RNA id: XM_036946591.1


Basic Information

Item Value
RNA id XM_036946591.1
length 2127
RNA type mRNA
GC content 0.52
exon number 2
gene id LOC110491705
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 24826163 ~ 24829318 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctctctctcacacacacacacacacacacacacacacacacacaaatctgctGTCCCTTGTGAATAGACATTCTTTTCTCCCCTCACTTTAACCTCTCCCACATTATACCACATACCAAGACTGCCAGCTCCAGTAAGGATCAGAAGGGGCTCAAAGTACGCTGCTGCTCAGAGCTTGTGAAGTAAGAACAATGAGTGGCCTGAACGGGGTGACCGGTTTCGTCCTTGCGGTTTCGGTGGCCTTCCTCGGTGGCCCTCCAGGGGCTCTTGGGGGCAACATCCTCATCTTCCCCTTGGATGGCAGCCACTGGGTCAACATGAACCTCCTGATCGAGGGACTTCACGCCCGGGGTCACCAGGTCACTGTGGTGCGCTCGGCCAGCAGTTGGTACATCAAGGAGTCGTCGCCCCACTACCGCTCTATCTCCATCACTGTGCCTGGGGGCATGGACATTGAAAAACAAGACTTCTTTGCGTCCTTCCTCGTCAAAATGCTGCAGATCCAAAGGGAAGGCGCATCGCCTTTGGCTTTTGTGTCCTTCTACTCGTACATGCTGTCGGCGTTGTCAGGAATGCACCAGCAGGCCAGTCAGTTTGTGGTGGAGATGTTTGAGAACAAGGCTTTGATGCAGAGCCTGAGGGATAGCCAGTATGACGTGGTACTCTTGGACCCGGGGCTGCCCGTCGGGGTCCTGGTCGCCCATAAGCTTGGGCTACCCACTGTCTTCAATGTTCGCTGGATCACCAGCGGAGAGGGGCATTTCGTGGTGGCCCCCTCGCCCATGTCCTATGTCCCCACTTCTGGTTATGCCACTTCGGACAAAATGACCTTCGGCCAGAGAGTTGGGAATGTGTTCATCTACCTCCTCAACATGATCATTGATATGTTTGTGATCAGCCCACACTACGATACGCTGGTGAAGAGTTACTTTGAGCCGGGTACAAACTTCTACCACCTTCTGCAGGGGACGGACCTCTGGCTCATGCGGGTGGACTTTGTGTTTGAGTTCCCTAGGCCCACCATGCCCAACATTGTCTACATTGGAGGCTTCCAATGTAAACCCTCTAAACCTCTACCGACAGAGCTGGAGGAGTTTGTCCAGAGCTCGGGAGAACACGGGGTTATCTTGATGTCACTGGGAACTCTTGTCAAAGGCTTGCCCGTGGAGATCACCTCGGAGATCGCCGCCGCTTTTGCCCAACTTCCCCAGAAGGTCATCTGGAGGCACATGGGCAAGCAACCCATCGGCCTGGGCAACAACACCCTGCTGGTCAAGTGGATGCCCCAGAACGACCTCCTGGGCCACCCCAAGGTCAAGGCCTTTGTGGCCCACGGTGGCACCAATGGCCTTTACGAAGCCATGTACCACGGGGTGCCGGTGGTGGGGCTTCCGCTGCTCTTCGACCAGTTCGAGAACGTCTTACGCCTGGAGGTGCGTGGAGCGGCCAAGGTGCTTGAAGTCACCAAGATCTCCAGCCAGAGCTTCTTGGAGGCTGTACAGGAAGTCCTCCACAATCCGTCCTACAAGACCAGTATGGAGCGGCTCTCAAGCCTGCACCGGGACAAGCCCATGCATCCTCTGGACACCGCCCTCTTCTGGATTGAATTCGTCATGAGACACAAAGGGGCCGCCCACCTGCGAACAGAGTCTTACAAGATGCCCTGGTACTCCTATCATTCACTGGATGTGATTGGATTCCTACTGGCTGTTTTGTTTGTGCTGGTAGCCATTACTGTGGGTTCAATCTACTTCCTGTGCCTCAGACTATGCAGGAAGCGTAAACCCAAACAGGAGTAACGATTGGCTCTTGAATACAACAGGAAGTGACCTCACCTCTTACCATATGACTGTGAACAAATAagttcccctttttcctctcaaACATGTCTGTTGGTACgcaacaacataacaacaggaTATCTTCATAATGTACCAGTGTTTTCTTTTTTATTACACTGTATAGGTTTACATGTATAAAGAGAGCTCACTTTGATTTTTAGCATATATTTTGCATTACCATTGTGCTTTAGCCTTATAACTTTTAAACTCCTATGGTGACTGGGATGACTATGAGCACTAGAGTTTGATTCTTTATGATGAAATAAAATGGTTATAAATAACGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1549246 lncRNA upstream 67021 24757050 ~ 24759143 (+) True pus3
TU1549240 lncRNA upstream 84584 24741355 ~ 24741580 (+) True G1355305
TU1549239 lncRNA upstream 84817 24741059 ~ 24741347 (+) True G1355304
TU1549201 lncRNA upstream 142109 24681916 ~ 24684055 (+) True G1355273
TU1549190 lncRNA upstream 158214 24667593 ~ 24667950 (+) True G1355269
TU1549289 lncRNA downstream 35736 24865054 ~ 24870076 (+) False G1355352
TU1549290 lncRNA downstream 35736 24865054 ~ 24870076 (+) True G1355352
TU1549294 lncRNA downstream 41642 24870960 ~ 24871288 (+) True G1355356
TU1549295 lncRNA downstream 42711 24872029 ~ 24872612 (+) True G1355357
TU1549304 lncRNA downstream 51510 24880828 ~ 24881093 (+) True G1355366
XM_021565346.2 mRNA upstream 42651 24764607 ~ 24783513 (+) False dcakd
XM_021565345.2 mRNA upstream 68921 24750108 ~ 24757243 (+) False pus3
XM_021565338.2 mRNA upstream 125569 24684934 ~ 24700595 (+) False coasy
XM_021567359.2 mRNA downstream 28194 24857512 ~ 24861130 (+) True ccr10
XM_021564390.2 mRNA downstream 59783 24889101 ~ 24892671 (+) False ifn5
NM_001159339.1 mRNA downstream 60704 24890022 ~ 24892671 (+) False ifn5
trnaa-ugc-127 mRNA downstream 202011 25031329 ~ 25031399 (+) True trnaa-ugc-127
XM_021565361.2 mRNA downstream 216374 25045692 ~ 25090054 (+) False mapta
TU1549230 other upstream 42652 24764639 ~ 24783512 (+) True dcakd
TU1549200 other upstream 142245 24681414 ~ 24683919 (+) False G1355273
TU1549194 other upstream 145049 24670599 ~ 24681115 (+) True LOC110491698
TU1549199 other upstream 145445 24670439 ~ 24680719 (+) False LOC110491698
TU1548560 other upstream 736130 24085708 ~ 24090034 (+) True G1354681
TU1550905 other downstream 1247223 26076541 ~ 26089383 (+) True znf281b
TU1551395 other downstream 1475633 26304951 ~ 26314801 (+) False mpp3b
TU1551392 other downstream 1477174 26306492 ~ 26314801 (+) False mpp3b
TU1551396 other downstream 1482378 26311696 ~ 26314801 (+) False mpp3b
TU1551398 other downstream 1482378 26311696 ~ 26314801 (+) True mpp3b

Expression Profile