RNA id: XM_021565332.2


Basic Information

Item Value
RNA id XM_021565332.2
length 4167
RNA type mRNA
GC content 0.51
exon number 22
gene id LOC110491694
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 24562785 ~ 24602678 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCGCACAGCCTTGCAGCATCCCAACGCATCACATGACCATCCCCCAGCAGATGGTTTGGGTGATGTCACATTGATTCGTGAGGAGAGCGCCTTTCGTTCGACCTGGAGAAATTCTGAAGGATTTTATCACAAGGTGAGTGTGTCAGGTGGTCACCATGGGGGAACTGTTCAGGAGCGAGGAGATGACGCTTGCCCAGCTCTTCCTCCAGTCTGAGGCAGCCTACTGCTGTGTCAGCGAGCTGGGAGAACTGGGAATGGTTCAGTTCCGCGATCTCAACCCAGACGTGAATGTGTTCCAGAGGAAGTTTGTGAATGAAGTGAGGAGGtgtgaggagatggacaggaaACTAAGGTTTGTCGAGAAGGAGATTAAAAAAGCCAACATCCCGACTGTGGATACAGGAGAGAATCCCGAAGTCCCCTTCCCTAGGGATATGATTGACCTGGAGGCCACATTTGAGAAGCTGGAGAACGAGCTGAAGGAGATCAACACCAACCAGGAAGCCCTGAAGAAGAACTTCCTGGAGCTGACCGAGCTCAAGCACATCCTGCGACGTACCCAGCAGTTCTTTGACGAGATGGAGGACCCCGCCCTGATGGAAGAGTCGTCAGCCCTAATGGAGGGTAACGAGGGTGGCCGGGGAGCACCGCTCCGACtcgggtttgttgctggggtgatcaGCCGGGAGAGGATCCCTACCTTTGAGAGGATGCTGTGGAGAGTGTGCCGCGGCAACGTCTTTTTACGTCAGGCAGAAATCGAGGACCCTCTGGAGGACCCTGCCACGGGCGACCAAGTCCACAAGTCAGTCTTCATCATCTTTTTCCAAGGCGATCAGCTGAAGAACAGAGTCAAGAAGATATGTGAGGGGTTCCGGGCCTCCCTCTACCCCTGCCCCGAGACTCCCCAGGAAAGGAAGGAGATGGCTGCTGGGGTCAACACCCGTATTGACGACCTCCAGATGGTGCTGAACCAGACAGAGGACCACAGACAGAGGGTGCTCCAGGCTGCAGCCAAGACCATGAGGGTGTGGTTCATCAAGGTGAGGAAGATGAAGGCCATTTACCACACGCTGAACCTGTGCAACATCGACGTCACCCAGAAGTGCCTGATCGCCGAGGTGTGGTGCCCTGTATCCGACCTGGACTCCATCCAGTTCGCCCTGCGCCGAGGAACGGAGAGGAGTGGCTCCACAGTGCCCTCCATTCTCAACAGGATGACCACCAAGCAGACTCCGCCCACCTTCAACAAGACCAATAAGTTCACCTCTGGATTCCAGAACATCGTGGACGCTTACGGGATCGGAAATTACCGGGAGATTAACCCAGCACCGTACACCATCATCACTTTCCCTTTCCTGTTTGCCGTCATGTTCGGGGACATGGGTCACGGTGTGCTGATGACCTGTGCCGCCCTCTACCTGGTCATCCGAGAGAGCCGCATCCTCTCCCAGAAGACTGACAATGAGATGTTCAACATGGTATTCGCTGGACGCTACATCATCCTGCTGATGGGAATCTTCTCTGTCTACACCGGTATCATCTACAACGATTGCTTTTCCAAATCCCTCAACATGTTTGGCTCCGGTTGGAGTGTCCGGCCCATGTTCAGCCCCAAGGGAGCCAACTGGACGTTTGAAACTCTCAATGAAAATAAGGTGCTGCAGCTGGACCCAGCCGTGCCGGGTGTCTTCAATGGCCCCTATCCACTGGGTATAGACCCGATCTGGAACATTGCCACCAACAAGTTGACCTTCCTTAACTCCTTCAAGATGAAGATGTCTGTGATCCTGGGAGTGATCCACATGATGTTTGGCGTCTCTCTCAGCCTGTTCAACCACCTGTACTTCAAGAAGCCCCTGAACATCTTCCTGGGCTTCATCCCTGAGATTGTCTTCATGGCCAGCCTGTTCGGCTACCTCATTATCCTGGTCTTCTACAAGTGGACGGCCTACGACGCTTTCACCTCCAAGGACGCGCCCAGCCTCCTCATTGCCTTCATCAACATGTGTCTCTTCAACTACGGCGACGTCACCAATAAGCCTCTCTACCGGGGACAGATGGGGATCCAGATTGTTTTGGTGCTGATTGCCCTTGCATGTGTTCCCTGTATGCTGATAGTGAAAACTATGGTGCTTCGGCGCCAGCACCTGTGGAAAAAGCACCTGTCACAGAAGAGGGAAGAATGCCCTGCAGAGAATCTAGAGCAATCTTTAGAGCAAACAGGCGTGTCCTCATCAACCGGACTCACCCAACAGGGCACACAGAAATTCGGAGGGGTGCGGGTGGGCAACGGGCCCACGGAGGACGAAGCTGGTATCATGGACCACGACGCGCTCTCACAGCACTCTGAGGACGGAGACGAGCATGCAGAGGAGGAACCGTTTGACTTTGGAGATGTGGCGGTCCACCAGGCCATCCACACCATAGAATACTGCCTGGGCTGCATCTCCAACACTGCCTCCTACCTGCGACTCTGGGCCCTCAGTCTGGCCCATGCACAGCTGTCGGAGGTGCTTTGGACGATGGTGATGCACCTGGGCCTATCCTCCAGGAGCGGAGGCGGCTTCTTCGGCCTGTCAATCATCTTCGCGGCCTTCGCCATGCTCACCGTGTGCATCCTGCTCATCATGGAAGGCCTGTCCGCCTTCCTGCACGCGCTCCGTCTCCACTGGGTGGAGTTCCAGAATAAGTTCTACACGGGGCAGGGCTTCAAGTTCGTCCCCTTCTCCTTCGAGAGCATCCTGGAGGGGCGATTTGACGAGTAAACCAGCTCGGCCACATCCCTGACAAATCCCAGACCAACaccccctcccacccccccacccccagactTTTCCCTCTATAAACGTTTCTGCATGGACCCCCCAAACTGCAGCTCTCTTACCCCCTCTAGGAGCCATGTTGTGACGTGTCGGTTTCGTGAGTTGTGTGTCTACGCTCCTCTTTGCCCCACTCCAGCCTCGCAATGTTGtgaagtgttgttgttgtttttccattTTCACGaaactccctccttccttccgcGATGCCATAAGAAGTTGCTACATATTGTGTGTTGTCGCGTTTCACCCATGAGCTTATCAGTCGCTCTTCATTCATATGAAAGATGGTCATGGAGTGTTTATTCCAAAACGCATGGCTATGTAATGACAGCTGTTGACAACATGTGTATGTAATGATGCTATCCCGTAGCACTGCTGGTACTAACATCATACAATTTTGTGAAAGTGGTGAAGAGAACAAACGATGGGTCGGTGACAAAGTAGCAACACTGTCAAGTTTTATTCTCTGGCATCCTATGGCATCCTATGGCATTCCCTCAATGTGACTGGTGTAAAATGTTCTGGTGTATCTATTCAAAGAGAATGTCCTCTGTGTGTTGTGGctctccctgtatatattgttttgtGCAGCATGATCTAGCTATTAGCGTGACCGTGTCAAGAGGAAATCATAACAGATGCTTCCTGCTAAGGATATGACCAAATTGAGATGGGGGAGATTATGGGGACATGTTCAGGAGCAGTTTGATTTGACTGTATTTTCTGAACCCGCTCCGTTGAGGAGCAGGCAGAGCGATATTTAAATCAAAACATAAAATGCCTTTCTATtggttactgtactgtactcatttACTTGCCCCTAACTCGCAGCAACTGTATTGTtgtttattatactgtagtaCTTACACATATATTATTTTAAATGCTAGGTTTGAAGCCTATTCTACCCTCAAACTCATGTGATGAAAACAACACTCTCTTTGGTTCATATCGGTGGTTGTGTGTGATGTGGGCTGTCAAGTAATGAAACATATCTATCAAAATACACACATTAAGTCCTCTCTAGTACAATCCTATGGTATGTAGTCATCgacaaatatttattttgtattattttcgtTCTGCGAATACATATTTTAACTGGTTAATGTGGTCATCtgaattgttgtgttgtgttcataGTCGGTGTGTACATGTGCGCGTGTGCATGCCCTGCAGAAGGATTGGCCTATTTAAAACAAAGTCCTGTTAACGGTCAAATTTACTCTGCAGTGTAACATGTGCTCTGTCAGTTGATGTTTGTACATGATATCAGTCAGATGTGTTTGTGAAGCTAACTATTAAAACAAAGTatttgggggaatggccctagtgtCCTCA

