RNA id: XM_021565324.2


Basic Information

Item Value
RNA id XM_021565324.2
length 1795
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC110491689
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 24350009 ~ 24363391 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGTAACCCGGATGTTCAGTTACACAACGCGGAAATACAGGATAGAGTCAGTCGCCACACTGATATGTGAAACAAACATCAAAAACAATAATTTGAAAATTAAGGGCAAATACTACGACTGGAATCTAAATCGACCCCCCCCTGCTGTCTCTCTTGGCGTGGCCAAGCCCCTCTCATTCAGGATAGCCTCTGCACAGCTCCATGGCGGGTCGTGGAGGACCGGCGCGACCCAACGGCTCGGCGGCAGGCAACAAGATCTGCCAGTTCAAGCTGGTGCTGCTGGGGGAATCGGCGGTGGGCAAGTCCAGCCTGGTGCTGCGCTTCGTCAAGGGCCAGTTTCAGGAGTACCAAGAGAGCACCATCGGAGCTGCCTTCCTCACACAGACTGTCTGCCTGGACGACACGACAGTCAAGTTTGAGATTTGGGACACGGCAGGCCAGGAGCGATACCACAGCCTGGCGCCCATGTACTACAGAGGAGCCCAGGCGGCAATTgtggtctacgacatcaccaaCAGAGACACTTTTACGCGAGCAAAGAACTGGGTGAAGGAGCTGCAGAGACAAGCCAGCCCCAACATAGTCATCGCTCTGGCTGGGAACAAGGCCGACGTCGCTAACAAGAGAGCCGTTGATCTCCAGGAAGCACAGGCCTATGCCGATGACAACAGTCTACTGTTCATGGAGACTTCAGCTAAGACTGCTATGAATGTCAATGAAATCTTCATGGCCATAGCAAAGAAGCTGCCCAAGAACGAGGCTCAGGGCGCAGCCGGGGCAGGGGGCCGGGCCCGGGCAGGAGTGGACCTTCAGGAGCCCGCCCCCCAGGGCCGCAGCGGCCAATGCTGTGGCGGGAGCACTTAGCCAATATCCAATGAACTAACTGAACGAGCCCAGAACACAAATATTATCAAGAGAACCAATCACGGCCTAGAGAGTAACGATGCGGGAACCGTTCTCACCTCCCCAATCAAAAGGAGACCCTTTTTAAAATTATAAGCTAGAGAACTTCAGTGCGACCCTATCAcatactctctatctctctcttttaccctctatctatccctctgcTGTACCTCCCATCTTCCCAATCTCTCACTTTAATCTAATACTAACTGGATTATGTCTTAACATTTTCTgtccttttaaaaaaacattttgtcgATGGATCATACCAACTGCTATTAGCCTTTTTGTCCAGGTGGCAGGTGCATGTCGCAAAGGTTAAGTAGTCTTTTCCTCTTAAAATCATTTTCTTCCTTCCATGTTGGTCTTCCACATCTGGAAAGAGGGAAAATATGCTCCAAGGGGACAATGTGTCTTACGCTCTTTCTCCGGATCTGTCCATTTTGTAAATGAATATTAGCATTTGTTTATTATTACCGCTGTTCTTTTGGCACGAGTGGGGGATGATTATATAGGACACACCTAATGTGGTTTCCGACACGTGTGACAAATTAAACCGTAACGCAGTGTGCATTTTATCACCTAGTACACCAGACAATTATTTTTAGCATCATGTTTTTGAATCTGTAAGATAAATGTAAGAATACATTGTAAGAcctgggggagaaaaaaaaattaaaaacatggCAAGATTTTCTTGGCCAAAATGTACATTTGTTAATGGGAATAAACGTTTTAAAATAGTATAACAATCATTTGTTCACCACCAATCAAACACAAATGTTCTGTTGGGGGGGCAGCATGTGGTAAGCCAGCCTCCGACATGAGATTTAAATCATGTATATTGTTATCAAATAAACTTATCTTGTAGTTTGAGGTAAAAAAATA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07889 RAB5C; Ras-related protein Rab-5C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1548727 lncRNA upstream 5500 24345385 ~ 24345726 (+) True G1354839
TU1548726 lncRNA upstream 5897 24344448 ~ 24345329 (+) True G1354838
TU1548724 lncRNA upstream 7428 24340700 ~ 24343798 (+) True G1354836
TU1548725 lncRNA upstream 10609 24340228 ~ 24340617 (+) True G1354837
TU1548722 lncRNA upstream 12431 24338590 ~ 24338795 (+) True G1354834
TU1548979 lncRNA downstream 7034 24370423 ~ 24370721 (+) True G1355072
TU1549018 lncRNA downstream 26374 24389763 ~ 24389983 (+) True G1355107
TU1549021 lncRNA downstream 31270 24394659 ~ 24395032 (+) True G1355110
TU1549062 lncRNA downstream 80912 24444301 ~ 24444751 (+) True G1355148
TU1549006 lncRNA downstream 158257 24521646 ~ 24522052 (+) False LOC110491693
XM_021565316.2 mRNA upstream 39230 24242540 ~ 24311996 (+) False kcnh4b
XM_021565314.2 mRNA upstream 116557 24212179 ~ 24234669 (+) False ghdc
XM_021565326.2 mRNA downstream 18852 24382241 ~ 24520933 (+) True LOC110491690
XR_002468862.2 mRNA downstream 158609 24521998 ~ 24528960 (+) False LOC110491693
XM_036946587.1 mRNA downstream 158609 24521998 ~ 24560785 (+) False LOC110491693
XM_021565330.2 mRNA downstream 189183 24552572 ~ 24560785 (+) False LOC110491693
XM_021565331.2 mRNA downstream 199396 24562785 ~ 24602678 (+) False LOC110491694
TU1548560 other upstream 261192 24085708 ~ 24090034 (+) True G1354681
TU1548546 other upstream 356205 23993618 ~ 23995021 (+) True G1354668
TU1547936 other upstream 862614 23480089 ~ 23488612 (+) True LOC110491671
TU1547458 other upstream 1052473 23298457 ~ 23298753 (+) True G1353660
TU1547339 other upstream 1224915 23123859 ~ 23126311 (+) False LOC110491658
TU1549199 other downstream 307050 24670439 ~ 24680719 (+) False LOC110491698
TU1549194 other downstream 307210 24670599 ~ 24681115 (+) True LOC110491698
TU1549200 other downstream 318025 24681414 ~ 24683919 (+) False G1355273
TU1549230 other downstream 401250 24764639 ~ 24783512 (+) True dcakd
TU1550905 other downstream 1713152 26076541 ~ 26089383 (+) True znf281b

Expression Profile