RNA id: XM_021565307.2


Basic Information

Item Value
RNA id XM_021565307.2
length 6573
RNA type mRNA
GC content 0.47
exon number 21
gene id gpam
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 24102079 ~ 24147369 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGATTAATTTTCTCcaattggaaacgacaggctctgGTCTATCTTTAAAAAAATCTTTGGTGATAGTCTGCCATTAACTCTCGAAGAAGAACATTGCGCCAACGGGGGTATATTCACAAGACATGGTGGTGCAGCTAGAGGTCGTATACAAGATTCCTAGCTGGTGTGTGATATAAAGGGAGGAGATGGAAGTGGCCGTCACGATTGGGCCAGACAGCCTGCTCCAGGTCAATGGAGCCGACCAGGGAGGCAGCCGCTGGAAGCAGCCTAACGATGACTCAGACCGCAGTTCCAGTCCGTCTGTCCTGCGCTGTGTGACCAGCACGTGGAAGGAGGGCTTGCTGAACAGAAAGAGGCCATTCGTGGGCCGCTGCTGCCATTCTTGCACACCGCAAAGTCAGGCGAGACTCTTCAACTCGAGCATTCCTTCTCTAGGACTGCGCAACGTGATTTACATCAACGAGACACACACCAGACACCGTGGCTGGCTGGCCCGCAGGCTCAGCTATGTGCTGTTTGTTCTGGAGAGGGACGTCCAGAAGGACATGTTCGCTCGCAACGTGGTGGACAATGTACTCAACAACAGCAGGGTGGAGAGTGCAATTGTGGAGGTGGCCACTGAGTTGGATCCTGCGGCCACCGAGGCTGGGGTGGAACATAAAGCGGTCAGCAAGGTGAGGCGGAAAGCCAGAGGGTTCCTGCAAGAGATGGTGGCCAACATCTCACCAGCCTTCATCAGGCTGACGGGATGGGCTCTTCTCAAGCTCTTCAATGGCTTCTTCTGGAGCATCCAGATCCACAAAGGCCAGCTGGAGATGGTGAAGAAAGCTGCTACGGAGTACAACGCTCCCCTTGTCTTCCTGCCCGTGCACAAGTCTCACATCGACTACCTGCTCATCACCTTTATCCTCTTCTGCCACAACATCAAGGCCCCCCACATCGCCGCCGGCAACAACCTCAACATCCCCATATTCAGCACATTGATACGTAAACTGGGAGGATTCTTCATTCGGCGAAAACTCGACGAGACGCCAGACGGAAAGAAGGATGTCTTGTACAGATCTCTATTATATGTATACACAGAGGAGTTGCTGAGGCAGCAGCAGTTCCTGGAGGTCTTCCTGGAGGGAACGCGCTCTCGCAGCGGCAAGCCCTCCCCGGCACGCGCCGGCATGCTCTCCATCGTCGTGGACGCGCTGTGCAACGGCGTCATCCCCGAAGTGATGGTGGTGCCTGTGGGCATCTCCTATGACCGCATCCTCGAGGGCAACTACAACAGTGAGCAGCTGGGGAAGCCGAAGAAGAATGAGAGTCTGTGGGGTGTCGCGTGCGGAGTGTTACGGATGCTGCGGAAGAACTACGGCTGTGTGAGAGTGGACTTCACCCAGCCGTTCTCTCTGAAAGAGTACCTGGACACACAAAGAAGTCGGCATattccccccaccctctccctggAACAGACCTTGGTGCCCACCATCATCGATGCACAGCCAGATCAGGCCCAGTTTGAGGGCGAGCAGGAGGAGCAGCCCAACTCCAGGGACCTGTCGGACGAACCCTGGAGAAGACAGGTCATCGCCAACCTGGCCAAGCACGTACTCTTCAcgGCTAACAAGTCCTCAGCGGTCATGTCcacccacattgtagcctgtctGCTCCtttacagacacagacagGGGGTTGCGCTGTCCAAGCTGGTGGAGGACTTCTTCAACATGAAGGAGGAGATCCTGTCACGGGACTTTGACCTGGGCTTCTCCGGCAACTCCGAGGACGTGGTCATGCACGCTCTCCACCTCCTGGACAACTGTGTGCACGTGACCAGCACCAACCGCAACACGGAGTTCACCATCGCCCCGAGCAAAACGGTGCCGGCGCTGTTCGAGCTCAACTTCTACAGCAACGGCCTCTTCCATGTCTTTATCTCGGACGCCATCATAGCATGCAGTGCTCTGGCATTGCTACGGGAACAGGCGGCATCTGAGGTGGAGGGGGAGCAGGGCGGGCCCAGCATCCTCCTCAGTCAGGAGAGACTGATCCGGAAGGCCGCTGGCCTCTCCCACTTCCTCACCAATGAAGTGGCGGTTGCACCGccctgtCAGACCATCTATCAGGTGTTCCACGATGCTGTCAGCCGTTTGATCCAGTATGGAGTTCTGTATGTGGCTGAGGAGGACCAGGAGGAGCTGACCCCCAGCCCCACCGAGGAGCCATGGCCTAAGAAGTTCCCTGAGCCCCTGTCGTGGAGGAGTGATGAGGAGGACGAGGACAGCGACTTTGCAGAGGAGCAGAGGGACCGCTACCTCAAAGTGAGCCTGTCCCCCGAGCACCAGGAGTTCTTTGTCTTCCTGCAGCGTCTCCTCAGCCCCGTACTGGAGGCCTACAGCGGGGCGGCCATCTTTGTCCACAGCCTGAGCCAGCCCATGGCCGAGCCCGAGTACACGCAGCAGCTCTTCCGATACCTGCTCACACGCACTGAGAAGGGAGTGGCCGCCTACGgTGAAAGTGCGACACACTACCTCGTGAAGAACACCGTGAGAACGTTTAAGGAACTTGGGGTCCTGAAGGAAAGGCGGGAGAACCATGTGTCATTGGTGGAGCTGAGCAGCACCTTCCTACCTCAGGCGAATCGGAACAAGCTCCTGCATTACATCCTGGGGTTCACCCTCCTGTGACCTACAACCTTCCCACCGAGCTCCACCCACCCTGTATCCCCTCCACAAGGGCTTTTACTGGCTAGTTCTAACCAATCAGAGGTGCTACTCTATGGAAAGCTTTACCAGGAAGTGCCTTTCGTGAAACCACTATTAGCCAGAAGAGACTTGAAATCAGTCTTCCTCCTCCAGTTGAGACCCTTCCACCTGTAGAACTGTGCAGCTAGattgaaaggaaaaaaaaaaacaaaacaaaactgtCCCTCATCTGACTCTATAATCGTTCTTCAGTGAAAGTCAGTTTTTAATTGGATTGGTCTTTTAACTATAGGAATACGGATTCATTAACTGTAGGAATACTTACTCATATTCGTTGGACTAATCATATTGTTTTTCTCTCAGTCCTGTAAATGAATGTCATCTTtacaaacacaaaaaaacaacgcctttggtgtaaaaaaaaaataaaaatagaggTTATGGGCATTTTTTTGCACCAGAATGCATGTAGAAAATTTGCTCATTGCTAGGCCCCTATCCATACGTTAAACTGAAACCACATATTAGAAACGGACATAATGAAGactatttaataataataataataataaaaaaagcaTGCAAGTCGAACTCACTATGTACAAGTGTTACTCATCTCAAGTTTAGTCCATGGGCAGATCTACAGTGAGCAGGCAGCCCATGGTTCTGTAGACCTCTAAAGACATTAACCTCGTGTGttgttatttttctatgttgtatgAACGAAAGGGCATTCTGGTGCAACCCACCACATGAAACGTGCCCTTTGTGCTACCTTGAAGATGGGCCACTCGCTTTGATGTCTGACAATCGGCAGACTCGTCGCGCTACCTTTTTTTTCTGACTGAATTGGCAACTGTGGCTCAGATTCCAAGGCACTTGCCGCTGTTAAAACATGAATTCCTGGTGTTAAAACCTAGTTGTATGATTTCCATAGCCATTTGGAACAGCAATGTAGCTAGATGTAAAACCCTAACAAAATGTTTTACATCTGCCGAAATGGAATTATAATTTCTCAATGTGTAACTAAAGCAGAGAGCTGAGATGAACAAATATTAATTGCTgcacaatatttaaaaaaatatatttaaaaaaaatactcttcCCGAGAGTCATGAAGCATTACGATACCTTGCAAAATCCAGCACTTCCTCTTCATGCACGAGAGTATGTAGTATAGTTTAGGTATTAAAACTGTAGTCCCACGGAGGTTACAGTACAGCCAAGTAGGTCATTGCAGTGCTGGCACCCTTTTTAcaaaatgattcaaatgtaataacTGATTATAGTGTTGCTAAAACAACACGCGTTTGTATATTACTAAATGTACTTGGAAGCCTTAAATACCATACAAGGCTCTTGCAATGTATACTTTGACTTTGTCGTGAATCATTTTTGGGtacggggggtggggggggggtccgATTTGTGCGTTTACCCAACATCTACATGAATGTTCAGCATCAGAGAACATAAACTTCCTCAAACCTGGCATACGAGTTACATAAGGCATAAGATCAGCATAGCAAGCCTCTTATTTTCCATGAACTTATCTATGGTCTCCCGCTTTATCTTCCTTGTAGTGGGTGGGATGGGAAACTACTCTGTCAATTTTACGTGTTCTTACTCGTAAAGAACGTACTGTAGATTCACTTTACTTAGGGCAACTTGGTTACTCACATGGTTGCCTCCACGCACAACTTCCAGACACGGTTCTGTCGTTAGCCTAGTCACAGGAGGACCTTTTTGGTTATGAACAGTAAATACCTGACGAATGTGTAATTCGGTTCATCAAACAAGCTAACTGGTCCTCCTGAAGATGGGAGGTattgacttgtgtgtgtgtgtgccctataGCTAGCTTTGCACGCTGGAATAGGTTATTTTTAGTCACTTAGAGGAAAAGATCTGTCTCCCTTTTTTTCCTTTTTAGCCTCACGTAAAGCCGCAAAGCTTTAGCTAGTTAGGATAGAGGGACTATTGATGTACCAACTCCATTTCTCCTGGTTGTCTTTGGTATGGAGCGTGACCCTAATAATCCATCAGCTGCACGGCTTGTCCTTTTACAAGTGTGTTGAACCTTCTCGTTGTGGACTAGCCTCTCTGGCTGGGTAATGGGGCCCTGTTCTTAAGACTTTTAGAAATGCATCCCTCCTGTCTTTAACATCTCTGATCTGTGAAAGCAAGGtttctactgtactgttactcTGTCTGATCCATCCCTTGccaaggaaggaaagaaggaatgaTTCCTGTTCTAGATGTATATGAACAGGGCCCAACTCCCTGTCTGGTAATATTGAGTCTCTGAGGTGTTGGGGTCGTTCATGCCGATGTGCAGCACAAGCTAGTTTGAAAATGAAGGtttgaggtaatgggagcagagGGAAAGCCAATGAAAGTGTAAGGGATGGCTGTGATGACACAAGTGTTGAAAAAGATGAACTAGAGGGATGACAAAACAGAACGTCTCAAGACCAGTCTCGTTTACACTTGCTACCAATTTTTGATTTGAAGAAATATACTAATTTGGTGTTGTAGGGTGTTAAGGTGGAGAAATATGGGTTTGTGTATAATCCCTATTGTGGTATTATTTATTAATTTGGCAATCATGGTCTGCAAAGGCACGTTGATATGTAACGCATCAAAATGAGTTTCAATGCATTAAGCTTAGCTTGAGTCAATGTCAAATTGTAGCAGATTCCATTTCCTTGTATTTATAGTGTAAAACTGCTTAGATTAAACACTGGAACTCTGCGTTGGTGTCggtttttttaaaatgttggcGCTGAATCTGAATGCAACTCTGCATTATGATATGGACTGTCATTTTCCATTTGAATTGCACATCTTTAGTATTCATTAGGACAGAGTTGACACCATTGAATAGCAGAGGCTCGCAAGGGGAGTTGAATGAGCACCGAGTATCAAATCCTCATTTTGAAACTTGGTGTTGCCAGGGCCTGGATGTTTCttttgggaaccacacatggggaAATACACTTTGGTTGCAACTTGTTTTGCTAGGTGCCACACGGTACCTATTGAATGGGGACACCGGTGTGCAGTACACACTATAAGAACACAATCACAGCTAACGATCTACTCTCTTGGTACAGACTGTCGCTCCGAGAGCCCAGTATTTAAAGCAATAATAAACCCAGATTCTGTAAATTACTCAAACTCACCCCTGTGGCACGCCCGAGTCGAGACGAGGCTTTGTGCTTGTATCCGCTGGTCGCCATCAATTTCATAGGTACCTAAATGTGAACTCTATACTTAACCTGAGAAATgtagactagtgtgtgtgtgaatactttatTTGAAGAGAATGATAGTAGTTTGAGTAGGAAACCAAGTTGGGTTTGTTACTTCTGTATCTTACCTCCCCCCCCCACTAGTTGATGTGTTAATTGTAAGACTCTCGATCGATCAGCGCACAAACATGTTTAGTTTTGGCACATCTGGATGGTGGTTGAATCATGTCACTAATGTGGGCAACATGTTGATGCCAAAAGGATGCATACAAACAACGTTAACCTGTTGTAGACAATAAACCTTAACTGTATTCTTTGAGCATGATGCCTTTTAATACACTGTagagttttttgttttgttttttggtgTATTTTGTGCATGTTAGCTGAGGCCCATGTAGCATGGCCACTAAAAGAACTCACCGTAAGAGTAGTAACTCgtttaaaaaaagaaagtaaTTCATTTTCTTACACGAACACAAGTTTACCATAGTCACCAGCTACTAAAAAACAAATGTCACTCTTTATGTTCCTGCTTCCATAGAACAAAAACAATATTCAAGCACAGTTGTcagcacatttttttttgttttgtttttaaataaattaatgaTTAACAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1548616 lncRNA upstream 1190 24100666 ~ 24100889 (+) True G1354733
