RNA id: XM_021565392.2


Basic Information

Item Value
RNA id XM_021565392.2
length 2769
RNA type mRNA
GC content 0.48
exon number 11
gene id zdhhc6
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 25202421 ~ 25213711 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAAAAAGTAAGTGCTTCTGTTCAAAAAGTAAGTGCTTCCGAAAATACGTTTATTTTGAAATGCATGGAAAAAAACGTTGACGCCAGGTCCCACGGTAATCTCGCGATAGACTGGAACACGGCTTAAATCAAGGAAGTCGCAAGATGGAGAACTTGCATCTCTCACAGGGATAGTGCAGTCTCCCGTGCTGTCAAAGGATGCCGCTCATCGCCAGGAACACAAAGAACTCTGGGACACGGACTGCCTCTGTAACTTGCAACCCAGCCGGTTGCTGGGTGTTCAGAAGACGAGAGAAAAGATGCCCGTTGTCTTCATTGTCTGTGCCAGATAGTAGAGAGAAGCAGTGCGTCTAACCTCTGTGTTCGACAAACTCCCCAACCACAACGCCTTTAAAAccttaacacaacacacacaaaaacaaccaAAAAAAACTATGAACTTTCTTACAGCCCTCGTGACGTTTGAGAACATCCATGAGGTCCGGAGGTTGTGTCACTGGGGCCCAGTGATAGCCCTGACAGTCATCGCCGTGTGCTCCTCCATGGCCATATTAGACTCCATTATCTGGTACTGGCCATTGGACACCACAGGAGGGAGCTTCAACTTCATCATGCTCATCAACTGGTCCGTGCTCATTCTCTACAACTACTTCAACGCCATGTTCGTGGGCCCTGGTTACATCCCCCTTGGCTGGAAACCAGAGAAGGAAGAAGACACCAAGTACCTTCAGTTCTGCAGAATGTGCCAAGGCTACAAGGCCCCGAGATCCCACCATTGCCGCAAGTGCAACAGGTGTGTGATGAAGATGGATCACCACTGCCCGTGGATCAACAACTGCTGCGGCCACCAGAACCACGCCTACTTCACCAGTTTCCTGCTGTTGGCGCCTCTCGGCTGCTCGCACGCCGCTTTCATCTTCATCATGACCATGTACACACAGCTCTACGAGAGGATATCCTTTGGCTGGAGTACCGTGAAGATCGACATGAGCGCCGTCAGACGGTTTCAACCCATCATGCCGTTCAGCGTACCCGCCTTCGCTGCCACTCTCTTTGCCTTAGGGCTGGCACTGGGCACCACCATAGCCGTTGGCATGTTGTTCTTCATACAGATGAAAGTCATCCTTCGAAACAAGACCTCCGTTGAGGCCTGGATCGAGGAAAAGGCCAAAGACAGAATTCAGTACTACCAAACGGGGGAAGAGTTTATCTTCCCCTACGACCTGGGCCGGCGCTGGGAGAACTTCAAACAGGTGTTCACCTGGTCAGGGAGCCCAGAGGGCGACGGCATTCAATGGCCCATCCACGCCAAGTGTCACCAGCACACCTTAACCATTGAGCAACTGAAACAAAAAGCTGACAAGCGGGTGAGAAGTATTCAGTATCGGGTAGTGGAGGACTACAACGGAGCCTGCTGCCCACTGAGCAAGGGCTTCAACACCTTCTTCAGGACTCCCTGCACCGAGGAGCCCCGCATCGGCCTCCACAAGGGGGAGACCATCCTTGCCACCCGGGGGACCAAATGGTGGATGTATGGGGACAAAGTGCTGGATGACGAGCAGACTAAAGCTGGAGCTCGCCTGCGGGGTTGGTTTCCCCGCCGGTGCGTAGAGAAGTGCCATTACGACACAGCAGTGACTAGTGCAATGACCAGTGAGACCAGCAGTGAGGAGAAGAAAGTGAAATAAGTTTATGACATTCAGATTTGCCACAAGGCAGGGAGTGGTATGACGCCCAATTCCTGGAGGTCTGCATTGTCTCTTGTCTTTCTCCTTGGTAATATGTAATACTATATGCCACTGAACAGATGATTTTTTAATTCAAGCGAAGTACAGTGAGTGATGTGTATGTGTTCCCTGTGGAAAATGAACCCGCTACCTCGGTGCCACCAGCGCCATGcccttaccaactgagccaccgAGGTCTTTGTGTGTCTTTCAATGGGTGAATCGTAATTGTATTTTTGCGCTCTGGGCTTTGAATACTGTTGAGACTCGCCCCCAGTCGCTCACCAACTAAGGAGTTCACAATCCCGGGATGTGTTTTGATAGTCAATTACTTGGCAAAGTGACTTTCACCCTTCGTCTGTACTGATCTGGAAACGTAGGCTCAATGAGAGCAATATGGTGAATGCTTACAGACTTTTTTTCATTCACCTGTCAAAATCACATCAGTGCAGAtaaggagaggaagccactttagCCTATTGAAATACATCCCTGCTTTCCCAGGTCAAAATCGGATACTAGTTACAAGGAAACATTTTCATTTTAGCAGACACTATAAttcagagcgatttacaggagcagTTAGGGTCaagtgcattgctcaagggcactgacagttttcacctagtcagctcggcgattcaaaccagcgacctttgggtgactggcccaatgctctgaaccgccaggctacctgcatACGCCCCTGGCCTCCAGGAGTTTAGTTTGATACCGCTGCCATAGAAAGAGACAACTATAGTCTTAAACAATAGGGATTTCATTTGTTTAGGAGTTGGGCCTTTTACTTGAATCCGCTGTTTTATAATTTTTCCTGATGTCCTTTGCCGATTATACAATTATGCAAATTCCTCTGCCCAGCTTTAACCCAGGGCTTCGTCATGCAATTTCTTCTCTGTATTCTTTGTACAGCCAAAAGAAAATGCTAActtttgttttaatttttttaattgttCTTATTATTTTTGTAAAACACTGTCACCCTCAAAGTgaataaaaaaatgaaacatgTCCTTCCCTATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1549476 lncRNA upstream 44373 25157227 ~ 25158048 (+) True G1355527
TU1549475 lncRNA upstream 45596 25156589 ~ 25156825 (+) True G1355526
TU1549451 lncRNA upstream 82723 25119276 ~ 25119698 (+) True G1355503
TU1549448 lncRNA upstream 85600 25116590 ~ 25116821 (+) True G1355500
TU1549446 lncRNA upstream 87629 25114185 ~ 25114792 (+) True G1355498
TU1549503 lncRNA downstream 3079 25216790 ~ 25226546 (+) False G1355552
TU1549504 lncRNA downstream 3079 25216790 ~ 25223688 (+) False G1355552
TU1549505 lncRNA downstream 7025 25220736 ~ 25225239 (+) True G1355552
TU1549528 lncRNA downstream 47522 25261233 ~ 25261451 (+) True G1355575
TU1550085 lncRNA downstream 76994 25290705 ~ 25290936 (+) True G1356094
XM_021565388.2 mRNA upstream 10888 25165386 ~ 25191533 (+) True LOC110491714
XM_021565358.2 mRNA upstream 109436 25059457 ~ 25092985 (+) False mapta
XM_036945878.1 mRNA downstream 116703 25330414 ~ 25367122 (+) True gucy2g
XM_021565397.2 mRNA downstream 220399 25434110 ~ 25527003 (+) False plxdc1
XM_021565398.2 mRNA downstream 220402 25434113 ~ 25527003 (+) True plxdc1
XM_036946599.1 mRNA downstream 343556 25557267 ~ 25592916 (+) True LOC110491720
XM_036946602.1 mRNA downstream 417500 25631211 ~ 25702729 (+) False arhgap23b
TU1549230 other upstream 418909 24764639 ~ 24783512 (+) True dcakd
TU1549200 other upstream 518502 24681414 ~ 24683919 (+) False G1355273
TU1549194 other upstream 521306 24670599 ~ 24681115 (+) True LOC110491698
TU1549199 other upstream 521702 24670439 ~ 24680719 (+) False LOC110491698
TU1548560 other upstream 1112387 24085708 ~ 24090034 (+) True G1354681
TU1550905 other downstream 862830 26076541 ~ 26089383 (+) True znf281b
TU1551395 other downstream 1091240 26304951 ~ 26314801 (+) False mpp3b
TU1551392 other downstream 1092781 26306492 ~ 26314801 (+) False mpp3b
TU1551396 other downstream 1097985 26311696 ~ 26314801 (+) False mpp3b
TU1551398 other downstream 1097985 26311696 ~ 26314801 (+) True mpp3b

Expression Profile