RNA id: XM_021565379.2


Basic Information

Item Value
RNA id XM_021565379.2
length 4254
RNA type mRNA
GC content 0.45
exon number 12
gene id mapta
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 25045692 ~ 25092985 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AgagccaggcagacagacacttcGAGACACCATCACAAATCTGCTGCTCTCTGGCGACTGCCTCCCGTTATGGCATCTTGGTTAACTGCGTCTGACGACTGTGCGCTCTGTGAACAactgtgcagctgtagaaacaaCCACACTGTCTGCACACAGCCTGAACCTGACTTGCTATGGATCAACACCAGGACTATATGAACAACGCCCCTAACACCTACAGCTACAACTCCGGGGACACCATGAGCGCTTCCTTAGCCGGCATGACCATCAACGACCTGCATCACCAGGAGAACGGGGTCCAGCTGGGGCACAGGAGCCCAGGGGAAGGCCCCATGAAAGCTCAAGCAAAGATTGAAAACGACAATGCTGATAAGAAGACTTTGGGTGGTGCTAGGCCACAGGCCCCCGGAACCAAGATTCCCGCCAAAACCCCAGCTCCagCAAGCGGCAAGAACAAAGACAACACCAGTGGACAGAGCAGCCCTGGTACTCCCAAGTCTCCCTCCAGCAAGACTCTTCCCGGAAAGCCCTTGGCTGTGGCCACAAACCAGGTGAAAAAGGTTGCGGTGGTGCGCACCCCACCCAAGTCTCCTGGCTCTCTCAAGAGCCGCGCCCCTGCACCCCTCACCGCAGCGGCCCCCTTGCCGGACCTGAAGAACGTCAGGTCCAAGATCGGCTCCACAGACAACATCAAGCACCAGCCTGGAGGAGGAAGGGTACAAATAATTGAAAAGAAGATCGACTTAAGCAATGTGCAGTCTAAGTGTGGCTCCAAAGACAATATCAAACATACACCCGGAGGTGGAAATGTCCAAATCCTCGAGAAGAAGTTGGACGTAAGCAATGTCCAGGCTCGTTGTGGATCCAAAGCCAACCTGAATCACACTCCTGGAGGAGGCAGGGTGCAAATACTAGAAAAGAAGGTGGACGTAAGCAATGTCCAGTCTCGCTGTGGCTCCAAAGATAATATCAAACATACACCCGGAGGAGGCAATGTTCAAATAGTCCACAAAAAGATTGACCTGAGCAATGTTAAATCAAAATGTGGTTCTACAGCCAACATCCACCACAAGCCAGGTGGTGGGAATGTTGAGATCAAATCTGAGAAATTGGATTTCAAGGTCCAATCAAAGATCGGCTCCATGGACAACATTGGACACGTGGCCGGAGGTGGACAGAGGAGGATTGAGAGCCACAAGCTGACGTTCCGTGAGACGGCCAAGGCACGCACTGACCACGGGGCCGAGATTATCTCCCTGGAAGACGACCCCCTGTCCCACCAGCTCAGTACCTTGTCCTCCTCCGGCTCCATCAACATGGCTGACTCACCGCAGCTCTCCACACTCGCTGACCAGGTATCTGCCTCTCTGGCCAGCCAAGGCTTGTGATTGGCTTGGTGGCACACGATGGCCGACCGGAAGTCTCCTGACCGACCACACTACTTTGACCGCCCACGTCAGAGGAGTCATGACGCCTGTCGCCTTCCTCCTCCTTTTCACGGGACTTTTTTAGCTATACCCATCACTGTTTCTCTTCCATCACCGACTGTTCTTCTTCATGATGCATTTATTGTTAGAAAAgaggtctttaaaaaaaaaaaagagattcaAGTCGGTCAAGTTAGATGATTTAATTTCTCTCTTGATCTATTTTTGTTGTCATCATTTGTACCGGTTGTATAAATGGCCCTTTTTAAGAGTTTAAAGAGAACAAACATCCAAACAAACCCAGAATCCTACAAGTGTTTCTGGACATTTTATTTGAACTTTGAACCCATATTTAATTCACTTTAACTCGATAAATCATTTTACTGTCCCAATGACTGCGATTCGAAGCCCTTATTTTACAAATGTCAATTTTTGATGTGCAAATGATCTGTGATGGCTGTCTCCTGAATGGCTTTTTGATACATGGAAAACAAGAGGTTTGGGAGAAGTGGGCCCCCCCCTTCTACAATGTGTTGAACATAAGAAAACACATCCTCCATTTACGGGGTAGTATGAGGCAAAGAAGTGAGGAAAGGTGGGCTCATGTAGCAAAAGCTCTCATTCAGACAGTAAAATGCTTTTAGACCTCCCCAACTTGCTGTCTGCTTTGGTTGCCGCTATACACTGCATACCAAGGTAGTATAGTTCAGAGGTAAACATTTTCCTTCATGGACAAAAGAAGAGGGATACAGAATGTTTAGCGTAGAAACCTTGGTTTGTGTTGGGCACACACTTTTCTATTTGTATTCTGTGGATATGACATGTATTTGATATGGAAACATTTGTATCGGGCCTGCTACTGTCAGTGTTAATTTATTTTCAATATTCTGTTATGGCTCTATTGTAAATGCGCTTCAGCTTTTGTCTTATGCGGTGTGGCAGTTTACATTTAACATTATATAGGCTACTAGTGACAAAATATTTGTTAATGTTTAAAGATGACATGAATTCGAGGGGAATACTGAATACTGAATGACTAAATTAACAGGCTTAGCTATGCCAGGCAAATTGTCTAACCAATTATGGGTTGTGTCGTTTAATGTAAGACACGTAATTTCACTGAACTTCTCACTAATTTGGCTTCAGATCACGCAGAAAAAATTTGCTTGATACTCAGCAATATGACATCATCATTCAGTGGGGCAACTTCCTGCTTACACACAATTCTGCCCGACTACATTGCAGACGCCTGCCAAATCTCACAATGCTTGGATTGGTGTTAACTATCAGCTAAACACATCATATGATTTAGCAATCTGGTGTCCGACTGCACAGTTGATGATGTGGCACGCAAACATTGGTTGATGCAATCCAACGCCTGAGCAGGCGAGCACAACCAATATAGTGCGTTCAAGAAAATCAGAAAAGAACAGACTGGGAAGAATCTTGACGTCAGTAATCTTCAGGTCAGACAAGTCGGAGCTCTAGGATGATGCCCGAGATTCTGAATtgtaattccgagttggatgaccctccgttcaaaactatttttcccagtGAGAGCTGTTTTTCCCCCagagttctcagttgtcttgagTGCACTAAAGTCGGAGATTTCCTTGTTCAGAGTTGGCTGGAACGCACCAAAAGCAGCAACTCCAGTCGCCAAGACTGCCCCTATTGGTTCTTTCAGGTTTGCACTCTCCCTTGAGGTATGTCCACATTGGGAGGAGCCAATTTGCTGTTTTGGCAGATTAGAATTATGTTAATTGATTTTTGTAAACAGGAAGTTGCCCCGCTGTATGTGATGATGCCATGTAGCTCACTCTACTTTTTACCCTAAAATGTTTAACCATCTGTCACATGGAGAAACGTACCTTTCGGATATATTTAGATTTAGGCCTACTAATTGCCTGCGCACGAGCATGCTCGTCACACTTTCCTCAACTTGTCTCACGGGTTATAAAGCTATGGTCCTTTCCCTGGAACGTATACGACGGAAATGTACGAAACTCTCTCACACGCTCAAATGGATAAGTGTTTTATCCTCATGTAAACCCACCGTGGTTCACCAATCACCACTATATTATTCTCGTCATTGATTTGCCTTCATAACTCCGAGCCAAAATACCATCTTAAAAGTCCTTGCATGCATTTCATGTAAGAGTAAGCGGTCTGCCTCTCCTTTTACACTGTGCTTTCATTGTACCTCCTGTAACATCTGCTTTGTCTATATAAGCATACATGTAGGTATTAGTGCGAGGGAATAGAACCCAAAAGGCAACCCTTTCCTTTATGTGGAGATTAAGGCGCATTGATAACATTATACGActtcccagtgtgtgtgtttgacttgTATTGACAATATATATTTCTCGGGAACTGGCCAGGGCATTTGAGAAAAGGTGTGCTTGCAACACTACAATCTGCATGTTAAACTGTTGGTTACTTTTCATCATAATGGACAACATTTGTTTGAATGTGTTAAATGGGTATGTGCACTGTGTTCTGTGTGGATTACTGAGACTAATATGTTGGAGGGCAGGTGCTGATAAATTCCAGTACTAACATTATCAGTACTCAAGGGGAAAAGTTGGGGAaaggtattttttttgtttttttgggtGGTCCTCTCCACTGGCCTCTGTTCTGAGGTCAATGGAAAGAGTTTGCAGTAACACATTTCATCGTCATCCTTTTGTTATTTTTGCCGCTGTACAGTTGTGTGGAAAATGTGATTGTTGATATTGTTATTGTGCATTTTATCAATAACTGGTGTATGATGATTCTTGTCGCTGTGAATTTAAAAATAAACTGTTAAACCATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1549393 lncRNA upstream 21744 25023754 ~ 25024012 (+) True G1355449
