RNA id: XM_036946599.1


Basic Information

Item Value
RNA id XM_036946599.1
length 2666
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC110491720
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 25557267 ~ 25592916 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTCTACATCATTACAGCGGTACCGCCTTCCCTCTCCGCTCTCCGAAAATAAGCCTCTCCCTCTCGCCTCATGACCGAGTTTTCATTTAATCAATTTCGTGAACGCGCGCGCCTAGTAAGAATTGTGCGCTGTCAAAAAAACTGACTATTGGAATTTAGAATATCTGCCGATTTAGCTGACGCTATTTTGGATAGGTTCACTTCAATAGGTCTACACCAGAATATTAATTTCATTGCGTCCCGTTATTTCTGAAAGAGGATTTTCCCTTTCGCCATGAATCCGTTATGTGGAAGATGCAGTAAAATGGTTTACCCCACGGAAAAAGTGAATTGTCTAGACAAGTACTGGCATAAAGGATGTTTCAGCTGCGAGGTGTGCAAATTGACCCTTAACATGAAGAATTACCAAGGCTTCGACAAGAAACCCTACTGCAGTATGCACTACCCGAAGAGCTCCTTCACCTCCGTGATTGACACCCCAGAGAACCTGCGACTCAAACAGCAGAGCATGTTGAACAGCCAGGCGCTGTACAAAGAGGAGTTTGAGAAGAACAAGGGGAAAGGCTTCAGCGTGGTGGCCGACACACCGGAGATGCAGAGAGTGAAGAAAACGCAAGACCAGATCAGCAACaTAAAGTATCATGAGGAATTTGAGAAGAGCAGAATTAGTAGTGATGCCCCACCCCCAGTGAATGCCAGTCAAGATCCGCAGCCGCAGCCGCAGCCAGCCATCCCTCAGACCTACAGCTCCCAGCCGGATCCTGTGTCTGttccctctgctgctgctgtacCACCACCTAGTGGAGGGAAGCGCTACCGGGCTCTGTACAGCTACACGGCTGCCGACGCCGACGAGGTGTCTCTCCAGGAGGGCGACCTGATTGCAGACGTACAACAGATAGATGAGGGATGGATGTACGGCCGCATCGAACGCACCGGGCAACAGGGCATGCTACCTGCTAACTACGTCCAACCCCTCTGAAACCCTGGGCCTCCTTCAATTGGTTGAAACATTCAGAACACTGCAGACAGAAATGTAAGcatgggttgtgttcattaggcaccaaaggGAAGAAAATGGATTGAAAGAAGGTGTGACTGCCCGGacgtgtccaataagaaacgctcaATTTACTTTTTCATTGCAAAGCGTTTAAAACCCTTTGTTGCATGTCGTAATGAACAAAACCCAGGTTGAAGGTTAGTGTCCTCTCTAGGTTGTActtttctatctgcaacgttcagAGTTTCACTCCACTGCTGAACTTAGTCCAGGAGAAATGGGGAgatgaaaaggggggggggggggggtaaatgtgGGAAACAAGTCACAGcctaagagagggagaggacggaAGAAAGAGAAAAGGAAACAACTAGTGCCATTAAGACTTGAATATTGTCTCTGACCATGTTTTTGCTCATATGGTCTATTATTCATGGTTTTTGAAAAGTTAATTGATTTAGCTAATAAAGCTTCTCACTGCCATTTTCAGTACACAGTCCACTATCGGACAGCTCAATGCCCTAATACTACTACACCTAAATGGTTTTAAATGTCTAGGTCTTCCCCGTGGTTTATTTGTAATGACATAACGACCCCAGTGAGGCCATACCATATTAAGCTTGCATCTATTAGGCAGTGTACAATATATAGAGTTCCCCAAAATGTATTAATTATTCCGAAATTTTGCATGAAGTTGGAAAGTTTAGGATCGGCTTCCAGTTGACAGTTGTACATTTTAGGACAGATATATTTCTATAATTTAGAACCTAGAGGGCTTCCGTGTTAGTACTTGTTAGCAAACTGTATTTACTAACTAGTACCTGTTAGAATACCTACCGGTCTGTATCTACTGATTACAATAGTTACACTAATCAGCAGCACTTGGTTTGGGCTAGGCAGAAACAGGTGTGCACAATTATCAATcaatggtattttattaggatccccattagctgttgtgaaagcagcagctactcttcctggggtccacatcaAACATAAAATAGAACATTAATAAAACAAGAACAGAACTAATGATGTCCTAAAAGAGCCGTTTAAAATATCACCGCCGTGCATACGAAAAAATACTTAATTGGTGGTGTGatacggcttgacagaaatgaaGAATTCAAAAATGTCACCATTCACAGGGATTCAAGGGTGTTTTATACGTTTGAAAAATTAAAAAAGGTATGATTTATATTATTCTATTCTAAGTTTTGCAATGAAGCATTCAAATTCATTGGGGTAAAACTGAATATTTGAGAATTTGTCTCATTGTTTTTCTTACATACACAAAGCAGCCTATGTGCCAGAATGTCTCTGCTTCTGCTTTAGAAAGCAAACTTGACTTGAATGCAACAATGTCAAATCTAGCCAATCTTGCAAGCGTTCTTTGAAATCTTGTGCCAGCCAATGTGTAGCTGTCAAGAGGGACTACTTCAATAGCTGCATTTAGACagtcagcccaattctgatctttttttcactaattggccGTTCGattagaattgggctgcctgtctaatcACAGCCTATGTAGCTAGCATTGTTGAGGTACCCAGTCGAACCAAAGAGTACGCTTTGAATAGAGCACATCCAACAATATTTTAAGTCAGCAACATTTTATTAATCAACATTAAAAGAAAATACAACCTTA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1550102 lncRNA upstream 252742 25304268 ~ 25304525 (+) True G1356111
TU1550085 lncRNA upstream 266331 25290705 ~ 25290936 (+) True G1356094
TU1549528 lncRNA upstream 295816 25261233 ~ 25261451 (+) True G1355575
TU1549505 lncRNA upstream 332028 25220736 ~ 25225239 (+) True G1355552
TU1549504 lncRNA upstream 333579 25216790 ~ 25223688 (+) False G1355552
TU1550282 lncRNA downstream 11329 25604245 ~ 25604577 (+) True G1356272
TU1550414 lncRNA downstream 190930 25783846 ~ 25784196 (+) True G1356395
TU1550719 lncRNA downstream 194797 25787713 ~ 25787971 (+) True G1356665
TU1550817 lncRNA downstream 360976 25953892 ~ 25954148 (+) True G1356754
TU1550818 lncRNA downstream 361919 25954835 ~ 25955064 (+) True G1356755
XM_021565397.2 mRNA upstream 30264 25434110 ~ 25527003 (+) False plxdc1
XM_021565398.2 mRNA upstream 30264 25434113 ~ 25527003 (+) True plxdc1
XM_036945878.1 mRNA upstream 190145 25330414 ~ 25367122 (+) True gucy2g
XM_021565390.2 mRNA upstream 343556 25202421 ~ 25213711 (+) False zdhhc6
XM_021565392.2 mRNA upstream 343556 25202421 ~ 25213711 (+) False zdhhc6
XM_036946602.1 mRNA downstream 38295 25631211 ~ 25702729 (+) False arhgap23b
XR_005036486.1 mRNA downstream 61760 25654676 ~ 25699835 (+) False arhgap23b
XM_036946604.1 mRNA downstream 61760 25654676 ~ 25699954 (+) False arhgap23b
XM_036946600.1 mRNA downstream 61763 25654679 ~ 25702729 (+) False arhgap23b
XM_036946601.1 mRNA downstream 61763 25654679 ~ 25702729 (+) False arhgap23b
TU1549230 other upstream 773755 24764639 ~ 24783512 (+) True dcakd
TU1549200 other upstream 873348 24681414 ~ 24683919 (+) False G1355273
TU1549194 other upstream 876152 24670599 ~ 24681115 (+) True LOC110491698
TU1549199 other upstream 876548 24670439 ~ 24680719 (+) False LOC110491698
TU1548560 other upstream 1467233 24085708 ~ 24090034 (+) True G1354681
TU1550905 other downstream 483625 26076541 ~ 26089383 (+) True znf281b
TU1551395 other downstream 712035 26304951 ~ 26314801 (+) False mpp3b
TU1551392 other downstream 713576 26306492 ~ 26314801 (+) False mpp3b
TU1551396 other downstream 718780 26311696 ~ 26314801 (+) False mpp3b
TU1551398 other downstream 718780 26311696 ~ 26314801 (+) True mpp3b

Expression Profile