RNA id: XM_036946613.1


Basic Information

Item Value
RNA id XM_036946613.1
length 5484
RNA type mRNA
GC content 0.57
exon number 31
gene id svild
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 25795973 ~ 25907006 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACATGTAGATGTCAGATAGCGTTATTGGATTACGGGCTGATGACCCATACTGAGCTTCGTCTCCTCGCTGCCTGGTCACATGACCCGTCTGGAATCGCACACTGCTAGAAACGGGACAGGAAACTCACCCACTTTTGCTGCTGTCCGGAGATGTGCGTCTACCGGTCTTAGCTTAACACCCTTTtcttaaaaacattattttcaaCTAGAGGCATAGTGTAGCCTACAGGAAAAGTGAGATGATTTTAATGACGTGGTCCATCATCCTTCGAGGGGAGACCAACTGCAAAACCATCAACGTCTGAACAACTCTTGTGACTCCTCTTGTGACTCCTGGTGTCCAGTGGAGAGGAGGCTCCTCAAACCCCCGGATATTGAGTGAAGCGAGAGGACTTAAAAGGAGGCACAACAAAATGGATACCGTAGACACCATCCAGAACTCTGCCTTGGAGACCAAGGCTGAGCGCATCGCCCGCTACAAAgccgagaggaggagagagctggCGGAGCGTTACGGAAACACTGAGGAAGTCAGCTCTAAATACACCAGGAGGGAAAGGAAAGCTGGTGAGACTTCTGAGAAAGAGAAGCCGGAGGACAGAAGCTCCAAGTCCGAGCAGACGTTATCTAGCCGGGCCACCAGGAGTAGGATGGAAGACTGCGAAGAGTCTGTTGACAGCGAGTCCTCCCAGGAGACCGGGGGGGATGAGGAGGCCCAACTGGATACAGCTGCCCCCTCAAAGCCTGCTGCCACCAAGAGGCTTAACTCTAATCACAGCATGGACACGCTGCATGTCGTGGCCCCTCCCCTTCACCCGCCAGTCAAGCCAGGGGCGGGGTCAACCGTGCGTCGCCGACCCCTCCGGTTGCTAAGGGGGGTGTCTGAAGGGAGCCGCATGGCTAGCGGTCGTTTTCGGACGCAGCCGGTGACCGCCAGCGATGTCACAGCGAGTCAATGCCTTTTGGAAGCTGGGGACACCGAGGAGCCAGAAGtaactgACAGGAAGACTGACGGAGCCAAGATGAACGTGGCTGCCGACGTGTCTTTGATTAAGGGGCTGGAGAAGACTGAAGAGTCGTCCCCCCTGACAACAGAGGGGAGTGGTCGCCATGCCAACAACAACAGCCGAGCGCACACCCAGCCAATCACAAGCAAGGAGATGGTGGCGGCAGGCAGCCCTCCCAAGGAGGAAGAGTCTAAAGGCTCAGAGATGCAGGAGGCTACAGACAAGCGCAGGTCGAAAGGGGAGCGCTCCCACACACAACCGGTCACTGAGTTTGAGGTGAAGAGGCTCTCGTCCTCCAGTTCCCCCCTACCCCTCTCCAACCAAACACCATACCCCGGAAGCAAGGACGAAGAGGACAAGTCCCCTATACCCTCCCAGCCTGTCTTGCTGCAGCGCCAAGACTCGGGCACCCGCAGCGGCATCAAGGGCATCCTCAAAAAGAGTCGTTCCACTAGTGTCGAGTCGGACTACAGTGAGGGAGGAACCCCTGAAAGCACCCCCACCACCGGGGTGGTCCGACAAACCAGCGTAACCCTGAGCCACCCCGAGAGCGACGAGGAAgatgaggagaaaacagaggatgtggaggaagaggaggatgagGAAGATGAGACGATAGTGGACGATAGCCCCGACGGAGGGCGTTTCAGTACCCCCCGGATGCAGAGGGGCAGTGGGCGTGGTGGTAGCAGTAGTTCAGCGGAGGACCTCCAGAGCCGGACCCCCTCTCCAGACGAGAGCCtgggggaggaagagatggagaagaTGTCGTCTTTGGACACGGAAGATGGAGAGGATCAGGATGTGGATAGCAGTCTGGACAGCAGTGTGGGGTCATCCCTGAAAGAGAGgcTAGCTGAATTGAGCAGTGGTGAGGAGGAGTGGAAGGCCAAGCTGAAGAAGCCCAAGGATCTGGTGCAGAAGTCCCTGGCTGACCGTTTCAACCAGCTCCAGGACTCTGGAGATGCCTGGAAGAAGAAGAAGTCCAGTGCGGACGTGGAGACCAAGATGTCCCTGGCGGACAGGATGAAGATCctacaggagaaggaggaggcatGGAAGAGCAGGGGGCGGGGTGCCGCCAACGACTCCACCCAGTTCACCGTGGCCGGGCGCATGGCCAAGAGAGGTCTTGTGTCCGAGACTAGTAAAGAGGAGTCTCCCATTTCCCACATTAAGAAGTCCAGTGCCACGCCAGTCAAGCCACATGAAGAAATCTCCACTCCGACTGGTGTCAAGGTGGAAGGGGACAAGAGGCTGGACAAGCTAGAGTCCTTCCTGGACAAGCTCCACAGTAAAGGGCTGGGTCACAGCCGGACTTCCACCATCGAGGTGACTGCCGAGACGGAGAAGGAGGTCATGACCCTGGATGATGAGGAGACGTTTGGCCGCTTTTACAAGCCTGTGTCGCCCACCGTCCGAGGCGCTGTCGTTACTGCACTGACCGAGGAGGAATTCAGCGACCTTCAAGCCGACACGCCAAAGTTGACGTCGGCAGTGACGGAGCACAAGCGTGCTGTGCGTCCTACTCGGAATAACCAGGGCTCACGCAACCCCCTCCGTGCCCTGGCGGCCCGCAACGACATCCGCCAGGTCTACACGGAACAGAGACTCAATATAGCTACCGTGGAAACCAAGAGGATCCAAGTGGAGAGGATGGCCAAGCATTCCAACCTGGCAGACGCAGCTCTGGCCGGCCTGGCTAGCAAGGAGAACTTCCGCAAGGTCAACCTGCGCAGCACCAAGTCCACTGAGGTGGTGACCAACAACAGCACGCTGCCCTTCAACAAGCTCATGCTCATCCGCATCAAAGGTCGGAGGCACGTGCAGGTGCGTCTGGTGGAGCCCGCTGCCCATTCCCTGAACAGCGGCGACTGCTTCCTGCTCATCACCCCCAAACACTGCTTCATGTGGAGCGGAGAGTTCGCCAACGTCATCGAGAAAGCCAAGGCCTCAGAGATGGCATCGTTCGTGCAGGCTAAGAGGGACCTTGGTTGTAAGGCCTCCCAGGTGACTGTGCTGGAGGAGGGCATCAACACTGACAACAAATGGGCTAAGGAGTTCTGGGACCTACTGGGGGGCAAGACCGACTACAGAGGTGCAGGGGAGCCGGAGGAGGATGAGCTGTATGAAAGTGGTGTGTTAGACTCTAATGGGGTCTACGGGCTGCAGGAGGGCAAACTGGTGCCCCACAAAGAGGCCTGGGCCTCCATCCCCAGTGTCACCCTGCTCAACTCTAAAGAGGTGTTAGTGTTTGACTTTGGCAGTGAGGTGTACGTTTGGACGGGGAAGGACGTCCCCCTTGGTGACAGAAAGGTGGCTGTCCAATTAGGGAGGCAGCTGTGGAGCGGTTCTTACGACTACAGCAGCTGCAGGGTCAACCCCCTGGACGCCTGTTCAACCAATACTGATGTCCCTGAgcaGGGTGAGGGACGTCCCAGCTGGGCTCTGTTCGGCCGTCTGTCGGAGCACAACGAGACGGCTCTGTTCAGAGAGAAGTTCCTGGACTGGGCCGAGAGGAAAGAGGAGTCTGCCATGGATGAGGCCAAGagCCCTGTGCACTCTACCCTCCGCTCGCCCCTTGAGGCGGCCAAGCCCGACGTCTTAAAACCGTGCGACGCCAAGGCCCTGCTGGACAATGTGGGTGGCCCCGTACATAGCCTCCTGGAGGGCGTAGACGTTCAGCGTGGCTACGGGATGGTCCGAACGGAGGACGGACGCCAGGCGGAGCTCGCCACAGTGGCAGTGGACGCCTGGCATATCCGGGAGtttgaggaggaggagctggTGGCGGCGAGCTTGGGCCAGCTGCACGAAGGAGACACCTACGTGATCCGCTGGAAGTACTCGGTCACCACTGTGGTGGGTAAGAGGCAGAAGCCGGGGGAGCTGAGTAGTGGGGGTCCAGGTCGGGAGCGCAGCGCCTGTTTTTTCTGGCAGGGCCGTCACTCCAGCGTCAGTGGCAAGGGCACCTCCGCACTGATGACCGTCGAGCTGGGGAACCACaggggggcacagGTGTTGGTGGCACAGGGCAAGGAGCCTCCATGTTTCCTGCAGCTCTTCCAGGGAGGCCTGGTCATCCAAAAGGGTAGCAGAGAAGATGATCGCGTCAACAACACAGGCGGCTGGCATCTGTATTGCGTGCGCGGGGAAGCCACGGTGGAGGCTTCCCTGGTTGAGGTGGAGTGTTGTTGTGCCAGCCTGCGTTCCCGAGCCACCCTGGTTCTGCTGGATGCCCACCAGGGACAGCTCTACCTGTGGCACGGATGTAAGTCCCACGCCAGCGCCAGGGAGGTGGGCGCCAGGGCTGTGGAAAGGCTCAAGCAGAGGCATCCATCTGAGCTGGGCCTGAACAGTAACAGCAGTCTGaaggtggaggaggtagaggaaggcacGGAGCCAGTTGGGTTCAGGAATGCTCTGGGACAGCAGGACAGGAAGGCATACGACTGCATGCTCCAAGATCCAGGGAAATACAACTTCACCCCACGACTGTTCTGTCTGAGCGCCAGCTCGGGAGTATTTGAAGGGGAGGAACTGCTGAGCCCGGCCCGAGTGACTGGGGCCGTCATGGCCATGCCCTTCCTCCAGGAGAATCTATACTCTGTGCCACAGCCAGgcctCTTCATGCTAGATAACCgtatggaggtgtacctgtggcagGGCCGGCAGCCCGACGACGGAGAGTGTACAGGCTCAGCCAAGATCCGCTGGGAGAACCAGAAGAAGTGTGCCATGGAGACGGTGCTGCAGTACTGCAAAGAGAAGAACTCTCGCCGGCCCCCTCAGGCCTACCTGGTCCTAGCGGGCTCTGAACCGCTGACCTTCACCAACATCTTCCCCTACTGGGAGAGAGATCCCAACATCACCCCCCAGgcggaGGGGGCACGCAACAAGGTGACCCTGGTGCAGGACGCCCTGAACTGGCTGAGTAAGAACCAATACTCTGTGGAGGAGCTGACGGCCAAGCCTCTACCAGAAGGAGTGGACCCCCTCCGCCTGGAGATCTACCTTTCAGACCAGGACTTCCAGAGGGTCTTGGAGATGACTCGCACCGAATTCAACGCCCTGCCAAACTGGAAACAGAAGAACCTGAAGAAAAGCAAGGGccttttttaaaaacgttttccttttttgttgttgtaaacaaACCAAAAAACAAGAGGACATTTTAAAGTCCATATATGGCACCTTTTTCATACTGTTTTGTATTCTGGgggaaatcatgtttttttttctccatgtaAACCGAAAGAACAAAACACATGTACAGACTTGTATCTGTTTTAAAACGATAACCTCTTTTTAAAAATGCCAATTTTATAGACCTTTCCTACAAAGCAATATATTGTagccaaatatatacagtatatgcaagTGTTACCTTTTGGCAGCGAGGTTATTGTTAATTATAGTGAACTATATATGCCCCTGAATTATAAATATGTATTATAAATGTCTGTTCTTACATGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1550719 lncRNA upstream 25201 25787713 ~ 25787971 (+) True G1356665
TU1550414 lncRNA upstream 28976 25783846 ~ 25784196 (+) True G1356395
TU1550282 lncRNA upstream 208595 25604245 ~ 25604577 (+) True G1356272
