RNA id: TU1549313


Basic Information

Item Value
RNA id TU1549313
length 2302
lncRNA type read_through
GC content 0.41
exon number 7
gene id ifn5
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 24889101 ~ 24897741 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGAAATTGAAGCTGAATTCTATGATTTTGAATATTGTACATTAATTATTGAATGTATACATTGAATTTGTATttatcatgtttttttttctctcttaaaCATAGGGTGGGGAGTTTACTACAGACAGTGTGGACGTACCTTTCCCAGAGGACCTGTACGAGCAAGCTGAATATTTACCAACTGATGACACAATTTGGTTCATCCTCCAAACCCTTGACAAGATCGCTGAGCTGTTTGATGGAGAACTAAACTCTGTCTGGGATGAGAAGAAAGTGGAGATCTTCCTCAATGTTCTCACCAGtcagtctgatggccttcagTCATGTGTTAGGGCCCAGAAAAAAAATAGCAAGAATCTGCAAATGTACTTCAAGAGGCTGAACAACCACGTCCTTAAAAGAATGGCATACAGTGCTCATGCATGGGAGCTGGTCAGGAAAGAGGTTAGGACACATCTGAGGAGGCTGGTTCTTCTGGGTTCAGCTACAGAAAACAGAATCTAAACTCAGCAACGCAATAATTATCGTCACGTATGAGTGACGTCATGTATTTCGCCTGtttctttgtatttttttatgataTGTTTATTGATTCCACATGgaaatgttttttaattttttttgtctGGTTTTAAATCTATTTATTTATTGGGTTATTTATTAACTTTTATTTATTATGTTGATGATTGCTGGATACATTTTTATACACAAAATTACTGTAGATGTATGCTTTTACCTGCTACTTCATTAAATGCATTTTTGACTACATATGGATTTGGCAATCACTGTTTAACAGTATATGGTATAGTAATAGTTTTCATAACAACAATAGAGCTTAGGCATTGtgatgtttttgaaagaaatgaCAGCTCTAGACAAAAACAACTTTCTCTCGGgacaaattgtttttttttgtctttggaCATTTAAGGCAAAGTCCACTTTACAATGCTGCCATATCATAGTACAGGCAAGAGTATAACATTATTAGAAATCAGCAATGGATGGCCTACATATTTATCCAGGCCACATGTCCACTTAACAAAACACCCACATTGATACAATTTGAAGGGGCGCGATCAGGTTGAGTATTTACAATTGAAACAGGAGAAGCTGAAAAGAGAAAGCCTTTCTATGGACAAGCCTCGTTAAACAAGCATTGCAATAACTAACTGTGTCGCATTCACCCTATTATATAACAATCAAAATAATAGCACCAACTCAAAACTCCTTTTATAGAGACACCAAATCAAGCACAACTGAAAAGAATACATGAACACATTTGAGAGAGGTGAAAAGAGAAAAACATGCGATTAGAAAAACCTGAATCAACAATCTGTTCCTCTACGTGCATCTTATATAGGAGGTATCGAAAAGAACACGCGCACATGTATTCTAAAAAAACATTACCCATATGGATGGATCTATAACATGAAGAAATAGTGGTCATCTGAACAAATCACTAAACATAAGATACATCCTGTAACACCATGGATGAGACATTGGCCTTTGAGTCCAGGGCCGTATTCATATTGGATCTCAGAGTAGGGGTGCAGATCTTTGATCAGATCCCCCTTGTCTATTCATTTTCATCGGAGGCAAAAACTGATCAtagatcagcagtcctactctgaaCGCTTAACGAATACGGGGCGGATAGGCATTGAGATGCAGCGGATGACAGGAGAGCTCAATCCCCATCTCCGCGCCGATGCAGCTCACTCCTGCTTCCAAGCTGCAGCAGCCTCTGCTGGCCCAGGCTGAGCATACACTGAGATGTCCTCATACAGATCACCACAATGCTCGATCTCCAAGCCCTCATAGATGTGATCATGTTCAGGTTCCTCATAAATGGCATCTTCCTTCTTCAACAGGGATTGGTGGCGTAGCAGTGGGGCAAGAGCAAACAGCGTTAAGAGTAACGCCTGGAGAAATATCAAAGCATCCTTCAGCTTGCTTCTCCTTTCTGCATTTTCACTGTTAGAGGGTcTGAGCACTTGTAGCTCTGTCCCTGGCCCCCAGGTGATGTTGTTAATCAGACAAAAGTAAAATCCGGTGTCCTCCGTCTCTACATGTCTGAGTTCGATCGAGGAATTTCGTAACACGCTCTTCTGCCTCACAGTGACCCGGTCCCCAACTATCTTCTTCCTAGTGGTGTTGTATTCTGAGGCCTTGTACCATTCCACCGTGGCAGGCTGGTTTCGGTCCGACACCACACAGAATATGGCCACAGTGCGATTGGTCTTCACCCCATAGAAACGAGGCTTCTGGGTGACCTGTAGGGGGCTGTTTAAAGCCACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1549304 lncRNA upstream 9334 24880828 ~ 24881093 (+) True G1355366
TU1549295 lncRNA upstream 17815 24872029 ~ 24872612 (+) True G1355357
TU1549294 lncRNA upstream 19139 24870960 ~ 24871288 (+) True G1355356
TU1549289 lncRNA upstream 20351 24865054 ~ 24870076 (+) False G1355352
TU1549290 lncRNA upstream 20351 24865054 ~ 24870076 (+) True G1355352
TU1549317 lncRNA downstream 4271 24901051 ~ 24901362 (+) True G1355377
TU1549335 lncRNA downstream 42008 24938788 ~ 24939064 (+) True G1355394
TU1549379 lncRNA downstream 104859 25001639 ~ 25002613 (+) True G1355435
TU1549387 lncRNA downstream 114232 25011012 ~ 25011482 (+) True G1355443
TU1549390 lncRNA downstream 119438 25016218 ~ 25016540 (+) True G1355446
XM_021567359.2 mRNA upstream 29297 24857512 ~ 24861130 (+) True ccr10
XM_036946592.1 mRNA upstream 61109 24826163 ~ 24829318 (+) False LOC110491705
trnaa-ugc-127 mRNA downstream 134549 25031329 ~ 25031399 (+) True trnaa-ugc-127
XM_021565361.2 mRNA downstream 148912 25045692 ~ 25090054 (+) False mapta
XM_021565371.2 mRNA downstream 148976 25045756 ~ 25090054 (+) False mapta
XM_021565380.2 mRNA downstream 148976 25045756 ~ 25090119 (+) False mapta
XM_021565353.2 mRNA downstream 148976 25045756 ~ 25092985 (+) False mapta
TU1549230 other upstream 106915 24764639 ~ 24783512 (+) True dcakd
TU1549200 other upstream 206508 24681414 ~ 24683919 (+) False G1355273
TU1549194 other upstream 209312 24670599 ~ 24681115 (+) True LOC110491698
TU1549199 other upstream 209708 24670439 ~ 24680719 (+) False LOC110491698
TU1548560 other upstream 800393 24085708 ~ 24090034 (+) True G1354681
TU1550905 other downstream 1179761 26076541 ~ 26089383 (+) True znf281b
TU1551395 other downstream 1408171 26304951 ~ 26314801 (+) False mpp3b
TU1551392 other downstream 1409712 26306492 ~ 26314801 (+) False mpp3b
TU1551396 other downstream 1414916 26311696 ~ 26314801 (+) False mpp3b
TU1551398 other downstream 1414916 26311696 ~ 26314801 (+) True mpp3b

Expression Profile