGAAGCGACAGTGTAGCTAGCAAAAAGACGCTAGCTAGTGAAGATGGCGGCGGTTTCTATGCAGGGCTGTAGCCCAAACCCAGCAAGAGAACTTACCCTTTCAACACAATCTGGGGGAAACCAGGCTCTTGCAGATCGGGTAAAAGCTGAAGAAGGGACAGAAGCCGAGAAGCAGAGTCGCGTGAACGCTCTGCTGGAGAGACTCCATGCCAAACACAATGCCTCACGGCCTTGGCAGGAGACCAGCAAGGTGGTGCGCCAGGCCATGGAGAAACGTGGTCAGATGAATGCGGCTGGACACCAGCTCCTGCTCACCTGTCTAGAGACCCTGCAGAAAGCACTGAAAGTATCCTCCCTGCCGTCCATGACAGATCGCTTGGAGTCCATCGCTCGACAGAACATGCTGGGGTCCCATCTGAGTCCTTCGGGGACAGAATGTTACATCACTTCAGACATGTTCTATGTGGAGGTGCAGCTGGACACGGCTGGTCAGCTGGTGGATGTGAAGGTGGCCCACCACGGAGAGAACCCTGCGAGCTGTCCGGAGCTGATTCAACACCTGAGGGATAAGAACTTTGAAGAGTTCTCCAAACATCTTAAGGGCCTAGTCAACCTGTACAAGCTTCCTGGAGACAATAAGCTGAAAACAAAGATGTACCTGGCACTTCAATCCCTCGAGCTGGATCTTACCAAGATGATGCACATGTTCAGgttaGCCACCAACGCTAACACGGTGGAGACCATCCTTCATGGGAGCGTGGGTCTGCTGACAGCCAGGAGCGGCGGCCATCTTGTCTCCCTCCAGTGCTACGTGTCCCCGTATGATGTGTTCGAGGAAAGAACAGGCTCGCAGCTCAACTTCACCGACACAAATGTCCCTCGCTCTCTGGGTGTGAGTGTATCTGTGACGGTGGAGGGGACCTCGTCAATCTACAAGCTACCCATCGCCCCCCTCATCACGGGATCTCACCCAGTGGACAACAAGGGAACCCCCTCCTTCTCGTCTGTGACCAACTCCAACTGTGTGGACCTTCCTGCCTCTTTCTTCCTCAAGATGAACCTGCCCatgcccttctccctctccttcatccaGAGGATGGGTAATGCTACAGGGATTCCTGTGTTTGAGACACCCCCCACCCTGTCGCCCCTCTACGAGCTCATCGTCCAGAATCAACTCCAGGAGGAGGGGGGGAACCCCCTGACCGCCCCCACACACGCCATGCGCTTCTACGCTTCGTTGCCCGACCAGCAGCACTGCTACTTCCTGAATGGCGACGCCCCGGTGCAGGACGGGCACTCGCTGCAGGGGACGCTGGTGTCCAAGATCCCCTTCCGCCACCCAGCCCAGGTGCCCGCCCTACTGGATGTTATCAGGCACCAGGCAGCCGCCAACACACTGATTGGCAGCTGCGTCAAGCGCACCTTCATCAAGGATGACACTCCAGGACTGCTACAGTTTGAGGTGTGTCCTCTGACCGACTCCAGCTTCAGCGTCTCCTTCCAGCACCCTGTTAACGAGTCCCTAGTCTGTGTGGTTATGGAGGTGATTGACTCCAGGCAGGTGTCCTGTAAGCTGTACAAAGGCCTTTCCGATGCCTTGATCTGCACTGACGATTTTATCACCAAAGTGGTCCAGAGGTGCATGTCCATCCCTGTCACCATGCGGGCCATCCGGCGGAAAGCGGAGACCATCCAGGCAGACACGCCAGCCCTCTCCCTGATTGCCGAGACGGTGGAGATCATGGTGAAAAAGAACTTACCCCCTGCTGGAAGCCCCGGGTACGGCATGGGCACAGGGGTTGACCCCACCAACCCCATGGGGCTCCCGGGTGTCGGTGGAGGCAACACTCCCACCGGGAACAGTGGGGGAGGTAACTTTGCCGGCCCAATCACATCTCTGTTCGGGATAAGTCGCAGCCAAAGCCAGGGGGGAGAGTGTACACCCCAGGGTGGGGCAGCTGGACAGCAACAGCAGGGGGGTCAATCAGGGGACGACTTCAGCAAAGTGACCCAGAATCCCATTCTGACCAGCTTGCTGCAGATCACGGGCGCTGTGGGCACTAGCCCCACTCCCCAGAACAGCTCTTCCGGATCGCAACCCCACCAGACTccgcctcccacctcctcccctgCCACCAACACCAAGAACCACCCCATGTTAATGAACCTGCTGAAAGACAACCCCGCCCAGGACTTTGCTGCCCTCTATGGCTCTAGTCCCCTAGAGAGGCAGAACTCTTCCTCTGGGTCGCCACGCACTGATGGCATGGGTGGCACCTGCCCCGGAGGTGGCACCAAGGGCAAGAAGAAGCGTcccagagggatggagaagggtgGGGTGCCTGGggcaggaggaggggggatgggagggaTGAACAAGCAGCAGTCGGGGTCCATGCAGCctcaccaccaccagcaccagcCCACCGAGGACGACTTCCACCGCGAGCTCTTCTCCATGGACGTGGACGCCTCCCAGAATCCCATCTTCGACGTCAACCTGCCCGGCGATGGCTTGGACACGCCCCACAGCATCACCCCGGCGCCCAGTCAGTGCGGGACCCCGCCTTCCGGGGCTGGAGTGTCCTACCACTCGCAGTCGCACGTCCAGTCCCAGCAACAGCAGCAACCACCTCCGGGTTCATCCTTGCCTCGCATGGTACGCCTATCGAGCTCCGACAGCATTGGCGCGGACATAAACGAGATCTTGTCGGACTTACCCGAGCAGACGGGTAAAGGCGGCAGCGGTTCGCACGGGCAGCACCACCTGGGCAGCGGGGAGGACGGGGGCCCCCTGGGCACCCCGCACCGGGACTCGTCCAGCTCGGGACAGGGCAGCGCCGTGTTCGAGGCGGACATCTTCAACACCAACAGCAATGAGAACCCCTTCACGAACGCCGCCGACCTGATCGCCGAGGCGACCGCCACCACCCCCACTAGCGACTCCTCGTCCACCAACTTCTTCCCCGACACGGTGGACTTCAACCCCGAGCTGCTGACCTCCAGCCACGGCTTCCCCCAGGCCTACTTCGACGACAGCTCACCCAGCGCCGATGGAGACCTGGACCTGGTCAAAGGCTTCGGTGGGAGCAGCCAGCAGAACACGCCGTCCGGCACCCCCCAGAATCCCACCCCGCACGGCCAGAGCACCCCCGACCCCTCCCTCAAGGACCCCTTCGACATTTCTGGCATAGTGTTCGGGGGCAGCAGCGGAGGGGGCAAGCCACTGCTGGGTCAGGCCCTGGATCTAGGGGACTCGCACTCGTCCCACATGGGGGGAGGCCAGAGCCCTCTCATGATGGCCATGGGAGGGGGGAGCAGTGACTTCAAGAGTGGCGAGGCCAAAGCcaaacagcagcagcagggaCTTATGAGGGCGAAGGATGACAATGGGGGCGGGAGTGGGCGCAGCTCAGGGATGGGGATGACTGGCAGCAGCTCCATTGAGGGGAAGCAGGTGAAGCGAAGCCGCACCCCTTCCAGCGAGGGCAAGTCCAAAGACAAGCCCCCCAAACGCAAAAAGCTTGATCCCGACGGGAAGTCcccatctcacagcacagggGGGCGACCCTACACCCCACCCAGCGGAGGCTCGGGATCTGGAGGCAGCATTGGCGGAGGATCCAAGTCTCCCGGTAGCTCCGGGCGGTCGCAAACTCCACCAGGAGGTGCCACACCACCTATCCCTAAGATCACCATTCAGATTCCCAAAGGAACACTGTCTGGTGGGAAAACCTCGTCCCATGGCGGGTACACCTCAAGCAGTTCGGCGGGTGGTGGCACGGGGGGTGCAGGCAGCACTAGCGGAAGCAAGAGCCATCATTCTCACTCCTCGTCTTCCTCAGGCAAGATCAAGAGTAAGGAGGGCACCCTGGGCCAAGGCATCAGCTCCAAGCCTGGGAGCGTGGGAGGGGGTGTTGGAGGTGGACCCCCCCAGATGAAGAGCTCTTCACAGGGAATGGGTGTGGGGAAGCCAGGCTCTTCTCCCATCACCAAACATGGACTCTCCGGGTCGGGAAGCAGTGGTGGCGGGGTTGGAAGTGGGAACAAGATGAAGCCGCAGGGGGGCAAGCCTCCCGGGTCCCTCATGAACCCCAACATCAAGCCCAACATTTCCCCCTCGCACTCTCGCCCCAGTGGCTCTGACAAGCTCTCTTCCACCATGAAGATGCAGCAGTCGCAAGTCCCAGGAACTCCGCCGTCCTCCAAGGCCAAGTCCCCCATGGGCTCAGGGGGCGGCGGCTTGGTAGGGTCCAAGTCATCCTCCGGTGGGGGGATGGGCTCCCAGAAGCAGCTGGGCGGTGGTGGTTCCTCTTCCGGCTCCTcgtcttccacctcctcctccagctcctcttcCTCTGGCTCCATGCCCTTTTCCGGAGGCTCCCAGTCTCAGTATGGCTCTAGTGGTGGCGGAGGGGGTGGTTGTGGTGGCGGACAAGGGAACAACGCGAACAACCCCAACGCCAAAGGAAAGTCCCCCAGCCGCAACAAGAAGCCCTCGCTGACTGCAGTCATAGACAAGCTGAAGAGCGTCGGCGGGGGAGGGGGTCCTGAAGACGAGGGAGATCCGCCTGTTGGTGGCAGTGGTGGGACTGGTGTAGGCGGACCAGGGGGCGGGCCACCAAACCTCGGCCCCTCCAAGCACGGAATGTCCTCTCAAGGCGGGGAGTACCCGATCAAACGAGAAAAGTCTGAGAAAGAGGGCAAGTCCAAAGTGTCCGTGTCGGTGGGTGCCAGCGGGGACAAGAAGCTCATAGATCCCAAAAGTGGAGGCGTAAGCAGCACGGGCGTGGCCAAGATCATTATCAGCAAGCCGGACGGCGGCTCACCCAGCATCAAGGCCAAGGTGACCCTGCAGAAGCCCGGAGAGGGCTCGGGGGAATCCATGCGCCCCCAGCTTTCCGGTCTCAAAGCCTCACCCCTGTTCAGCGGCTCCACGCCCAAGCACGACCGCTCTTCCCCCAGCCACAGCCGCTCGCCGGGCTACACACCGCTCAACCACGACAGCGAGAGCGAGTCAGGCAGCAGCTCTGTGGCAGAGAAGTCCCACCAGAACAGCCCTAGCTCGGACGACGACCAGTCCATGAGGCCCGTGCCCCCGCAGGACTACATGAGCTCCATGCCCCTCAGCTCAGGGGAGAAGCACAAGAAGcacaagaaggagaagaagaagcagaaggagAGGGAACGCGAGAGggacaaagatagagagagggagaagaagaagtcGTCGTCTATGTCAACTGGGAACGTTTCGCACGGTCCCATGAAGGCTGACAGCTGGTCGCGGTCACCCATTTTGGCCTCGGATACGTCTCTCTCTATGATGGGCTCGGACCGTCCCTCCCGCCCCAGTCCTGTCTACATGCGGAATGAGGACGATGACCTCATGGACTCGGCCCTCACTGGCAACCTATAACCCTTTCAATAGACACACATTTGATTTGGATTTTAAAGGCCAGCCTGTAACTTTCATTTCCAATCAAAAGTCACGCCCCTGGGGGTTTAAAGAGAGAGACCAATAATGtgaaggttgctggttcaaatcccgggCCAGGCAATGAAAAGTGGGAGATTAGCATACAGATTGCTGTACAGATTCCAGGTGTACCATCTTCTGCCTGTTGTGCCCTTGTGCAAGCAAGGCCCTTTATCCATAAATAGCACGAGTATTGCTAGTGGCAGCACTTTTGACATGAAATGAGAACTTACAGAATGTGCCTTTTCATAATCTTGACTGCAACTCTTCCCTTGGTGTCCATGCCATATTTGCAAAGACTGGCAGCACTCTAGCAGTAGGCCATTTATCAAGCAGATCTTTGAAACGCGGTCTGAAGCTCTACCAGTGTACCCGTTTTCTTTTTTAACGTGTGTCTTTTTTTTACGTATCAGTATATGTCCAAGAATGACAAATACAGCAGGATTCAACTTTGAAATCCAAGTGTGTTCTACAGCCATATTGTTACCTCGACCTAGACATGGAGATGCCATTTTCTACTGTGATGTGGGTGGAGGGTGAGGCATTTTggaattaaagggatagttcacccatcACCAcctaatttgggtgaactatcccttttaaGAAAGTCCACACGTACCCAACGACACATGGTATCTGTTTCAGTCTGCTCGGCAGAGTCTGTACGGTTTATTTGAGCTACGATGTTGGTTGTATTTTAAGTTAAAATATCTTTTAGATTCATTATTTACTCTAGCGGCACCAAACATAGAAGATTGCGGCTCTGTTTTTGATTGGGGGGGGGTTAAAAAGAGTTAAGACTATGTAGCATTGCACCATgtttaaaaatagaaaataacaacatgtaaaaaaatatatatattttaaatattttgtttttacaAAGTATCATTCGGCAAGGGTTGTAACATCTTATTGTGTGTTTAAATGCCTTAAATGTGTATTCAGAATATTGTGAATTTTAGATTTTGATACCTCTTTTAACATGTAATGGGCAGGTGAGTGTTGAGATGTAGAACATTTTTTTGCAGAGAAGTTTGGCAAgcttaaaataaatatttaaacgCTAAA

Function

GO: NA

KEGG:

id description
K15144 MED1; mediator of RNA polymerase II transcription subunit 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1548134 lncRNA upstream 13462 23827902 ~ 23916365 (+) True G1354281
