RNA id: XM_036946605.1


Basic Information

Item Value
RNA id XM_036946605.1
length 5739
RNA type mRNA
GC content 0.45
exon number 15
gene id plcd3b
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 25718308 ~ 25765325 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCGCTGCAGTCTTggagaaagctagctagctcagttACGAACTAGCCTACATGTTCTAGCAAGAACTTGATGCAGTCTAAAATCAAAAACAGTAAACTGTCTATAGTCTTTCGGCGGCCTTGAAAAGCTGAACTCGTTAAACAATAGGCgtatatagctagctaactaactaacgttagctagctagggataaccagaaagagggagagctcAAAGCGGCAGCGTCTTTGATCATGCTAGGCAACGGCAAGAAGCCCGTGAAGAATGGAGCCGGGACGTCCGAATCAAAGACTATCGACCCTCTTAAAAATTTAGGTGTAGAGGAAGATGAGGACGTGAAGGTGATGCTGAAAGGCTCCAGCATGGTGAAAGTACGCTCCCCACGTTGGCAGAGGAGACGTACGCTGAAGCTGCTGGACGATGGAGTCACCGTGTGGTGCGAGTCCGACAAGTTCTCCAGTCGCTCCAAGGCCCAGcagtccttctcgGTCACGGACGTGGAGTGTGTACGCGAGGGCTTGCAGTCGGAGACCCTGCGACAGCTGACGGGCTCAATTCCCGAGGGCCAGTGTCTCACTGTGGTGTTCAAGGGGGCCAGGAAGAGTCTGGACCTGCGGTGCCACACTGACGAGGAGGCCCAGCGCTGGGCAAGGGGCATCAGGACCCTCCAGGAGAGGGTGGAGAACATGACCCAGAAGGAAAAACTGGACAACTGGATCCGTGGCTATCTGAAACGGGCCGACCTGAACCATGACGAGAAGCTGAGCTACGAGGAGGTCCAGGGGCTGCTCACCATGATCAACATCGACCTAAATGAAGAGTATGCGCGCAACCTCTTTAAGAAGTGTGACCGGTCGTGTGACGGTCGTCTGGACCACGGGGAAATCGAGGTGTTCTGTAGGGAGCTGTTGCGGCGGCCAGACCTGGATGCTGTTTTTAGCCGCTACTCGGCTAACGGCTGTGTGCTCTCCACCGTGGACCTGAAGGACTTCCTGAAAGACCAGGGAGAGGACTCCTCGCTGATCCACGCTCAGAGTCTGATCCTCACCTACGAGCTCAATGAGTGGGCCCAGAAGAATGGGTACATGACGCCCAATGGTTTCACCATGTACATGCTGTCCAAGGAGAACAATGTGTTTGACCCGGACCACGCCAGGGTGTACCAGGACATGACCAGATCTCTGGCCCACTACTTCATCTCCTCCTCACACAACACCTACCTCACCAGTGACCAGGTTACTGGCTACAGCAGCACGGAGGCTTATATCAGGGCTCTGAACCAAGGCTGTCGCTGTGTGGAGTTAGACTGTTGGGATGGGGACAAAGGGCAGCCGGTCATCTACCACGGTCACACACTCACCTCCAAAGTGCCCTTCACAGAAGTCATCGAGACCATCGCCGAGTACGCCTTCAAAGCGTCTCCGTACCCTCTAATCCTGTCCCTTGAGAACCACTGCAGTGTGGAGCAGCAGGCGGTCATGGCCCGACACCTGCGCTCCATCCTTGGGGACAAGCTGCTCACCAAGCCCCTCAATGAACAGCAGCTCCAGAGCTTGCCCTCACCAGAGGCGCTGAAAGGGAAGATCCTGGTGaaggggaagaaggagagagtggtGGAGCTGGAGAGCTCCTCCAGTTCTTCAGACCTCAGCTCCTCGGAGGAGTGTGAGTGTAGCCATGCAGAGAGCaaaaagaaggaggagaagaagCCGGGTGTCTCAAAGCTGAGTCCAGAGCTGTCAGACCTGGTGGTGTACACACGCAGTGTTCCCTTTAAAGGCTTTGACCAGGCAGCAAAGAAACCCCCTACAGAGATGTCCTCCTTCTCCGAGAGCGAAGCCCTCAAACACGTCAAAGAATCAGGGAAGCATTTTGTCCGTCACAACAGCCATCAGTTGAGCAGAATATATCCCTCAGGACAACGCCTGCAGTCCTCCAACTACGACCCCCAGGATATGTGGAACGGCGGTTGCCAGATTGTGGCGCTGAACTTCCAGACGGCAGGGGAAGAGATGGACTTGAACCGGGGGCGCTTTTTACCCAACGGCCTTTGCGGATACATCCTCAAGCCCTCCTTTCTGACCCGCCCTGACTGCAACTTCAACCCCGAGAACACGGGGGGAGGACCCGGACACGACCCCACCCTCCTCACCATACGGGTGATTTCGGCCCAGCAGCTTCCCAAGCCAGAGTGGGATAAACCCAGCTCCATCGTGGACCCTCAGGTGTGGGTGGAGACCCATGGCGTTCCCATCGACAACAACAAGAAGATGTCCCCCCGCGTTGACAACAATgGGTTTAACCCTCGGTGGGACTGTACCTTCAACTTCACTCTGCATGTCCCTGAGCTGGCTCTGGTGCGCTTCATGGTGGAGGACCACGACTTCACCTCCAGAAACGACTTCCTGGGACAGTTCACCCTGCCCTTCACCAGCCTccgcacagGTTACCGTCATGTCCACCTGCTGAAGGTCGATGGTTCCAGCCTGTCACCCACTTCTCTGTTCATCCATGTTAAGGTCACCCCCTGCCACAGTAGCCCCTCCAAGGCCTCAGCCAAATCTCCGTCCTCAACCAAGATCGTAGCCATATCACCAGCCATATCTCCAACCACGTCCCAAGCCAAATCGCCAGCCATATCTCCAACCACGTCCCAAGCCAAATCGCCAGCCAAGAAGCATTAAGTCTCTCCCCAGGCTCCACCAAGTAACCCAGGGTTAAGATGAAACTCATTCTGTCCtctactcttttttttttatggtGTAGTAAACATGGTTGTAGTCCATTCCCATTTGAATTTTGATAATTCTGCCTCTGCTTCACTCACAGTATTATTTTTTAAAGAGAACATGAAAACTAACCACTGTTCTTGGTTCCTCCCAACTTGAGTGATCTAAGTAGTGGGCCCAAGTGGAGAATGTCTATATCATCAACAGTGTGGATGTCCTACTGTATACCATTCATTATCTAACAGCATATCTATAGTAATGAAAGTAATGAACTTCGATCTCCAGTATTCTGTGAGACTACTGGACCAGGATCTCTGGCTGCCTCTTTTGTGTGATGATTGGACCAAACACAAAAAGAGTTACCAACCAATAGCCAGCCAGGGTATTGGGTCGATGGGACATCCCTCGACAACCATTGTTGAGCAGGTAAACCGTCCAAACAGAACTTTGCATATTTGAAGCATATTAAAAGGACTGTTTTAAGAAATTATTATTCACCAGTATTTTTAAAGAATCACATTCTTACAGGGTGTAACGTATTTGTTCCTTACAGAGAAGGTCACTCTATACCGTCCCTGGATTAAATTCTGGCCTGATTTATGGCTAAAGTTCATCAAAGGACTTATCAGTTTTCCGAGCCGAGGCATCTTTAGAGATGTAACCATATAGAAGTTTGATTTTATATTTATCATTTTCATATTATACTTTAGTTATCTAGTTGTTGTAGATAGATATAGTTATCGTAGCAATACTAGAATATGCACTATAGTAGATCTTGTTGCCTTTTTGTAGCACGTTTTGAAGATATGAAAGATATTTACAATATGTTTGTAGCATTTCAGATTGGTctaagaaaaaaaatgtataacaaGTAACCAGGTCCATGATGTTTTCAAGTTTTTGTTTCATGATATCACTGTTCAAGTGATGTTCAAGTTCAATAGGCTGTGTCTCAATAGTTGGAAGTAGTTTCTTATCCTGTGTCCTTATGTCCATGATGGCCGTTCAGGCTGGACATGTCAAATGAAGTGTACCTTTCCTGAAAGCCTTGTAGCTAATGTGGAACTTTAGAATTTTTCTGACGACTCAGACCGTGGCACTTGATGAACAGCAAAGTGCATCGTTTGACAAATCTAATTTGTTCAAGCACAGAAGATTGTTTTTAGAGTTGTTACTCTCTGGCAGCTGTGCGTCTGGGTTGTCGAGAGAAATAGCATGCCTCGTTAGCTAAGGAAAGTCGGAAACTCACACGAGTGCCATTGATTTGAGTCCATCCGCCTATCAGTGATTAAGGAAAGGAGATGAAGGAAAAGGGTAAAGGAAAGGAGAAAAGTAAGTCATTTTAGAGTATTCAGACAGCCAGGTGTACTGTAGAAAGATGTTATTGAGACTAACGATGACAATCTTCAACTTGGGACAAGAAGTGGGGTTAGTTTGAGACTctagccttttaaaatgttttaaagtgATTTCAATGATTTGAAATACATTATCTATTGTCCATAATGTATATCATGTCATCTTTGAAAGAAGGGTTTTAACATCAATATTCTTGTTTATTACCCAGATCAGTTTTGTTGTAGAATGATTTGATAGACAATTTTTATACATATTTGCTGTAATGTAAACCAATAACATCCATTTTAGAATGCTTTTtaaggaatatgtttttgtaataGTTTACAttgcgtctcagagtaggaatgctgatctatgATCAGTCTTGTCTTTTAGATCCTAATGAATACAATGTTATGGACGGGGGGACCTGGTCCTAGGATCAGTACTCTGATATGCTTTATACATACGGGCCCTGGTCTACTCCTCAATGGTATTGTATGGATTCAAAGAGAGATGTGATGTTTGTGTAAAAGTTGTGAAAATGTCCTTCTGTGGCAAAGATAAGGAGAAAAATGCATACTGTAATTGTTGTGCAAAATACAAACATCCACGTCACGCTATTATATATGGTATTTATTGCACATATTTTGGCTATAGCTTATTTATTTTGTACAGTGATTTTCCAGGGCAATGAAAAGTATTGTTTTAATTAAAGGACACTTTCAGGTTTCCAATACCAAACATATTGTATCAACAACATGGACCTAAGTGTTCAAAcaaaatgtgatttaaaaaaaaaaaatgttactgGAGGGGATGGAGTAGATAttggatgatgatgataatgaggaggaggaggagggtaaacAGGGTTCAATTCACAAAACTGACTGGGAAATTACAGTACAAATGTGTTACGTATGTTGGGTTTATCCTTTAGTTTTATTATATGACATGTCACTGTCCAAAGTACACTTCTAAATGCCATTTCTCTTTCATTCTTCTGTATTGTATGgcatatatttttaaaaactGTCATCCATCTTCCATTATCAGCATTTCTGCATGTAATACAGGTCtgttatacaggattattaaaggcccagtgcacgacttttgcccccccaaaaaattcagggggtgctgcagcaccctcaagCACCCCTGCTTCAATGCGTATGTTTATTGTAGGTTGTTCTTTTTAATGACCTCTTTCATAGTGTTTTTTTACTCTTGTACATTTCAGAACTTTCATTTCTCAACTTTAACGCTTGCAGTTATTGAATTCTGCTTATTTAAGGTTTCCTATCATAGAAGATGTATTTACGTCATGTGACTCGACTGGTACACTGACCAGGATGTTGGATGGTGTAGTCCGGGTGACCCAGATGCTCTTgtgtcagttttgcatttccctcacttaatggttaaggttaggattgggggaggggaagcagatcctagatctgtaccaagGGAAAACTTCACCCCGGGGGCATGTTGGATTCACAACACTGTCAGAATCTGGTACTATGCAACAATAACAAAAATATACTGATAAAAAAGTTTGAGTTAAAAGAATTTGCGTTAATGCAATGTTTACAGTATTTATATCTGGCTGTAATATCTGAAtcaattaaaaacaaaaataaaataaatgaaaagtgG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1550282 lncRNA upstream 113731 25604245 ~ 25604577 (+) True G1356272
TU1550102 lncRNA upstream 413783 25304268 ~ 25304525 (+) True G1356111
