RNA id: XM_036946576.1


Basic Information

Item Value
RNA id XM_036946576.1
length 5028
RNA type mRNA
GC content 0.49
exon number 19
gene id LOC110491683
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 24166190 ~ 24201252 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGCTGAAGCCGGACCAATAATAAAAAGAGAACAAAGAATTGTCTCCGTTTTATTGGACTAGAGCGGAAATACATTACATTTATGCCCCCACCCGTACCAATGTCTTTAGGGTCTACATTGTAGTTGGTGTTACACTTGCATGGCTTTGTATTAACTAGCTTATATAAATAACGTTAGCATATTTTAGCTAGCTATAAGACGGAGGAGGTAGCGCTGCTATAACCAAAACGAGCATTCTCCCCGGAAGTGGGTGGTGCATGCAAATAGTTTTATGCTaacgttagttagttagctatatGGTAGCAGCAACAGCTGGTTGCTAGTTGATTTTCTTGCCAAGCAAATTAAAAACTGGCCATTACGATACCGGTAATGGTTCGATATGACAAACCGCAACATTCtgggtaacattagctagctagggaACGTTAAACACAAAACGTTTTGAAGGGCTTAGTTTTGGTGTTTCCTGTGCCCTATGATCTAAATCAGATTTGCTGTCTGGATATAGGGGCTGAAGGAGGATGGCGGTGTGGATCCAGGCCCAGCAGTTGCAGGGGGATGCGCTGCACCAGATGCAGTCTCTCTACGGACAGCACTTCCCCATCGAGGTGCGTCACTACCTGGCCCAGTGGATCGAGGGGCAGCTCTGGGATTCTGTGGAGCTGGAGAACCCCCAGGATGAGCTGAAGGCCAAGCGTCTGCTGGACAGCCTGGTGCAGGAGCTGCAGAGGAAGGCCGAGCACCAAGTGGGGGAGGACGGCTTCCTGCTCAAGATCAAACTGGGACACTACGCCAGCCAGCTCAAGAGCACGTATGACCGCTGTCCCCTTGAGCTGGTGCGCTGCATCAAGCATATCCTTCACTCGGAGCAGAGGCTTGTGCAGGAGGCCAACAACGCCGTCGGGAGTGGCGGTGGGGGTGGGACCATGGACAGCCTGTCCCAGAGGCACCAGCAGATCAACCAGACGTTTGAGGAGCTGCGCGTGTCCACGCAGGAGACTGAGAACGAGCTGCGCAAGCTGCAGCACAACCAGGAGTATTTCATCATCCAGTACCAGGAGAACCTGCGCATCCAGGCCCAGTTGAGCAGTCTGTCAGCCGTGCCGGCAGAAGAGCGAACCCAGAGGGAGACCAGCCTGCAGGCCAAGAGAGCCACCGTGGAGGCTTGGCTCACCAGGGAGGCCAACACACTGCAGAAATACAGACTGgacctGGCGGAGAAGCACCAGAAGACTCTGGGCCAGCTGAGGAAGCAGCAGACGCTGATCCTGGATGAGGAGCTGATCCAGTGGAAGAGACGTCAGCAGCTGGCCGGCAACGGGGGACCCACCGAGGGGGGACTGGATGTCTTGCAGTCCTGGTGTGAAAAGCTAGCGGACCTGATCTGGCAGAACCGGCAGCAGATCCGGCGGGCCGAACACCTGACCCAGCAGCTACCTCTGCCTGGCCCAATGGAGGAGCTGCTCACCAAGCTCAACTCTGACATCACCGACATCATCTCCGCTCTCGTCACCAGTACGTTTATCATCGAGAAGCAGCCCCCCCAGGTGCTGAAGACCCAGACTAAGTTTGCGGCGACTGTGCGCCTACTGGTGGGCGGGAAGCTCAACGTGCACATGAACCCCCCGCAGGTCAAGGCAGTCATCGTCAGCGAGCAGcaggccaaggcccttctcaagAATGAGAGCACCCGCAATGACAGCAGTGGAGAAATTCTCAACAACAACTGTGTGATGGAATACCACCGAACCACAGGAACCCTGAGTGCTCACTTCAGGAACATGTCCCTGAAGCGGATCAAGCGGTCGGACCGTCGCGGGGCAGAGTCGGTCACAGAGGAGAAGTTCACTGTCATGTTTGAGTCTCAGTTCAGCGTGGGGGGCAACGAGCTGGTCTTCCACGTCAAGACATTATCTCTCCCCGTCGTGGTGATAGTTCACGGTAGTCAAGACAACAACGCCACGGCAACGGTCCTGTGGGACAATGCTTTTGCAGAGCCGgGCAGGGTGCCATTCGTCGTTCCTGACAAGGTGCTGTGGCCCCAGCTGTGTGAAGCCCTAGACATGAAATACAAGGCAGAGATGCACAGTGCCCGCGGCCTCTGCGACGACAACCTGGTCTTCCTGGCCCAGAAGGCATTCAGCAGCGCCAGCATAAACCCAGAAGACTACCGCAGCATGACCATGTCCTGGGCCCAGTTCAACCGGGAGAGCTTGCCAGGGAGGAACTTCACTTTCTGGCAGTGGTTTGACGGAGTCATGGAGCTCATGAAGAAACACCTGAAGCCCCACTGGAATGACGGGGCGATCTTGGGCTTTGTGAATAAACAGCAGGCCCAGGACATGCTGATGTCCAAGCCCAACGGGACCTTCCTGCTCCGCTTCAGTGACTCTGAGATCGGGGGCATCACCATCGCCTGGGTGGCAGAGAACCCTAACAAAGCggGGGAGAGGCTGGTGTGGAACCTCATGCCGTACACCACCAAAGACTTCTCCATCCGCTCACTAGCCGACCGCATCAGTGACCTCAACCACCTTATGTTCCTCTATCCCGACCGGCCCAAGGACGAGGTGTTCTCCAAGTACTACACCCCTCCCCTCTCAAAAGCAGTGGATGGCTACGTCAAACCACAGATCAAGCAGGTTGTGCCAGAATTCACTACTCCCAACCCTGAGCCGTCCAGTGGGAACCCCACCTATATGGACCAGGCACCCTCCCCGTCAGTGGCTCACCCCATCAACTTTGCAATTTTCCCTCCCATCAGAAGTGACCCCATGATGGACGCAGATGGAGAGTTTGACCTGGAAGACACCATGGATGTGGCCCGACACGTGGAGGAGCTTCTGCGGCGGCCCATGGCCAACCAGTGGGACGGCCAACAGTCCTGAACTTTCACCTTTGACCCCTGACCCTACACCCAACAAGAGCAAGCACCCAGAAAACATCCAATGGTTTTGGTCCCATTggtttatatttttttgtcaattctCAAAGGTGAAATGTAATATTTGACAGTTCTTGGATTATTTTCTGATCTTCTTGACGTGGCAATTGATTATTTAAAAGAAATAACTAATTGTACCTGAAGAAAAAGCACAGTTGAAAAGGTTTGTTTGGAAGTAAGTACTGAGAAAAATGTAGAAATGTGTGTTACTACAATATACAGCAATATTTTTACAAAAATGTTTAGCTATGCTGCTTATGGCCATCCTCTGAAAATGTTTAAAGAGCAGGAAGGCCTGCACACTGTTTTTATGCTCCCAATTCACAGCTTTATTGACAAGGTTTCGATCCGAACCGGATCTTTGTCAGGTCAAACAAATGGAGTGCTCACAACCCGAAAATGTACACGTTTCACCTCACATGACCATGACACATGGTGGGTGTGGAAACAATTCAATTAACTTTTACTCACAGTTAATCCGAGGTACATGTGGTCCTAAAGGATTATAGACATACAAATAGGGCTGAGTTAACCTaggcaacttttttttttttaaaggccttAGATCTAATTACAGTGTTCCTTTTCAAAAACCAACTTGTGTACCTCTAATAATTTAGATATCAATGAGATGGGCACGTGTAGTAGTCTTCGAAAATATAATATGTACAAAATGACCAACTGGAGACCTAGCCGTCAAGACAAATCAACGTAACATATTTATGTAAAAAATAGTCTCAAATTCTTCATTCATAGCTTTAGgagacagtacccccccccaccccccaagtAGCCTTAACATGTTCAATACCCGTGTATCTCAGAGAGCTGTTGTGACGAGCCTCTGTGAAACGTGCAGCCACAGTTTCTCTGATCAAGAGTCCTGATATTTCtcttgtgttctatgttttcacAGCTCGTTTTGTTTTTCCTTCATGGCATAGACCACAAATGCACTTGATCAGGTATACCATTTTAGTTTTTTGTATAACACGTGATACACTTAATCTTAATGGCCTTGCCTGTGATGGGTTGATTGAACGTTGTGCATTTGTTCTTAAAGTTACACTGGGTGCATCGGCCACATCTGTAATTACTGTCCGGCACGTTATCTAGGAAGGTGTTACGTGGCATCGGTGGGAAGGGATGGTTTGGGAGTGAGGCCAGGTCATGTTTTTCTAACGGTCCCGTGCGTCATACACCCAATCCTCTGGTAACGGTAagggcaggaagcctagtggttagagcgttgagccagtaaccaaaaggttgctagattgaatctccccgccgacaaggtaaaaatctctcGTTCTACCCCTgagaaaggcagttaacccactgttccccgagcTCCGAAGACCTGGATGTTGATTtaagtgtgatttttttttttaaatgcgggagacgcatttcagttgaatgcattcagttgtacaactaggtatcccctttccctgttTGGAGCGTTCGTCCAGACAGTGCAATTGATTGTACTTACAGATCCTGCTTATACAACTGTATTGGGTGATAGGGAGGCTCTTTTTCAGGGAAAGGTACTTTTACTCTTCAGGTTGGTATCGTCAAAGAGGCGCTATAGTCAAAGTACACCGCATTTCTTTAAATGCTCAGTGCTGTATTTGTTTCTAAAGGTTTGGAATGTAACTATGAAATGATTTGAGTCTTGCGTCTGTCTCTGCACCGTTAAATTCAAAATCAACATAACAAAATTACCATTCAGAATGAATTACGTTTGAAGTAGATTCCACCGTTGATTATTGAAATACGATAGTACAGTATTTTGACCCTTTGCATCCTCAAAATGGGGCCCTTGGTTTGAACCGCCATGTGCTGTGTACATTCTGCCTCACATTACATGcgtaatacatgtacagtatctTCTGCCTTTGAATGTCAAGTTTACTAGCCTTAATTCAAACTCCTCTTGCTTCTTATTACACTGAACTAGTTTCACTTAGTGTATCAGTTTATTTTTCTAAACAAATGAACTATTAACTAGTAACTTAACTATTGAATTGCTACTCAAATTCATCAGACTACATTATAAACTCAGCGATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1548616 