RNA id: XM_036946588.1


Basic Information

Item Value
RNA id XM_036946588.1
length 1983
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC110491698
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 24670341 ~ 24681115 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAACTtcaaatggatcagccaaaggGCAAGGGTCCCTTTTTTCCAAAAACTACCACCTCACAATCTCCCTAAAATCAGCACGAACCCCTCCGGATGTAGCGCTCAAAAGTGCGTCCCACTTCTAAAGCAGCTGCTTCATCTCGATGTTCTTCTTTATCAATAGCTACCACGACGATTTCCCTTTTTCAAACACGCGGGCTCTTTCTCCCGGATTCATCGATTTCCTGGAGCGTGACGTCCCGGCCATCTAGAATCACAACAACAAGCTGACTTCTGCCCCATGGGAGCGTTTACATCGTTAGTCGACGCTTTACCGGACACAGACTAGTTTACAGACTATACTTTAACACAAAGTTTGCTCAAAATAATAGCCTCTTACATAGGCTTCATTTTCTTTACTAGATTTTGCGGGACGCGATGGAAGAAGAGCCTCATGGCAGGATATCGGTGAATAAATACCAACCGACGGAGTTGAAAGTCAAAGAAGAAGAGGACCATGGCGATTTCAGTTATCAAAGGCCAGGAGGGAGCCCAAACTCACACTCCGACAGTGGGAAGACTTCCTCGGAGTCAGGGGAATCAGACAGAGAGCTGCCCAAATCAGACAGACCGCACAACTGCTCTCTGTGCAGAAAGGGATTTTCCCAATTGGGACATCTGAAATTACACAATAAaacacatacaggagagaaacgCTATGGCTGTATTCAATGCGGGAAGAGTTTCGCAAGGTCAgactatttaaaaaaacatgcgAAAATTCACAGTGTAGAGAAACCATACAAATGCTCTGTGTGCTGCAAGGTATTTGCTAGGTCAGACATCTTAACCATACACACGAGAGTTCACACTTCAGAGAGGGTGCAGCGTCCCACCAAAGAGAAACTCTATCCCTGCTCTCAGTGCGGAAAGCGGTTCTCTCAATTGGGAAACCTCAAATCGCATGAGAGCGCTGTGCATGCAGGAAAGAAGCCTTTCAACTGTCCTGAATGCGGAAAGGGGTTCTCACATTTTGGTAACATGCAAAAACACCAGCGTgtgcacactggagagaaaccataCATGTGCCCTGATTGTGGGACAGGTTTTTCCAGATCACATCACCTCAAAACACATCAGCAAATTCATAAAGGGGAGAAGCCTCACTTATGCACTGAATGTGGGAAGGGTTTTGCTAGGGCAGACTCTTTAACGGCACATCAGCGAGTGCACAGGCTAGACAACAAGCCGTACGGATGTTCTGACTGTGGCAAAGCCTTCTCTTCATTTGGAAACTTAACACAGCATCAGAGAATTCACACCGGAGAGAAACCATATCAGTGCTCTCAGTGTGAGAGAAGCTTTGCTTTTTCAACAGATTTGAAAAATCATCAGAGGAGACACACTGGAATGAAACCATACTATTGCTCGGACTGTGGGAGAAGTTTCACAACGGCATCTTCCCTAAAATCACACCAGAAAATTCACAAATTATAAAAGTCATGGTCTCCGTGTGGTAGTAATGTCTCTCTACATTGTCAAACACTAGCGAAAACTCAGCTGTCTAAATTCTGCCGATGGGGAAACCTTGAGGAGGCTCACATTTTTCTTAGGAATACTAGAGGCACAATATTCTCATGGTTTAATCCTTGGTTTAAAAACAGCATAGGAATtcaatgttttgtttttaatacagTGATTTTGGTTAATTGGATGGTTATTTTTACACTGAAACTACCTGAATTGTTTTTACCCAGAAATCTCTTTAATGTTTGAATGTGTTTACTAGATAGCTCCAGTTGTGTGAATTTTATTCTATATATGTTGATAATGACAAGCAAAAAAACATGACTATAGGGAACAAGAATCTCCTGCAAATTATGTTAACTTTTTGTTGTATAACCTGCATTTGTCATAAGAGGGTCAGGACACATTACATTGCAATCACAAAACATATGCAATGTCATAAGTTATATTGACAATAAACTTTAGTTGCAAACTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1549190 lncRNA upstream 2391 24667593 ~ 24667950 (+) True G1355269
TU1549011 lncRNA upstream 12505 24657517 ~ 24657836 (+) True G1355100
TU1549008 lncRNA upstream 13533 24602897 ~ 24656808 (+) True G1355097
TU1549162 lncRNA upstream 25319 24642847 ~ 24645022 (+) True naglu
TU1549157 lncRNA upstream 34101 24621695 ~ 24636240 (+) True G1355239
TU1549201 lncRNA downstream 1123 24681916 ~ 24684055 (+) True G1355273
TU1549239 lncRNA downstream 60266 24741059 ~ 24741347 (+) True G1355304
TU1549240 lncRNA downstream 60562 24741355 ~ 24741580 (+) True G1355305
TU1549246 lncRNA downstream 76257 24757050 ~ 24759143 (+) True pus3
TU1549289 lncRNA downstream 184261 24865054 ~ 24870076 (+) False G1355352
XM_021565336.2 mRNA upstream 25320 24626682 ~ 24645021 (+) False naglu
LOC110491695 mRNA upstream 63130 24606064 ~ 24607211 (+) True LOC110491695
XM_021565331.2 mRNA upstream 67663 24562785 ~ 24602678 (+) False LOC110491694
XM_021565333.2 mRNA upstream 67663 24562785 ~ 24602678 (+) False LOC110491694
XM_021565332.2 mRNA upstream 67663 24562786 ~ 24602678 (+) True LOC110491694
XR_005036483.1 mRNA downstream 4137 24684930 ~ 24697577 (+) False coasy
XR_005036484.1 mRNA downstream 4138 24684931 ~ 24697577 (+) False coasy
XM_021565337.2 mRNA downstream 4140 24684933 ~ 24700595 (+) False coasy
XM_021565338.2 mRNA downstream 4141 24684934 ~ 24700595 (+) False coasy
XM_021565340.2 mRNA downstream 4141 24684934 ~ 24700595 (+) False coasy
TU1548560 other upstream 580307 24085708 ~ 24090034 (+) True G1354681
TU1548546 other upstream 675320 23993618 ~ 23995021 (+) True G1354668
TU1547936 other upstream 1181729 23480089 ~ 23488612 (+) True LOC110491671
TU1547458 other upstream 1371588 23298457 ~ 23298753 (+) True G1353660
TU1547339 other upstream 1544030 23123859 ~ 23126311 (+) False LOC110491658
TU1549200 other downstream 621 24681414 ~ 24683919 (+) False G1355273
TU1549230 other downstream 83846 24764639 ~ 24783512 (+) True dcakd
TU1550905 other downstream 1395748 26076541 ~ 26089383 (+) True znf281b
TU1551395 other downstream 1624158 26304951 ~ 26314801 (+) False mpp3b
TU1551392 other downstream 1625699 26306492 ~ 26314801 (+) False mpp3b

Expression Profile