TU1550085 lncRNA upstream 427372 25290705 ~ 25290936 (+) True G1356094
TU1549528 lncRNA upstream 456857 25261233 ~ 25261451 (+) True G1355575
TU1549505 lncRNA upstream 493069 25220736 ~ 25225239 (+) True G1355552
TU1550414 lncRNA downstream 18521 25783846 ~ 25784196 (+) True G1356395
TU1550719 lncRNA downstream 22388 25787713 ~ 25787971 (+) True G1356665
TU1550817 lncRNA downstream 188567 25953892 ~ 25954148 (+) True G1356754
TU1550818 lncRNA downstream 189510 25954835 ~ 25955064 (+) True G1356755
TU1550849 lncRNA downstream 239113 26004438 ~ 26069048 (+) True G1356780
XM_036946602.1 mRNA upstream 15579 25631211 ~ 25702729 (+) False arhgap23b
XM_036946600.1 mRNA upstream 15579 25654679 ~ 25702729 (+) False arhgap23b
XM_036946601.1 mRNA upstream 15579 25654679 ~ 25702729 (+) False arhgap23b
XM_036946603.1 mRNA upstream 15579 25654679 ~ 25702729 (+) True arhgap23b
XM_036946604.1 mRNA upstream 18354 25654676 ~ 25699954 (+) False arhgap23b
XM_036946609.1 mRNA downstream 9345 25774670 ~ 25780246 (+) False nmt1b
XM_036946610.1 mRNA downstream 9345 25774670 ~ 25780246 (+) True nmt1b
XM_036946614.1 mRNA downstream 30648 25795973 ~ 25907006 (+) False svild
XM_036946612.1 mRNA downstream 30649 25795974 ~ 25907006 (+) False svild
XM_021565408.2 mRNA downstream 30650 25795975 ~ 25907006 (+) False svild
TU1549230 other upstream 934796 24764639 ~ 24783512 (+) True dcakd
TU1549200 other upstream 1034389 24681414 ~ 24683919 (+) False G1355273
TU1549194 other upstream 1037193 24670599 ~ 24681115 (+) True LOC110491698
TU1549199 other upstream 1037589 24670439 ~ 24680719 (+) False LOC110491698
TU1548560 other upstream 1628274 24085708 ~ 24090034 (+) True G1354681
TU1550905 other downstream 311216 26076541 ~ 26089383 (+) True znf281b
TU1551395 other downstream 539626 26304951 ~ 26314801 (+) False mpp3b
TU1551392 other downstream 541167 26306492 ~ 26314801 (+) False mpp3b
TU1551396 other downstream 546371 26311696 ~ 26314801 (+) False mpp3b
TU1551398 other downstream 546371 26311696 ~ 26314801 (+) True mpp3b

Expression Profile