RNA id: XM_021565316.2


Basic Information

Item Value
RNA id XM_021565316.2
length 7259
RNA type mRNA
GC content 0.51
exon number 16
gene id kcnh4b
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 24242540 ~ 24311996 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caaGGGAGGGAcacacaaagaaagagagaggtagaaagatgCCTTGCCGTGTTGTGGATTCTCTCTCCCGTGGTAAGCAGAAGCCACATTGGACTGAACAGGAAGACTTAGGCTACAACTTCTGGACTGGTGCTTGGGAGAGGGCGAGCAGCAGCACCTGATGAGACGCACCGGAGCAAGTACAGCAGATCTCTTTTGGATCTCGACAACACCTGAACATCCAACCTGATCCCTTTTCTGATCTACCGTTCTACGTACCTTTGCTGCTCACTAAAAGCGCCAGGACCCGGCTGAACTTCTACACTGATTCTGATCACCGACTCCACCCTAAGACCAGAGTGGAGGGACCCAACTGGGACTCTGCGTGAATGGACTCCACCACGGTGGCCTCTTTTAGATGTGCTTCTCTCCCCTCGCTATACTGCCGGACTGGCCCCGCACCCACCTGTGCTCCCTGAGAGGCCTCagcggaccccccccccctcccaccaccaccctgGTGCCTCTGGGATGGTGTGATCATTGCGGGACCCATTGCTGACCTTAGATCAGGGCCAACATGCCAGTGATGAAGGGCCTCCTGGCCCCCCAGAATACCTTTCTGGACACCATCGCCACCCGCTTCGATGGCACCCACAGCAACTTCCTGCTGGGCAACGCGCAGGGCCACCGCGGCTACCCAATCGTCTACTGCTCGGACGGCTTCTGCGAGCTGACGGGCTTCGCGCGCACCGAGGTGATGCAGAAGAAGTGCAGCTGCCGCTTCCTGTACGGCCACGACACCAGCGAGCACGTGGCCCAGCAGATGGAGAAGGCCCTGGAGGGACGAGAGGAGTTCCAGACTGAGGTCCACTTCTACAAGAAGAATGGGACCTCTTTCTGGTGCCTACTGGACGTTGTGCCCATAAAGAACGAGAAGGGGGAGATGGTCCTATTCCTCTTCTCGTTCAAGGACATCACTGACACACACGGCAAAGTGCATCACAAGAAAGAAGAGGATAAGAGGCGGAGCAGGAAGAGTGGCAGCTCTCACTTCAGCGAAGCCAGGAAGCGGGGGCGGACCATGATCTACCATCTGACCAGCCAGTTCTCCAGAGGCGGCAAGAGAGAGGTCAACCTGGGCAGTAACATGTTTGAGAAGCCCTCGTCCCTCCCGGAGTATAAGGTAGCGGCGGTCCAGAAGTCCCGCTTCATCCTGCTTCACTACAGCGTATCCAAGGCATTATGGGACTGGATGATCCTCCTTGCCACCTTCTATGTGGCGGTCACCGTGCCCTACAACGTCTGCTTCACGCCTTACGACGAGCTGGACACGGCCGCCCGCGCCACCATCGTCAGTGACATCGCCGTGGAGATGCTCTTCATCCTGGACATCATCCTGAACTTCCGAACATCCTTTGTGAGCACGTCGGGTCAGGTGGTGTACGAGGCACGCTCCATTTGCATCCACTACGCCACCACCTGGTTCTTTGTCGACCTGGTGGCTGCACTGCCCTTTGACCTGCTCTATGCCTTCAACATCACCGTGACCTCCCTGGTCCACCTGCTGAAGACGGTTCGCTTACTGCGGCTGTTGAGGCTTCTCCAGAAGCTGGACCGTTACTCCCAGTACAGTGCCATGGTGCTCACCCTGCTCATGTCCATGTTTGCCCTGCTGGCCCACTGGATGGCCTGCATCTGGTACATCATCGGACGCAAGGAGATGGAGAACAACGACCCTGACACCTGGGACATAGGTTGGCTCCATGAGCTGGGCAAGCGTTTGGAGACTCCATACGCCAACAGCACACTGGGCGGACCCTCAGTACGCAGCTCCTATATCGCTGCCCTCTACTTCACCCTCAGTAGCCTCACCAGCGTGGGCTTCGGCAATGTGTGTGCCAACACTGACGCTGAGAAGATCTTCTCTATCTGCACTATGCTCATAGGGGCCCTGATGCATGCGGTGGTATTTGGGAACGTGACGGCCATCATCCAGCGGATGTACTCGCGGCGCTCCCTCTACCACACGCGCATGAAGGACTTGAAGGACTTCATCAGGGTTCACCGTCTTCCCCAGCAGCTCAAACAGCGAATGCTGGAGTACTTCCAGACCACCTGGTCCGTTAACAATGGCATCGATGCCAACGAGCTCTTGCACGACTTCCCAGACGAGCTGCGGGCCGACATCGCCATGCACCTGAACAAGGACATCCTGCAGCTGCCCGTGTTCGAGGGGGCCAGCCGTGGCTGTCtgcgctcgctctccctccacaTCAAGACCTCGTTCTGCGCCCCTGGCGAGTACTTGATCCGGCAGGGCGACGCGCTCCACGCTAACTACTTTGTCTGCTCGGGTTCCCTGGAGGTGCTCAAGGACAGCATGGTGCTGGCCATCCTAGGGAAGGGGGATCTGATTGGCTCCGACCTGCCGGGGACGGATCACGTGATCAAGACTAATGCGGACGTGAAGGCGCTGACCTACTGCGACCTGCAGTACATCAGTGTGCGGGCTCTAAGGGAGGTGCTGGAGTTCTACCCGGAGTACGCCAGCCTGTTCACTGCAGATATCCTCCACAACCTCACATACAACCTGAGAGAAGGCAGCGAAGcagagGGCCTGACAAGGTTCTCAAGGTCGCCCAGGCTTCCACACAACCGCCGAGGTTCCACAGAGCACAAGCTCCCGTCCATCATTGAGACAAAAGGAGGTCTCCATGACGACTCAGATGAGTACTACCACCTATCACCAGCGTCCCGCACCCGCCGCGCAAACCTCCTCTTGCCCAGCCTGAGCAGCCCCGTGCGCCGCACCTCCCTGGGCAACCTGCTGGGTGACGAGCTAAGGCAGTTCAATGCCCTGCGGCGCTGCCGTTCGCCCAACCTGAGCCGGGGAGGCCTACCCCGGGGCCACAGCCTGTCTTCCCCACAGCCGCTGCCGAAAAAGGAGCACAGTGTCCCAGTGGCAGCCCCTGCTAGTCCCCCTACCTCAGGGGAGTTGGGGGCAGGGAGTCAGGGCCGCAAGCCCTCCAAGCTGCTGATTCCCACTGTCAGCTATTTTGTACCGCCGGACCTCAGTCCAAgGGTTGTCGACGGCATCGAGGACAATGGTCGCACGTTCCTCTTCAACATGGAGCACAGTGGGCCCAAGGCCAGCACCACGGGACGTCCCAGTGAAGATACGAGGCAGGTGAACGCCACTTTGCTTCTGGAGTCGGAAGAGGTTAGACAGAGCATCAGTCAGCTCAACCAgaagATGGGCAACTTGAACAACGAAGTGTCTCAGCTGACCAAGGACCTCCATCACATGATGCACCTTCTCCAGGCCCAGGTGGCTATGCACCACTACACagcctccctgtcctcctcctatCCCTACGCCGTCCAAATGGTCTCCAACCCCAACCCCACCGCCAGCACTGGCACAGCCTACAACCTGGCCCCCAGCAGCCTGCACCTCCATCAGGACCCTGGGAGCATGGAGgggggacacacggacacactccACCCTTGCTGGGGCTACAGTGAGGCTCCAGGGGGGAGCTGCCAGGCTAGGGCCACAGAGGGTGGACAGCCAGAGGACCACTACCAGACCCAACCTCAGTCTTCCAGCCCAGGGCCCCCTAGCTTCTACCATGTGACAGACTCGGCGGCCGTGCCAGGACCCTGCCGGGGATCTGGTAGAACCTCACCCCATCCCTGGACTGGCCCTTCCTTGCTTAGCATTAGCCCAACCTTACAGAGTGGTGGTAGCCCAGGCACGtctaccactgctgggcatgagGACTTTGGCGAGAGTCGCCCTGGCCTTGACACTAGCCCAGTTAGCATCAGCCAGTCCCAACCCAGCTTGTGTCTGCAGCCGCCTAGCAGCGGTTTGTACAGCTGTCTGCTGTCTAGTGCTCCCACGTCTACTCACAGCCTCCTGGATGCCTACCCCAGCACCTACCCGCACATCTACCTAGCCTCAGAACCCCTTTTACACCCTGCAAGGCCTACCCTGGGGGAACCTGCTGCAGTCCTGGGGCTTGACGGGGTTCCAAGCCATGACTTCCCCCAGCAATACACATCCACCTCCAGCCTCCTTGACGAGGACCTGCACAGTCTGTCTGTCCACTCCAGCCCTGGAACTGCCCACTCCTTCCCCAGGCCATCGTCCGTCTGTTCCCAGGACTCAGAGTCTCCTCCTAGGCAGGACAACTGCGCTCCTCCCCATATCCCCTTGGGAGACTCGGCAGCGGTGGGACACACCAGTCTGGAGTGCCTGCTGGGGAATGGGGGCTCCACGGAGAGCAGGGACAGCGAGAGCCCCGGGACCAGGTCGAGGAGATCCAGCCTGGGAGCTCAGACTCAGTGCACAGAGCAGTCCTGGTGCCTGGACCTGACGGACTAGTGCCCTTTCCACACAAGAGAGAATAAAATATCTGGGCCAGCACACTAGGGTCCGCGCTGGCACGGTAGTGTGAAAAGATTACGCTTGGCCCTACATTTGGCCCCAACAACTCAACCCCAACCACCATCACGGGGAACTAAAAACTGGACAGGGAACTGAATCTTTACAAAGACAAGAAAAGTGGACATGTTACAGAGCATTATAGGGACTGTACATTGTGCAACACTATGGACGTGCACTTTTGAGTGTTCTTAACGTGTGGCGTGTTTTCCcccatttttttttgggggggggggggatcacttGTTAGTCTGCgttcaagcgacttacagcttttACTATGCAAACGCATGTCATTTTGTGCGTTGTCTTGGATTTGATCAAGTGTGTCCTTTTTTAGACGTAGCTCATTTTTGAGGAGTTTCTCTCTTTCGATTGGAAGATCAACCTGAAAATGTGTATTATTGAAGTTGAAATCCCGTTCGAGGTTAGAAGTGATTGTGACCTAGGTAGAGGTTCTTGACTCTAACACCTCGATCAAATGTTAGCGCGGAACAGGGGTCATTGTGACGTTCCTACACAAGTCCTCTAAAAGGGGAATTAATCAAATGCAAACCATGATTATATTATTAATATATAAAATGTTTAATTCAGTTCAATGAAACAACATTACACTTGGTTGAAATGGCTACCTTTACAAAAGTAATCAAAGAGTGCAACCAAAACGTATTAAGGTCTCAAGAAAATAGGTTCAAAATTCAGAAAGCAGTTACTGTTTTCTAATTGATGAACAGTCGTTGTTTAACAGCCACAAGAACCCAAATCTGATTTTCGTTCTATATCTGATATTTTTTGTCTACACTCAAGTTTTACATGTGACCCATATCAGATTTGCCCATTcacaccagagatctgtatataacgCTCATGTCTCCGTcataacaatgggagtcgttgtcccaaaggcgggaaggcaggcgacaaccttaggtccaaaataagcccatagaaacgcttTGGGCTTATTTTGGATAGCTTTTTGGCAAGAGTGAAACCTCGTTACCTCCTCTCTGCTCACACTGATGTAGCCTCTGAAGTAGCACACAGATGCAATTCTcatttcctgtctctgttcctttAAATATTAGGGTGGTTGTCATGGTCAAGGCAAAtcatgataaaaaaataaaaagttacatTTCAGAGCAAAGAAATCTGATCTGAGCGTCCAGACAGAGGTCACATATGGAGGATTGGGTTTGTATCAGGATTCAGCTCCACATATGGAGATGGTATAAATCGGAAGTCAACAGATCTGATTCCATGTGGTCTTTTGCTGTTTACACGTTAGGGAAGAAGATCAGATAGGTATCAGATATGCAAATAATTGGCAAACGATCTGAATTGGGCTGCTTCTGTAAACGCAGCATAAAGGTGTCCAATTATGAACATCATGAATAAATCTCTATACTACACATAGGGGCATTCGCTTGTTTAACCAAAAGACGACTATTTAGACATTCATTTGTCAAGCAGTACTACAAGCAGTAAGCTAGTGATAGAgtgcgtccaaaatggcaccctattccctatatagtgcacaactttggaccagggcccataggggtctggtcgaaagtagtacactatatagggaataaggtgcctttTTGGGACGGAGCCATACACACCTGTGAATTAGTGGGTTCCCGTAAGATATTCGGTCGAGATGAAGCCAATCGATATTGCGTAACCACAAAACATGaatctaccttaacctgttcccCCACAGCTGGTTATTGAGCACAAGATGAGTTTCATAAGAATTTCGAAAAGATAAAATGTCGACCTTCGAGTCAGCCATAGAGTATATAATTTGAATGATGTGTTCTGAATAGAGCTGTGTCACTGCACTCCGAACCAGACTAGAGCTCACCTGGAAAGAGGGGTCTAACAACTTCTGCACTCACACAGAGATAACTCCTATAAGTAAGAATACAAGTATACATTTAGGCTTCCTCGCAGAGGAATTGGCTGTTATGACCTGTTACCTCATTGCATGCTGAAGTTGTTTATTCTTTTTCCTAAGGAAAAGGTATCGACAATATGTTAACATTCTATTCGAGATACTGTAGATTGTATAGACAAATACTGTACTTGCATGACAGGTCGAGGCTGACTGATTCACACGCACGGTTGGATGTTTTGACTTACTATTACATACTGGGCATATACGTTTTCAGATAACAGAATATTAATTGTTTTTGGTTGACGTGGTGTTTTTTCTCTCCAAGTTCAGGCATGTTTATGTTGGAAGATAAATTGTTTTGTGTATTTTCAACCTCAATCGATTAATTATTCGCAACCAAATAACATCTTGAGATAATTTAAAAAGCAGTTTAAATTTTTTTCCTAACACCTATTAAGGGCTAGATTCAATCCGTATCATGGAAGATCTGCATTATAGCACGATTGAAATTGAAAGGGCATTTCTTATTGAGCcaacatatgcagtgtttaccatGAATTTGCGAACGCAGaaacattgccttttaaatttCAATTGAGCTAGTGCGGATCTTCCTCGATAAGGATAGGCTTAAGTGTACAATTTAACACCCTTATACaaagcacacatacagtatagtagGAATATTCAAATAAAGCTGCAAAAAACAGTGTACCCCCATTTTGAAAGTTAATACTATTCATTCCTAGCTAGGAAAACAGTTCCCTGAGGAAATATGCTTAATATATTCTAGAACTTCCAAACTATTTATGCCCGAGGGAGAAAAAACATAATCTCACGTCAATATTCAGAGTATACCATAATTTTGTTTGAGATGATTTCTCCTTGACTGACATAATAAAATATGCTGACAAATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1548657 lncRNA upstream 34064 24187265 ~ 24208476 (+) True G1354772