TU1548154 lncRNA upstream 60019 23867932 ~ 23869808 (+) True G1354301
TU1548139 lncRNA upstream 70217 23834859 ~ 23859610 (+) True G1354286
TU1548013 lncRNA upstream 73379 23851323 ~ 23856448 (+) True G1354172
TU1548009 lncRNA upstream 145717 23782449 ~ 23784110 (+) True G1354168
TU1548545 lncRNA downstream 39235 23991925 ~ 23992720 (+) True G1354667
TU1548547 lncRNA downstream 40193 23992883 ~ 23993194 (+) True G1354669
TU1548551 lncRNA downstream 50753 24003443 ~ 24003684 (+) True G1354673
TU1548580 lncRNA downstream 94129 24046819 ~ 24047201 (+) True G1354697
TU1548585 lncRNA downstream 100098 24052788 ~ 24053126 (+) True G1354702
XM_021565304.2 mRNA upstream 28445 23897621 ~ 23901382 (+) True neurod2
trnaw-cca-55 mRNA upstream 244078 23685678 ~ 23685749 (+) True trnaw-cca-55
trnaw-cca-54 mRNA upstream 245310 23684446 ~ 23684517 (+) True trnaw-cca-54
trnaw-cca-53 mRNA upstream 248450 23681306 ~ 23681377 (+) True trnaw-cca-53
trnaw-cca-52 mRNA upstream 249527 23680229 ~ 23680300 (+) True trnaw-cca-52
XM_021565307.2 mRNA downstream 149389 24102079 ~ 24147369 (+) False gpam
XM_036946572.1 mRNA downstream 149407 24102097 ~ 24147369 (+) True gpam
XM_036946577.1 mRNA downstream 213500 24166190 ~ 24201252 (+) False LOC110491683
XM_036946576.1 mRNA downstream 213501 24166191 ~ 24201252 (+) False LOC110491683
XR_005036482.1 mRNA downstream 213501 24166191 ~ 24201252 (+) False LOC110491683
TU1547936 other upstream 441215 23480089 ~ 23488612 (+) True LOC110491671
TU1547458 other upstream 631074 23298457 ~ 23298753 (+) True G1353660
TU1547339 other upstream 803516 23123859 ~ 23126311 (+) False LOC110491658
TU1547300 other upstream 883943 23045269 ~ 23045884 (+) True G1353519
TU1546739 other upstream 1297522 22631879 ~ 22632305 (+) True G1353021
TU1548546 other downstream 40928 23993618 ~ 23995021 (+) True G1354668
TU1548560 other downstream 133018 24085708 ~ 24090034 (+) True G1354681
TU1549199 other downstream 717749 24670439 ~ 24680719 (+) False LOC110491698
TU1549194 other downstream 717909 24670599 ~ 24681115 (+) True LOC110491698
TU1549200 other downstream 728724 24681414 ~ 24683919 (+) False G1355273

Expression Profile