TU1548612 lncRNA upstream 8082 24093550 ~ 24093997 (+) True G1354729
TU1548594 lncRNA upstream 39883 24061993 ~ 24062196 (+) True G1354711
TU1548591 lncRNA upstream 43736 24058074 ~ 24058343 (+) True G1354708
TU1548585 lncRNA upstream 48953 24052788 ~ 24053126 (+) True G1354702
TU1548653 lncRNA downstream 28850 24176219 ~ 24176797 (+) True G1354769
TU1548657 lncRNA downstream 39896 24187265 ~ 24208476 (+) True G1354772
TU1548665 lncRNA downstream 95177 24242546 ~ 24242989 (+) False kcnh4b
TU1548681 lncRNA downstream 99771 24247140 ~ 24247407 (+) True G1354796
TU1548697 lncRNA downstream 124721 24272090 ~ 24272358 (+) True G1354812
XM_021565305.2 mRNA upstream 149389 23929827 ~ 23952690 (+) True med1
XM_021565304.2 mRNA upstream 200697 23897621 ~ 23901382 (+) True neurod2
trnaw-cca-55 mRNA upstream 416330 23685678 ~ 23685749 (+) True trnaw-cca-55
trnaw-cca-54 mRNA upstream 417562 23684446 ~ 23684517 (+) True trnaw-cca-54
trnaw-cca-53 mRNA upstream 420702 23681306 ~ 23681377 (+) True trnaw-cca-53
XM_036946577.1 mRNA downstream 18821 24166190 ~ 24201252 (+) False LOC110491683
XM_036946576.1 mRNA downstream 18822 24166191 ~ 24201252 (+) False LOC110491683
XR_005036482.1 mRNA downstream 18822 24166191 ~ 24201252 (+) False LOC110491683
XM_036946578.1 mRNA downstream 18824 24166193 ~ 24201252 (+) True LOC110491683
XM_021565314.2 mRNA downstream 64810 24212179 ~ 24234669 (+) False ghdc
TU1548560 other upstream 12045 24085708 ~ 24090034 (+) True G1354681
TU1548546 other upstream 107058 23993618 ~ 23995021 (+) True G1354668
TU1547936 other upstream 613467 23480089 ~ 23488612 (+) True LOC110491671
TU1547458 other upstream 803326 23298457 ~ 23298753 (+) True G1353660
TU1547339 other upstream 975768 23123859 ~ 23126311 (+) False LOC110491658
TU1549199 other downstream 523070 24670439 ~ 24680719 (+) False LOC110491698
TU1549194 other downstream 523230 24670599 ~ 24681115 (+) True LOC110491698
TU1549200 other downstream 534045 24681414 ~ 24683919 (+) False G1355273
TU1549230 other downstream 617270 24764639 ~ 24783512 (+) True dcakd
TU1550905 other downstream 1929172 26076541 ~ 26089383 (+) True znf281b

Expression Profile