RNA id: XR_005036484.1


Basic Information

Item Value
RNA id XR_005036484.1
length 1803
RNA type mRNA
GC content 0.58
exon number 10
gene id coasy
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 24684930 ~ 24700595 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCAATGAATGTTGTCCATGTGCAACCGGTAGCTAGCTAGGTCAAATGGGCATGTCTCTTTATCGAAAGAATAATAACAATATTGGACAGTGGTACAACAATGTAGTTAGCCATTAGGAATAGCCAGTTGCAGACCAGATTTAAACTTAACTCACGTTACCTTGCTACAGCATTTGCACAAGACATTGTGCCAAGTGTGTGTCCCTGCTCCGGTGACACATCTGGCCAACATGTCCATGTTCAGCACGGGCATCCTGGTgctcacctctcccctccacaCCCTCCCTCTGCGCATTGCCCCTGTACTCAGCTCGGCTGCCCAGGTGGTGGAGCGCACCCTCTACGTCCATCTCCATCCAGGCCTGAACCTGGGTGCAGGCGGGGGCCAGCCCAGGCCTGTCTTCATCCAGCCCGTGGTGGATCTGTCCAGCCTTATCACCGGGCTCTACAGCAATGCTGCCTATGTGTGCGGCCACCTGGACGTACGAGTGCTCCTCACCAACGTCCGCGCCCAGCCCAACAACGCCTCCAGCCCAGAGACAGGTGGGACAGGGGTAGCATGTAACCCCTTCCCTTCCCCACagcccctctcccactcccccgaGGTGGTGCTAACAGACTTCGCCCCGCAGGACCCGGGCCAGTCCCCGCTGGTGGCCCAGTGTCTGCAGAAGTACACGGGCCACTGTTACGTCTGCACGCCCGGCTTGGCCTCGGTGCTACTCCACCCGCAGCTGCAGAAGCtggaggaagaggtagaggagggcCAAAAGGACGACTGGGATAGTAGGTCGGAGCGCATGGAGACTTACAGTGACGTGGTGGTAGGGGGAACGTTCGACCGCCTCCACGGAGCGCACAAGACGCTGCTGAACATCTCTTGCCTCTTGGCGAACAAGCGGTTCCTTATCGGGGTGTGTGACCAAGAACTTCTAAAAAAGAAGGTGCTAAGGGAGCTAATTGAGCCATATGCTCTGCGGGTGCAGCGGCTCCAAGAGTTCCTGCAGGACGTCAAGCCCTCGCTGCAGTACGAGTTCGTACCCCTTTCGGAACCCTTTGGACCCTCCGTTATTGATGCCCAGCTGCAATGCATTGTGGTCAGCGAGGAGACCCGCAGGGGAGGCGAGGCTGTGAACAAGAAGCGCCTCGAAAATGGTGTTCCAGGACTGGTGCTGCACGAGATCCAGCTGCTGAAGGATGCCCaccacactgagatggaggaggagaagatcaGCTCCTCCAGCCTCCGCTCACGCCTCCTGGGGACCCTCCTCACAGACCCAAAACAGAACAAGTCCCATCTCCCCCTGGTGCCCTACGTGATTGGCCTGACCGGGGGCAGTGGCAGCGGGAAGAGCTCCATTGCCCAGCAGTTGGAGGCCCTGGGTGCGGTCCGCATCGACAGCGACCAGCTGGGCCATGAGACCTACCGGCCGGGGGAGGTTGCCTACAACAGGGTGCTGGAGGAGTTTGGATCAGATCTTATTAATGAGGACAAAACTATCAACAGACGCGCACTAGGCAGGAAAGTTTTTGGAAACAAGgctgcaacacacaacatgtggaagaagtcaagggGAGAGGTTGAAAGCCCTCACCGACATTGTGTGGCCGGAGATAGCTCTACTCGTCAAGGAAAGGATCCAACAGGCCCGAGAGGAAGGTAAACAGGTGTGTGTGGTGGACGCGGCTGTGCTGCTGGAGGCCGGCTGGACGGACATCGTGCACGAGGTCTGGGTCGCCGTCATTCCTGAGGAAGAGGCGGTGTCTCGGATCATGGTGAGGGATGGTGTCAGCCAAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1549201 lncRNA upstream 876 24681916 ~ 24684055 (+) True G1355273
TU1549190 lncRNA upstream 16981 24667593 ~ 24667950 (+) True G1355269
TU1549011 lncRNA upstream 27095 24657517 ~ 24657836 (+) True G1355100
TU1549162 lncRNA upstream 39909 24642847 ~ 24645022 (+) True naglu
TU1549157 lncRNA upstream 48691 24621695 ~ 24636240 (+) True G1355239
TU1549239 lncRNA downstream 43482 24741059 ~ 24741347 (+) True G1355304
TU1549240 lncRNA downstream 43778 24741355 ~ 24741580 (+) True G1355305
TU1549246 lncRNA downstream 59473 24757050 ~ 24759143 (+) True pus3
TU1549289 lncRNA downstream 167477 24865054 ~ 24870076 (+) False G1355352
TU1549290 lncRNA downstream 167477 24865054 ~ 24870076 (+) True G1355352
XM_036946588.1 mRNA upstream 4138 24670341 ~ 24680793 (+) False LOC110491698
XM_021565336.2 mRNA upstream 39910 24626682 ~ 24645021 (+) False naglu
LOC110491695 mRNA upstream 77720 24606064 ~ 24607211 (+) True LOC110491695
XM_021565333.2 mRNA upstream 82253 24562785 ~ 24602678 (+) False LOC110491694
XM_021565345.2 mRNA downstream 52531 24750108 ~ 24757243 (+) False pus3
XM_021565346.2 mRNA downstream 67030 24764607 ~ 24783513 (+) False dcakd
XM_036946592.1 mRNA downstream 128586 24826163 ~ 24829318 (+) False LOC110491705
XM_036946593.1 mRNA downstream 128586 24826163 ~ 24829318 (+) False LOC110491705
XM_036946590.1 mRNA downstream 128587 24826164 ~ 24829318 (+) False LOC110491705
TU1549200 other upstream 1012 24681414 ~ 24683919 (+) False G1355273
TU1549194 other upstream 3816 24670599 ~ 24681115 (+) True LOC110491698
TU1549199 other upstream 4212 24670439 ~ 24680719 (+) False LOC110491698
TU1548560 other upstream 594897 24085708 ~ 24090034 (+) True G1354681
TU1548546 other upstream 689910 23993618 ~ 23995021 (+) True G1354668
TU1549230 other downstream 67062 24764639 ~ 24783512 (+) True dcakd
TU1550905 other downstream 1378964 26076541 ~ 26089383 (+) True znf281b
TU1551395 other downstream 1607374 26304951 ~ 26314801 (+) False mpp3b
TU1551392 other downstream 1608915 26306492 ~ 26314801 (+) False mpp3b
TU1551396 other downstream 1614119 26311696 ~ 26314801 (+) False mpp3b

Expression Profile