TU1549390 lncRNA upstream 29216 25016218 ~ 25016540 (+) True G1355446
TU1549387 lncRNA upstream 34274 25011012 ~ 25011482 (+) True G1355443
TU1549379 lncRNA upstream 43143 25001639 ~ 25002613 (+) True G1355435
TU1549335 lncRNA upstream 106692 24938788 ~ 24939064 (+) True G1355394
TU1549446 lncRNA downstream 21200 25114185 ~ 25114792 (+) True G1355498
TU1549448 lncRNA downstream 23605 25116590 ~ 25116821 (+) True G1355500
TU1549451 lncRNA downstream 26291 25119276 ~ 25119698 (+) True G1355503
TU1549475 lncRNA downstream 63604 25156589 ~ 25156825 (+) True G1355526
TU1549476 lncRNA downstream 64242 25157227 ~ 25158048 (+) True G1355527
trnaa-ugc-127 mRNA upstream 14357 25031329 ~ 25031399 (+) True trnaa-ugc-127
XM_021564390.2 mRNA upstream 153085 24889101 ~ 24892671 (+) False ifn5
NM_001159339.1 mRNA upstream 153085 24890022 ~ 24892671 (+) False ifn5
XM_021567359.2 mRNA upstream 184626 24857512 ~ 24861130 (+) True ccr10
XM_036946591.1 mRNA upstream 216438 24826164 ~ 24829318 (+) True LOC110491705
XM_021565388.2 mRNA downstream 72401 25165386 ~ 25191533 (+) True LOC110491714
XM_021565390.2 mRNA downstream 109436 25202421 ~ 25213711 (+) False zdhhc6
XM_021565392.2 mRNA downstream 109436 25202421 ~ 25213711 (+) False zdhhc6
XM_021565391.2 mRNA downstream 109596 25202581 ~ 25213711 (+) True zdhhc6
XM_036945878.1 mRNA downstream 237429 25330414 ~ 25367122 (+) True gucy2g
TU1549230 other upstream 262244 24764639 ~ 24783512 (+) True dcakd
TU1549200 other upstream 361837 24681414 ~ 24683919 (+) False G1355273
TU1549194 other upstream 364641 24670599 ~ 24681115 (+) True LOC110491698
TU1549199 other upstream 365037 24670439 ~ 24680719 (+) False LOC110491698
TU1548560 other upstream 955722 24085708 ~ 24090034 (+) True G1354681
TU1550905 other downstream 983556 26076541 ~ 26089383 (+) True znf281b
TU1551395 other downstream 1211966 26304951 ~ 26314801 (+) False mpp3b
TU1551392 other downstream 1213507 26306492 ~ 26314801 (+) False mpp3b
TU1551396 other downstream 1218711 26311696 ~ 26314801 (+) False mpp3b
TU1551398 other downstream 1218711 26311696 ~ 26314801 (+) True mpp3b

Expression Profile