lncRNA upstream 65302 24100666 ~ 24100889 (+) True G1354733
TU1548612 lncRNA upstream 72194 24093550 ~ 24093997 (+) True G1354729
TU1548594 lncRNA upstream 103995 24061993 ~ 24062196 (+) True G1354711
TU1548591 lncRNA upstream 107848 24058074 ~ 24058343 (+) True G1354708
TU1548585 lncRNA upstream 113065 24052788 ~ 24053126 (+) True G1354702
TU1548665 lncRNA downstream 41294 24242546 ~ 24242989 (+) False kcnh4b
TU1548681 lncRNA downstream 45888 24247140 ~ 24247407 (+) True G1354796
TU1548697 lncRNA downstream 70838 24272090 ~ 24272358 (+) True G1354812
TU1548705 lncRNA downstream 80026 24281278 ~ 24281501 (+) True G1354818
TU1548706 lncRNA downstream 80559 24281811 ~ 24282038 (+) True G1354819
XM_021565307.2 mRNA upstream 18822 24102079 ~ 24147369 (+) False gpam
XM_036946572.1 mRNA upstream 18822 24102097 ~ 24147369 (+) True gpam
XM_021565305.2 mRNA upstream 213501 23929827 ~ 23952690 (+) True med1
XM_021565304.2 mRNA upstream 264809 23897621 ~ 23901382 (+) True neurod2
trnaw-cca-55 mRNA upstream 480442 23685678 ~ 23685749 (+) True trnaw-cca-55
XM_021565314.2 mRNA downstream 10927 24212179 ~ 24234669 (+) False ghdc
XM_021565315.2 mRNA downstream 10992 24212244 ~ 24234669 (+) False ghdc
XM_036946579.1 mRNA downstream 11060 24212312 ~ 24234669 (+) False ghdc
XM_021565313.2 mRNA downstream 11359 24212611 ~ 24234669 (+) True ghdc
XM_021565316.2 mRNA downstream 41288 24242540 ~ 24311996 (+) False kcnh4b
TU1548560 other upstream 76157 24085708 ~ 24090034 (+) True G1354681
TU1548546 other upstream 171170 23993618 ~ 23995021 (+) True G1354668
TU1547936 other upstream 677579 23480089 ~ 23488612 (+) True LOC110491671
TU1547458 other upstream 867438 23298457 ~ 23298753 (+) True G1353660
TU1547339 other upstream 1039880 23123859 ~ 23126311 (+) False LOC110491658
TU1549199 other downstream 469187 24670439 ~ 24680719 (+) False LOC110491698
TU1549194 other downstream 469347 24670599 ~ 24681115 (+) True LOC110491698
TU1549200 other downstream 480162 24681414 ~ 24683919 (+) False G1355273
TU1549230 other downstream 563387 24764639 ~ 24783512 (+) True dcakd
TU1550905 other downstream 1875289 26076541 ~ 26089383 (+) True znf281b

Expression Profile