TU1548653 lncRNA upstream 65743 24176219 ~ 24176797 (+) True G1354769
TU1548616 lncRNA upstream 141651 24100666 ~ 24100889 (+) True G1354733
TU1548612 lncRNA upstream 148543 24093550 ~ 24093997 (+) True G1354729
TU1548594 lncRNA upstream 180344 24061993 ~ 24062196 (+) True G1354711
TU1548715 lncRNA downstream 17512 24329508 ~ 24330130 (+) True G1354827
TU1548722 lncRNA downstream 26594 24338590 ~ 24338795 (+) True G1354834
TU1548725 lncRNA downstream 28232 24340228 ~ 24340617 (+) True G1354837
TU1548724 lncRNA downstream 28704 24340700 ~ 24343798 (+) True G1354836
TU1548726 lncRNA downstream 32452 24344448 ~ 24345329 (+) True G1354838
XM_021565314.2 mRNA upstream 7871 24212179 ~ 24234669 (+) False ghdc
XM_021565315.2 mRNA upstream 7871 24212244 ~ 24234669 (+) False ghdc
XM_036946579.1 mRNA upstream 7871 24212312 ~ 24234669 (+) False ghdc
XM_021565313.2 mRNA upstream 7871 24212611 ~ 24234669 (+) True ghdc
XM_036946577.1 mRNA upstream 41288 24166190 ~ 24201252 (+) False LOC110491683
XM_036946585.1 mRNA downstream 38013 24350009 ~ 24363391 (+) False LOC110491689
XM_036946586.1 mRNA downstream 38411 24350407 ~ 24363391 (+) False LOC110491689
XM_021565322.2 mRNA downstream 39208 24351204 ~ 24363389 (+) False LOC110491689
XM_021565323.2 mRNA downstream 39225 24351221 ~ 24363389 (+) False LOC110491689
XM_021565324.2 mRNA downstream 39230 24351226 ~ 24363389 (+) True LOC110491689
TU1548560 other upstream 152506 24085708 ~ 24090034 (+) True G1354681
TU1548546 other upstream 247519 23993618 ~ 23995021 (+) True G1354668
TU1547936 other upstream 753928 23480089 ~ 23488612 (+) True LOC110491671
TU1547458 other upstream 943787 23298457 ~ 23298753 (+) True G1353660
TU1547339 other upstream 1116229 23123859 ~ 23126311 (+) False LOC110491658
TU1549199 other downstream 358443 24670439 ~ 24680719 (+) False LOC110491698
TU1549194 other downstream 358603 24670599 ~ 24681115 (+) True LOC110491698
TU1549200 other downstream 369418 24681414 ~ 24683919 (+) False G1355273
TU1549230 other downstream 452643 24764639 ~ 24783512 (+) True dcakd
TU1550905 other downstream 1764545 26076541 ~ 26089383 (+) True znf281b

Expression Profile