Function

GO: NA

KEGG:

id description
K02154 ATPeV0A, ATP6N; V-type H+-transporting ATPase subunit a

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1549000 lncRNA upstream 22294 24528843 ~ 24540492 (+) True LOC110491693
TU1549004 lncRNA upstream 39969 24522308 ~ 24522817 (+) False LOC110491693
TU1549006 lncRNA upstream 40734 24521646 ~ 24522052 (+) False LOC110491693
TU1549062 lncRNA upstream 118035 24444301 ~ 24444751 (+) True G1355148
TU1549021 lncRNA upstream 167754 24394659 ~ 24395032 (+) True G1355110
TU1549008 lncRNA downstream 219 24602897 ~ 24656808 (+) True G1355097
TU1549157 lncRNA downstream 19017 24621695 ~ 24636240 (+) True G1355239
TU1549162 lncRNA downstream 40169 24642847 ~ 24645022 (+) True naglu
TU1549011 lncRNA downstream 54839 24657517 ~ 24657836 (+) True G1355100
TU1549190 lncRNA downstream 64915 24667593 ~ 24667950 (+) True G1355269
XM_036946587.1 mRNA upstream 2001 24521998 ~ 24560785 (+) False LOC110491693
XM_021565330.2 mRNA upstream 2001 24552572 ~ 24560785 (+) False LOC110491693
XR_002468862.2 mRNA upstream 33826 24521998 ~ 24528960 (+) False LOC110491693
XM_021565326.2 mRNA upstream 41853 24382241 ~ 24520933 (+) True LOC110491690
XM_021565324.2 mRNA upstream 199397 24351226 ~ 24363389 (+) True LOC110491689
LOC110491695 mRNA downstream 3386 24606064 ~ 24607211 (+) True LOC110491695
XM_021565336.2 mRNA downstream 24004 24626682 ~ 24645021 (+) False naglu
XM_036946588.1 mRNA downstream 67663 24670341 ~ 24680793 (+) False LOC110491698
XR_005036483.1 mRNA downstream 82252 24684930 ~ 24697577 (+) False coasy
XR_005036484.1 mRNA downstream 82253 24684931 ~ 24697577 (+) False coasy
TU1548560 other upstream 472752 24085708 ~ 24090034 (+) True G1354681
TU1548546 other upstream 567765 23993618 ~ 23995021 (+) True G1354668
TU1547936 other upstream 1074174 23480089 ~ 23488612 (+) True LOC110491671
TU1547458 other upstream 1264033 23298457 ~ 23298753 (+) True G1353660
TU1547339 other upstream 1436475 23123859 ~ 23126311 (+) False LOC110491658
TU1549199 other downstream 67761 24670439 ~ 24680719 (+) False LOC110491698
TU1549194 other downstream 67921 24670599 ~ 24681115 (+) True LOC110491698
TU1549200 other downstream 78736 24681414 ~ 24683919 (+) False G1355273
TU1549230 other downstream 161961 24764639 ~ 24783512 (+) True dcakd
TU1550905 other downstream 1473863 26076541 ~ 26089383 (+) True znf281b

Expression Profile