TU1550102 lncRNA upstream 508647 25304268 ~ 25304525 (+) True G1356111
TU1550085 lncRNA upstream 522236 25290705 ~ 25290936 (+) True G1356094
TU1550817 lncRNA downstream 46886 25953892 ~ 25954148 (+) True G1356754
TU1550818 lncRNA downstream 47829 25954835 ~ 25955064 (+) True G1356755
TU1550849 lncRNA downstream 97432 26004438 ~ 26069048 (+) True G1356780
TU1550998 lncRNA downstream 296839 26203845 ~ 26281363 (+) True lrp2b
TU1551031 lncRNA downstream 329560 26236566 ~ 26243680 (+) True G1356917
XM_036946609.1 mRNA upstream 32926 25774670 ~ 25780246 (+) False nmt1b
XM_036946610.1 mRNA upstream 32926 25774670 ~ 25780246 (+) True nmt1b
XM_036946605.1 mRNA upstream 47847 25718308 ~ 25765325 (+) False plcd3b
XM_036946606.1 mRNA upstream 47847 25718308 ~ 25765325 (+) True plcd3b
XM_036946603.1 mRNA upstream 110443 25654679 ~ 25702729 (+) True arhgap23b
XM_021565415.2 mRNA downstream 169455 26076461 ~ 26107407 (+) False znf281b
XM_021565416.2 mRNA downstream 169455 26076461 ~ 26107407 (+) False znf281b
XM_021565417.2 mRNA downstream 169456 26076462 ~ 26107407 (+) False znf281b
XM_036946615.1 mRNA downstream 225987 26132993 ~ 26166321 (+) True muc13b
XM_021565420.2 mRNA downstream 279809 26186815 ~ 26281357 (+) False lrp2b
TU1549230 other upstream 1029660 24764639 ~ 24783512 (+) True dcakd
TU1549200 other upstream 1129253 24681414 ~ 24683919 (+) False G1355273
TU1549194 other upstream 1132057 24670599 ~ 24681115 (+) True LOC110491698
TU1549199 other upstream 1132453 24670439 ~ 24680719 (+) False LOC110491698
TU1548560 other upstream 1723138 24085708 ~ 24090034 (+) True G1354681
TU1550905 other downstream 169535 26076541 ~ 26089383 (+) True znf281b
TU1551395 other downstream 397945 26304951 ~ 26314801 (+) False mpp3b
TU1551392 other downstream 399486 26306492 ~ 26314801 (+) False mpp3b
TU1551396 other downstream 404690 26311696 ~ 26314801 (+) False mpp3b
TU1551398 other downstream 404690 26311696 ~ 26314801 (+) True mpp3b

Expression Profile