RNA id: XR_005036486.1


Basic Information

Item Value
RNA id XR_005036486.1
length 4199
RNA type mRNA
GC content 0.58
exon number 25
gene id arhgap23b
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 25631211 ~ 25702729 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGCGCGTATGTGGGAACGCGGTAACACCGAAATGGGAGATTGACGTCGAAAGAATCAAAACCCGAGGGAGGGGACATTTCTACCTATCCACACTACGGGGAGGGAGAGCAAAGCCTACCTGTGTGATAGAGTCGGCATAATGTCGACAGTAAAATAGTTTACAagtatttgtttttttgtttttgtttacaacAACACCGTGACAACTTTTGAGGCAGAAACGCTCCGAGCTGCCCAATGAATGGAGTTACCTTTTGCCTGGTTGGAATTCCACCTCGCTCTGGAAACGAAGCTAAAGGGCGGAATGATGGCGCCCTGTCATCCAATGAGAACACTCGGTCGCTGTCGTCGGGCGAGGTTGAGGGCGTGGCGTGGCAGGGCCCTCGTACGGTGCTCCTGCAGAAGAACTCCCAGGGCTTCGGCTTCACGCTGCGCCACTTCATTGTGTACCCGCCAGAGTCCTCCCTCCACAATAACCTCAAGGATGAGGAGAATGGAAACGGCAACGGAAAAGGTTGTCAAAGGGGTCGTCTGGAGCCCATGGACACCATCTTTGTAAAGAGTGTGAGGGAGAAAAGCCCCGCCCACCAAGCTGGCCTGTGTACAGGGGACAGACTGGTAAAGGTGAATGGGGAAAGTGTATTAGGGAAGACCTACTCTCAGGTGATCGCGTTGATCCAGAACAGCGAGAATGTTCTGGAGCTCTGCATCATGCCAAAAGATGAGGATGTGTTGCAGTTGGTAAGTGCGTACTCTCAGGATGCCTACCTGAGAGGAAATGAGCCATACACGGGAGGGGCGCAGCATATCCCCGACCCTCCCCCACTCTGCTACCCCCGTGCCAAGCCCACTTCCACGGCCCCTCTGCCACCCAACCACCAAAGCCCCCTGGACAACTGGCACTGCCGCCCCAGCCCTGTTAACCAGGCATCCTCCTTGGACAACCGCTCTGCCGCGGTTAACGTAACTCAGACCTCCGGCAGGCCCAGGGGTCCGGGAGAAAACGAGGAGGATGGCGGAGGCCATTTTAGCTCCTCGGCAGGACAAGAGGGAGATTGGCTGCCATCTTTGGGGCAGAACCGCGGGCGCTCGTCGTCGGCTGTCAGCGCACTGGATTTCCACTTTGCCAACCACAACGCCGCCATCGCCTCTGCAACCCTGCCCCACATGCCCGCCCGGAAGGGAAGTTTACCGGCTACGCGTGCCCACAGCGACGCCATGTGCCACCAGGCGCTGTCGGACTGGTACTACAGCCAGGCAGAGGCGGCCGAGCGCATGTCCCCTCGACACCGGAGCATTTCCCAGGATCGGTTAGCCGAGCTGGGGTTGGGCTTAGCGCTGGGGCCTGGTGGCGCTGGAGGTGCGGGGTCTAACTCTATGTCCTCCATGGCTCACAGAGACCACGGCGTTTCCCAAGAAACTCTGCTGCTCCACCACCAGGCAGCAGCCGCCTCCCACGATTCCTATTGGCTGGGAGGCTGGGGAGGAGTGTCCGGGCCAGGGAGCCGTTCGTGCTCCGAAAGCCTGCTGGCGGCGTACGCATCGTACGAACGCAACTACGGGCGCTCACAGGAGACGCTAGCCCAGGCGGCTGCGCTGGTGTCGCCGCACTGCGAGAGAGCCCCCGCCTGGCCGTCGCAGGGTGCCAAGGAGCAGGACAAGGACTTGGGAAACCACCACACGGTTACAGCCACAACTGCAGCCACACTGGCCACAGCCCCCTCCGTTGGTCGGCAGACCCAGCAGCAGCAGGTGGCTGAGCCCCAGACCCAGAGCAGGAGGTTGGAGGAAGAGGAGCTGGTGGGTTACAAGAGCTACAGCCCCTCCTTCTGCCGCAAGGCCAGCCACCTCCTCCAACAAGCCCACTCCTTCAGAGAACCCACCTACATCGGACCCCACCTCAACTGGGCACCCAGTGCCAAAACCAGCCCCTCAGACTGCGAGGGAGGCTGGATAGGAGGGGGGGTGGTAGTTCCTCGTCCTTCCTCCACCCCGGCCGTCATCCCTTCTTCGTCGGAGGATGAGAGAgtgctgggggaggagaggggggagtcgAGGGAGAcgctgtctcctctccctctgggcCAGGAGGTGGTGCTGAGGCAGAAGCCCCCTATGGGGCGTCGGACCCCCGTGCAGGCCCTCCGTCACCCCCTCTACGCCCTCCCAGTGGATTCGGCCGAGCCCCCCGTCGGGCTGCTGCCCTCCCCAAACAACCCCACTGCAGGGACACCCTCGCCCGTCTCTGGGGGTACCAGAATGGGGGACAGTCTAAGGAGGCCCAACGGTAGCCTGCAACCCCACCACAGCACACCCGACTCCCTGGCCTCCATTCCCTTTATAGATGACCCTATCAGCCCTAGCGCTGACCTACGTGCCCGCCACGTGCCCGCCTGCTCCGTGGTGTCCTCCTCCAGTGCCCCGTGCCCTCTTGTGTCCTCTTTGCCCTGTGCCCTCACCTCTAGTACCACTACTGTCTCCCctgtcaccctctcctcctctacctcccccctcGTCAAACTCCGCTCCCAGGACAGCAGCAGTATCAAAAGCCGCCGTTCCTCCTACCTGCTGGCCATTACCACGGAGCGCTCCAAGTCATGTGACGAGGGCCTCAACACCTTCCGGGAGGAAGGCCGTGTCTTCTCGAGACTACCAAAAAGGGTCAAGAGCTTTTTCACTGATGGGTCTCTGGAGAGTCTACGTGCTGCAGAGGAGGCGCGGTCGAAACGTCACTCCACCTCTGAGCTAGGGACCATCACCTTCAGTGACGTACGCAAGGACGGCTGGCTTCACTACAAACAGATCCTCACGGAGAAGGGAaaaAAGGTGGGCGGCGGCATGCGTCCGTGGAAGCACGTCTTCTCCGTGCTGCGCTCCCACTGCCTTTTGCTCTACAAAGACAAGCGGGAGGCGGTCCTCCACGGGGCGGGGGCGGGACCTGGCCACGGGGAGGACGAGCACCCTCCAATCAGCATCCGCGGCTGCCTGATTGACATTGCCTATAGCGAAACCAAGCGTAAGCACACTCTGAGGCTGACCACTCAGGACTTCTGTGAGTACCTGTTGCAGGCGGAGGACAGAGATGACATGCTGGGCTGGATCCGGGTCATCAGAGAGAACAGCAAGACAGACAACGAGGAGCTGGGTTTTTCCAGACAAGCTCTCATCAGCAAGAAGCTCAATGACTACAGGAAACAAACTACAACAGGCAATAAGCCAGACACCTCTCCCAGGGCCCATCGCATGATGCCCCCCTTCCTCCTGGCCAAGACAGACAACGCTTTCATGAACCGCTCCTCCAGCAAGGaTGAAAGCAAGGGTCCATGGGGTATCATCATGAAGAAAGCAAAGAAGACAGGCCCCAAGGTGTTTGGAGTGCGACTTGAGGACTGTCAACCTGCTGTTAACAACAAGtttGTCCCTCTGATTGTGGAGCTGTGCTGTGGGCTGGTGGAGAGCATGGGTCTGGAGTACACTGGCGTCTACAGGGTGCCGGGCAACAATGCCATGGTGTCCAACCTGCAGGAGCAGCTCAACAGGGGCCTGGAGATCAACATTactgaggagAGATGGCAGGACCTGAATGTGATCAGCAGTCTCCTCAAGTCCTTCTTTAGGAAACTCCCAGAACCCCTGTTCACTGATGACAAGTATAATGACTTTATTGATGCCAACCGGCTAGAGGACTCAGGGAACAGGCTGAAGAGCATGAAGAAACTGatcCATGATCTTCCAGACCACTATCACCACACTCTAAAGTTCCTGGTCTGTCATCTGAAGACAGTGGCGGATCACGCCGACAAGAACAAGATGGAGCCCAGGAACCTGGCTCTAGTGTTTGGTCCCACTCTGGTGCGTACCTCAGAGGACAACATGACCGACATGGTCACCCACATGCCCGACCGCTACAAGATCATCGAGACGCTCATCCTGCATCACGACTGGTTCTTCAGTGATGGAGAGGTGGATAAGGATGAAAAGGCACCTGTGGATATTAAGAGGGATATGCAACCGGTCCCCAACATCGATCACCTGCTCTCCAACATCGGGAGAACAGGGCTGCCTGGAAGTGAGGCTTCAGCTGAGCCTGTGGATCAACCTCTTCGGTAGGAGCAGGACTCTACCTccaacgtagtgtgtgtATTCCACCACCAGCGACTCACCTAAGGATAAGAAGTGCACATGGGGTTCCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1550282 lncRNA upstream 50099 25604245 ~ 25604577 (+) True G1356272
