RNA id: XM_021565326.2


Basic Information

Item Value
RNA id XM_021565326.2
length 3634
RNA type mRNA
GC content 0.52
exon number 11
gene id LOC110491690
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 24382241 ~ 24520933 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAGCAGCGCGCGCCCATTAGCGTGGCTTTCTTGGCGCTCTCGTGAGACACAGCGGCGCACTTCAAACCGCAACCGGTAGAGCAATGTTCGGTACAAACGAACACGGAGCTATTTTGCAACAGTCCAGAGCAGGGATGAAGAGGCCCAGGAGCCCCGGGCTGCTGGAGAATGTCCTCCTGCCGAAGgccgaggaagaggaggaggatgaagaagaggagcGAGCCGCCCCTGGGCGGAGGCCTAagcgggagaggagacagagcagTGTGACTCTGTGTGAGGTGTGTAACATCCAGCTTAATTCATTGGCCCAGGCCCAGATCCACTACAACGGCAAGACTCACCAAAGAAGGCTTCGCCAGTTCAATCTCGCCAAGGCCTCCAatgccacgcacacacacacagGTACACTGTCCCAGGCCAACCCCCTCCTGGCCTCCCTATCCCTCCCGGGACGGCCCCTCCAGACCCAGCTGGACATCAAGCACTTCCTGCCGCTCCACGTCAACGCCTCCTCCCCCCTCAACCTCTTCCCCAACTTCAACATGATGGACCCGGTTCAGAAGGCGGTTATCAACCACACGTTCGGTGTTGCACCGCCTAAGAGGAAACAGATCATCTCCTGCAACATCTGTCACCTCCGCTTCAACTCCACCAACCAGGCTGAGGCTCACTACAAGGGCCACAAACACGCACGCAAGCTGAAATCCATGGACGCCCAGAGGAACCGTCAGAGGGGCCATGGCTCcatggcagggagggagagagacagagacagggggaagACTGGAGTGGCAAAGTTCCTACCAGCACTGATGGACCCCAGCCTCACAGAAGGAACAGgcctgCTCTCGTCTCACCAGCCCCCCACCAGACCGAAGCTAGATGACACCCTCCAGGGGGTCTCCCCCACCCCTATGCCTGTCTCGGAGACCTCTTCCCTGGACGCCTTggccctcctctccccccacgTCTCCCCTGCTGTCTACCAGCTCTCCGAGCTCACGTCAGATGGTAGCCCTATGGAGGGCCCCAGCCCGACCCCAGACTCCAACCCGTCACTGGAGGGCCAGGGGGAGTCCCCAGGGGCAccaggaggggaagaggagaccaGGCAGGGCAAAAAGAGCCCCCCTGCCAAGCAGCACCTCCACTGTCCCATGTGCAAAATCACAGTCAACTCCTCATCCCAGCTAGAAGCCCACTATAGCGGCTCCAAACACAAGCAGATGCTGGAGGGCCAGGTGGGTGCTCAGGCGCGACGCCGAGGCAAGGTAATGTCATTGCTTAGGCCGACATGCAGGAGCAAGCAGGCAATAAGCAGCAAGGCCAGGGTGGGCGTGGCCCTGGCTAGCCAACCGTTCCACTGCGAGATGTGCGAGGTGTCCGTCAACTCGGAGACGCAGctcaaacagCACATGAGCAGCAGAAGACACAAAGACCGGTTGTCAGGAAAGCCCCAGAAACCGAAGTTCAGCCCTTATACTAAGAGCCAGCCAAACCCTGTTTTAGCGAGCGTGAGATGGAGTGGTTTCCCGTTTGGGGGGGTGACCTCGGCCATAGGGAAACTGGCCAGCCACTGCCACCTCAGCACTTACAGCCCTCAGACCAAACTGGCCCTGCAGAAGCAGCTGTCCAAGGCCCTGTCGGCAGGTTTCCTGGCCAGCCGCATGAACCCGGCCACCCTTTGCACCATGGCCTCCAATCCTCTGACCCTGCGGTGCCCCCCGGGGCCAGGCCATACACCCCTCATCCAGACCCCCCTGCTCAGCCCCGCGCTCTTCAGGCCCGCCCCGGGGCCCCTGAGGGCCACTCACACGCCCATTATCTTCTCGCCATACTAGCCGAGTTTGGACTAGCCTGGATCAAATTggcatacatttacattttagtagagCAGACGATCTAGCCCAGCCTTTCTAGATGAAAAATAAGGACCTAAGTGGAGCTACTCTgaggccctgtccagaaacaaccctttACCCTCCATCCTTGGCAGTTGTGCACAGTACAGTATATCATTTAATGATTAGATAGGTACTGTATGTAAGCAATATGGTTGGAGCTCCACTTTgacttctaataggctaatttgAATGTTCACACTATCGCTGAAACCCATCAAATCCTTTCAGATCTTCACAAGTGCACAGAGGTTAAGGGTTGATTTTGTACAGGGCCTAAAATGTTTCTATGCAGCCAATGAGAGCAGAGCAGCGTGCCACCAAGTCCAACATGCAAAACCGCTTACTGGCTACGGTGCTACACACTGGAGAACCAGAGATGGCCGTGGCGTTTCAGCCACAAAATTGTTGCCCCTCTCTCCCGTTGGCTCTCTGACGACTGTCGACTGCATGCTCCAACGTGGTCTGGAGGACCCTCTTTGAAGCCATAGCGATGAACGATCAAGTTGTATTTGTTTTGTGCTATTTATTAGATGACGATAgagaagtaggcctatatttatgtCACGTATAGTGTCTGTTGCCGATGTCCCCTCGCTTTAGGATTTTCCAAACAGTTTCACTCTGGGAGTAGGCCTACACTGTCAGATTTCCCTTGTCCAGTATTAGTCCAGCACCTTTTTGTCAAGGATACTGTtttatttgtgttgtgctttcaGCTAAGGTACTTTTCAACTAACACTTTCATTGAAACCCAGTATTAAATCCCAAAAGAGCAAACCTAGCTAGGTAGAGCCTCCACTGGCCGCCAatgtatcactctctctctctctctctctctctctctctctctgtctgtctctcttgtctctgtctgtctgtacttctGTTTTCTAAAGCCTTGTTGATGTTGGCCAACCTAAATAAAACAGGTTTGGTTTGCTAGGTTGCAGCCGGTATCCACcgcattcacggtaaatgctgcataCTGTATGTCGGCTCAAACAGAAAGGACTTTCAAATGTCAATTCGCTATAACGCGGATCTACCTAAACGGTTTGAATCCTGGCTTTGGTCTGGGAACATGATGCCGAGTCCAAGCAACCACAGACCCATCAGACAACACATTATTAGTAATTCTGTGTGGCTCAGGCAACGGCATGGTCATGTGTTCAATTCTTGCAGGGAACACATACACGTACTAaagaatgtatgcactcactatacttcaagtcgctctggataaatgATGTATACCCTGCTCTCAGCATTTGACAGAGAAAGATACATAAAATgtagctggtcccagatctctataTGCTTTCAAGATATTCAGAGGAGCTGGCTCAAGCAGATCTGAAGTCAGGTTAACATTGATGGGTATAAGAAGGTATCGATGGGGTAAGGGTTACTCTCTCTCGTGCTCTTTATTtttcctctttctccctttcttcccTGTGTAAAAAGCAGTATTAGTAGAATATTTTACTTCAGGGAAACAAgactaaagagacagagagaagggggagggagaaagagagtgagagaggcctgCGTTCAAAACACCCATAATCTGGGGCTTATTCAGGAGGGTGCAACGTCACAGAACATTTATCATTTAGCAtagaagtacagtaccagtcaaaagtttggacacacctactcattcaatggtttttctttattttttactattttctacattgtagaataatagtgaagacatcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1548979 lncRNA upstream 11520 24370423 ~ 24370721 (+) True G1355072
TU1548727 lncRNA upstream 36515 24345385 ~ 24345726 (+) True G1354839
TU1548726 lncRNA upstream 36912 24344448 ~ 24345329 (+) True G1354838
TU1548724 lncRNA upstream 38443 24340700 ~ 24343798 (+) True G1354836
TU1548725 lncRNA upstream 41624 24340228 ~ 24340617 (+) True G1354837
TU1549006 lncRNA downstream 713 24521646 ~ 24522052 (+) False LOC110491693
TU1549004 lncRNA downstream 1375 24522308 ~ 24522817 (+) False LOC110491693
TU1549000 lncRNA downstream 7910 24528843 ~ 24540492 (+) True LOC110491693
TU1549008 lncRNA downstream 81964 24602897 ~ 24656808 (+) True G1355097
TU1549157 lncRNA downstream 100762 24621695 ~ 24636240 (+) True G1355239
XM_036946585.1 mRNA upstream 18850 24350009 ~ 24363391 (+) False LOC110491689
XM_036946586.1 mRNA upstream 18850 24350407 ~ 24363391 (+) False LOC110491689
XM_021565322.2 mRNA upstream 18852 24351204 ~ 24363389 (+) False LOC110491689
XM_021565323.2 mRNA upstream 18852 24351221 ~ 24363389 (+) False LOC110491689
XM_021565324.2 mRNA upstream 18852 24351226 ~ 24363389 (+) True LOC110491689
XR_002468862.2 mRNA downstream 1065 24521998 ~ 24528960 (+) False LOC110491693
XM_036946587.1 mRNA downstream 1065 24521998 ~ 24560785 (+) False LOC110491693
XM_021565330.2 mRNA downstream 31639 24552572 ~ 24560785 (+) False LOC110491693
XM_021565331.2 mRNA downstream 41852 24562785 ~ 24602678 (+) False LOC110491694
XM_021565333.2 mRNA downstream 41852 24562785 ~ 24602678 (+) False LOC110491694
TU1548560 other upstream 292207 24085708 ~ 24090034 (+) True G1354681
TU1548546 other upstream 387220 23993618 ~ 23995021 (+) True G1354668
TU1547936 other upstream 893629 23480089 ~ 23488612 (+) True LOC110491671
TU1547458 other upstream 1083488 23298457 ~ 23298753 (+) True G1353660
TU1547339 other upstream 1255930 23123859 ~ 23126311 (+) False LOC110491658
TU1549199 other downstream 149506 24670439 ~ 24680719 (+) False LOC110491698
TU1549194 other downstream 149666 24670599 ~ 24681115 (+) True LOC110491698
TU1549200 other downstream 160481 24681414 ~ 24683919 (+) False G1355273
TU1549230 other downstream 243706 24764639 ~ 24783512 (+) True dcakd
TU1550905 other downstream 1555608 26076541 ~ 26089383 (+) True znf281b

Expression Profile