TU1550102 lncRNA upstream 350151 25304268 ~ 25304525 (+) True G1356111
TU1550085 lncRNA upstream 363740 25290705 ~ 25290936 (+) True G1356094
TU1549528 lncRNA upstream 393225 25261233 ~ 25261451 (+) True G1355575
TU1549505 lncRNA upstream 429437 25220736 ~ 25225239 (+) True G1355552
TU1550414 lncRNA downstream 84011 25783846 ~ 25784196 (+) True G1356395
TU1550719 lncRNA downstream 87878 25787713 ~ 25787971 (+) True G1356665
TU1550817 lncRNA downstream 254057 25953892 ~ 25954148 (+) True G1356754
TU1550818 lncRNA downstream 255000 25954835 ~ 25955064 (+) True G1356755
TU1550849 lncRNA downstream 304603 26004438 ~ 26069048 (+) True G1356780
XM_036946599.1 mRNA upstream 61760 25557267 ~ 25592916 (+) True LOC110491720
XM_021565397.2 mRNA upstream 127673 25434110 ~ 25527003 (+) False plxdc1
XM_021565398.2 mRNA upstream 127673 25434113 ~ 25527003 (+) True plxdc1
XM_036945878.1 mRNA upstream 287554 25330414 ~ 25367122 (+) True gucy2g
XM_021565391.2 mRNA upstream 440965 25202581 ~ 25213711 (+) True zdhhc6
XM_036946605.1 mRNA downstream 18473 25718308 ~ 25765325 (+) False plcd3b
XM_036946606.1 mRNA downstream 18473 25718308 ~ 25765325 (+) True plcd3b
XM_036946609.1 mRNA downstream 74835 25774670 ~ 25780246 (+) False nmt1b
XM_036946610.1 mRNA downstream 74835 25774670 ~ 25780246 (+) True nmt1b
XM_036946614.1 mRNA downstream 96138 25795973 ~ 25907006 (+) False svild
TU1549230 other upstream 871164 24764639 ~ 24783512 (+) True dcakd
TU1549200 other upstream 970757 24681414 ~ 24683919 (+) False G1355273
TU1549194 other upstream 973561 24670599 ~ 24681115 (+) True LOC110491698
TU1549199 other upstream 973957 24670439 ~ 24680719 (+) False LOC110491698
TU1548560 other upstream 1564642 24085708 ~ 24090034 (+) True G1354681
TU1550905 other downstream 376706 26076541 ~ 26089383 (+) True znf281b
TU1551395 other downstream 605116 26304951 ~ 26314801 (+) False mpp3b
TU1551392 other downstream 606657 26306492 ~ 26314801 (+) False mpp3b
TU1551396 other downstream 611861 26311696 ~ 26314801 (+) False mpp3b
TU1551398 other downstream 611861 26311696 ~ 26314801 (+) True mpp3b

Expression Profile