RNA id: XM_021565416.2


Basic Information

Item Value
RNA id XM_021565416.2
length 6025
RNA type mRNA
GC content 0.48
exon number 7
gene id znf281b
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 26076461 ~ 26107407 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGACTCTAGGGGAaacccctgtctcctcccctctcaggACCCGTCCGCTCGCTAGACCCATAATTCCCCGCGCCAAGACAAGATGGAAGAAAGCAGGGGCCCCAAGACAACAATGTTTTGGCTATAAAACCTAAAAGAACGAGAAAGGGAAGAGAATACGAACGTTTAATGCAAATAGCGGTCATGTGACATCCCCACCTGGCCCCATTTAGTGTTTCCCCTTTCTACACGTGCTGACCAACCATGAGTATTATCCAAGACAAGCTAGGCAACGAGTTTCTACGAGGCAATGGGGGCATGGACCCAAACTTTGCCCCCGGCATGCTCATGTTCAGCCACCTGCCGCCCGTCACCAGCTTCACCCGCCTGGCCTCGCAGTCGGTCATGGGGGGTGACCTGCCACAGGAGATGATCCTGAAGAAGGAGCGCGACTCGCCACCCAACGCCCACGGCTTCCTCCACGGCATGGGCATCAAGCAAGAGCGGATGAGCGAGCTGGACTACCGCATGCCCCTTTATAGCGGAGCTGGCGGGGGAGGAGCAGGGCTGGGTGGCAGCTGTGGCGGAGGGGGCGTGGGGAAGGGCAACGAGATGCTGGAGATGCAGTTTGGTGGAggccaccaccacaaccatcagaACATGCTTCTGCACGACCTCAGCCTCGGCAATGTCCGAATGGGAGAGCCGATGTCTGGAAGACCAGAGAAAGGGCCGAAAGAGACGTCGGGAAGAAGACGGAAGAGCAACAGTGATGGGGAGGGGAAAGCCAGAAGAAAACGTGGAGAACCCAAGGCCATGATGTTGGACGGCGAGGGGACCGGCCTCTCTCCCAACTCCAAACCGCACATCTGCGAGCACTGCAACGCTGCCTTCCGCAGCTCCTACCACCTCCGCAGACACGTGCTCATCCACACAGATCGCACAGGTGAGAGGCCTTTCCGGTGCAGTCAGTGTAACATGAGCTTTATCCAGAAGTACCTGCTGCAGCGGCACGAAAAGATCCACAGTGGAGAGAAGCCCTTCAGCTGTGACCAGTGTAACATGTGCTTCATCCAGAAGTACCACATGGAGCGACACAAGAGGACCCACAGCGGAGAGAAGCCATACAGATGTGACACCTGCCAacagTTTTTCTCGAGGACAGACCGGTTACTGAAGCACAAGCGGACCTGCGGAGAAGCCATAAAGAAGGGCCCGGACCCCAGCATGTTGGAGCTTGCCCACGGGGACATGGGCCAGGGCAACTACTCACTCACTCAGGGAAACGCTACCGCCACCTCTGCATGCAAGAGGGGCAAGTCCAAAAACGCCGGCGAGGGCGGTGATCGTAAGCGTAAGAAggctgctgccaccaccgtgtCGTCCGGGGGCCTGCAGGACTATGGAATGGAGTGTTCCGACCCCAGCCTGCAGGGCCGCACACCCAAGCTGGTGTTCAAGAAGGCTAAGAAGGGCCTCGTCCCCATGGAGGACGGGGGGCAGAAGCTGCTGTCTCAGAAGCAGGGCTCCTTGGAGCTGGCGGGGGGCTCAGGGCTAGATGCCATGGTCCTCCTCCAGGGCTCCTCCAGCGGAGGGGCAAAACGAGGCCCATCAGCCACAAGCAACAACTACGATGACGCCATGCAGTTTGTGAAGAAGCGGCGCTACCTCCAACACGTGGCCAGCAACGACTATGCGGCGCCCTCCCTCCACATGGGCCAGACCCATGCCAGCAGCGTGATCCAAGGCTCGCTGGGACACCTTAACGAGCCCACCCTCACCATGCTGGACACTTCGCCCCTGGACCTCAAGCACCACGACAAGTCGGTCATCCCGGACGAAGTGCTCCAGAGCCTGCTGGACCACTACAGCCACAAGTCGGATGGcacgcaccaccaccaccacgacgTGACCTTTGACCTCTCGGACCACAGCGTCCCGCACCACGTGACCCTGCAGCCAGCGGCCCCTGTCACCCCAGAGCTGGACGACGACTCGCCCAGCGGCAGCGACAAGCAGGTGGTCATGAGTGAGTACTCCAAGTTCCTTCTGCAGGCCCTGGAGCGCACCAGCCACAGCGGGCCCTTCTCCACGCTGGGACCCAGCGGGCCCTTCCCTTTGCTCTCCAGCCCTACGGGGCCCCTCTTCTCCGATAAGCATGTCTACACTACGTCTCCGCTGGAGTGCGGCTACCCGCCCGCCGACTCCTCGCCACTGCCcatcccctccatctcttcttcttcctcctccttgtcgtCCTCTAAGTCCCACTACAGCATGGTGGTGGGCTCCCCCTCCCAGCCGGCCTTCCACCTCAGTGGCCTGGAGGCGGCTGGCCACCAGCAGCTCATCCCCTCTCAGGAGCTCACAGAGCAGCTGGAGAAGCAGCACCAGTCCCCTGTGTTCCAGCTCACGCCCCAGGAGCTGACGGCCGCCGATGGAGCCCCCAAGGAGCAGGGGGCCAAGGGCAACGGGAGAAACGGCAGCTACTCCGACCTGGACACGCCCAAGGAAATGGACCTGCGGGCGACCTACCAGATCGAGAACTTCGCCCAGGCCTTTGGTTCCCAATTTAAGTCGGGCCGCCGCACCCTGCTGGGCTACGGCACTGGGGCCGAGGTCGACCACCGAATACGAACTCCCGTGTCAGAATTCTCAGGGTATACCAGTTTGTTAGCTGACGTCAGCGAGCCAGTAAGTACAGGATCGAAAACCCCAACAAGCCAAAGTTTCAGGTAAGGGTTAAAACGAGGTGAACCTAGTTGCGGGTCTTGTGTTTTTCTTTGTGTCCCTATACCCTTCTACATTTTGTTCTTGTAGCGAGgtcaatttattttttaaacactgCCATTAAATGTTGATAACGAGAACTCTACCAGGGGAAGGTCTTCAAGGCCTCAAATGCAATTTTtttatattcatttttttttaaaatctgtatTTTGTCTTTATTTTGTTAGCGTAGTTGGTATGATATGAACGTAAACGTAGATTTTAATGTAATTTAAACTGAAAAATTAGGGGTTAGCTAAGCTTGATTTTTCTTTGAACTCTTGTTTTTACCAATCATCATACAGTTGTAAAGTAATGATGAATGATGTTAATAATTTCTATAATATTACGTTTGTGGCAGGGAAAGGCCCAGAATTCAAATGGCAAAAAAAGTTCTATATTGTCTGTTACTAGAATCGTATTACTCAGGTATTAAGGCAAAAattgtgtaataataataataaaaactttGTATTATGAGATGCAATTAGCACACTTTTTTTAAGTGTGCTTTGAGACTACAAAGCTTTTTTACTATTTATCCCTCGAGGAGCGGGGGAacaaaaagacaaaacaaattcaGCGGATCTTCCTGTTCAGTTTTCTTCGCCATTGAACAACCCTTTCCTCTACGTGTAGCTGTGTAGAGATTACGGTACTTCTGTGTCAATGTGAAAATGACCGTTCCCATTTCCTCCCCGTAAAGGGCCACATGTAAAACACACGCAGACGCGGATATTTTATACACTCAAGAACTCGTAGTGCACACAGTCCAGGCTCAACGGAAAGAGGTTTCAATCCGCAGACCTTTTTTGTTTATAAACCGTGTCAAGTGATGTTTGTCTAGGCCATGCACCTTTTGGATGGCCCCTTCAGTGGCCCGTGACAAGGAAATGTGCTGGCCCCGTTGGCGACGTTTCAACAACTGTTGTCGCTCATTTTTACTGGGTTCCACTCCACTCCTGGCTGTTAACTTCTTATTTTTTTTGGTCAGTGGAAATCAAACAAGCACTTTGAAAAACAAAATTGTCATTGAAAACTGAAAACATCCCAACTCAATTAAGGATGTGCAAAACCaagtgattattattttttattttattagagGAGAGAACTGTGAACGGGGGTGGGTGGGATAGGGTGGTTTGTTGTTCTGTAGGGAGGGTTAGACTGGGGTTGAATAGatgtatttttgttttgtgtttttttgacGGTTTGGTCAAGGGGAAGGGTTGTACAAATGATTTGCCATTACTGTATGTAACCCAATGTTCTGAGAAGATCTCTGTATtgataccgaacaaaaatataaacaacatgcaacaatttcaaagatttgactgagttacagttcatataaggaaataagtcaattgaaatgtattcattaggccctaatctatagatttcacatgacttggcagGGGTACAGTTatgggtgggcataggcccacctactggggaaccaggcccagccaatcagaatgagtttttttcccccacagaAGGGCTTTATTATTTttggttcccgagtggcgcagtggtctaagacattgcatctcagtgcaagaggtgtcactgcagtacctggtgattgggagtctcatagggcggcgcacaattggcccagcgtcatccagggtaggccgtcattttaaataagaatttgttcttaactgacttgcctagttaaaggttaaataaataatattacATTACAATCCAAAATACTGCTCAGCGCAAATGAAAGaattaagctttttgtgtgtatggaacatttctggggtttattatttcaggtcatgaaacgtgggaccaacactttacatgttgcgttttatatttttgttcggtgtaaGTTGTTTCGAGAGGGGGCAGATATTATGCTGCAACACTTCCCACTGGTGTACTAAGACTCTACTGGATGCAAAAAACAAACTATTTTCCCTTTATTTATTTGTAACCTAGCAAGAGTTTTTATTTTTGCAGGGTGTTTTTGAAGTGCAAGTGTTCACTGTACATCAATCTGTCTGTACCTTATGAAATCAGGCCTGATGCATAAAAATTACCTCACTCATACAGGCTCAACGttatggtgtatatatatatatatatatatatatcccccaaAAAGGCAGTCCTTCAAACTTTGCAAGAATAAACAATGGCCTTCTTTGTCTTCCGCAGCTCAAGCCATTCTCTCCTGGCAGTCAGGGTTGATATTTAGTTAATTTCCTGTGtgcccccctccccacccccaccACAGCTGATAGACTTTAAAGCTGCTCAGATCACAGGGAACAAAAGAATGGCTGACTGGCCACTTCACTCCAAAACACACACTATGCTTTTAAagaaaagagggagagcgagagacagatgAGGAAATAAAAAATAGGAATGACctaaatatacagtggggtccaAAATTGACAACCTTGATAAAGATCAATAAAAGTGACTGTAAAATACTGATCTATATTGTATTCTCAAACAAATGGGGGAAATATATTAGATTATGCTTCAGTGCCATTATCCTCtgaaggtgaggtattgaaaacagagGTATCAATAATTTTGACCCCCACCTTcgttctctgagcaattgtattagtattcAATATTGTATTTTCCCCAGCatgcaatatagctcagtattggAATTATTTTATACAGCAATTTTTGCTCATTTTTGTCAAGTGTGTCTTTCAGAGATCAATGTACCTCATATCACTGAAGCGTCAGAAAACAGGGACACGTTTCATGTATGTAGTGGAAATACTTGTAGTATAGGTTAAACATTTGTATAATCATGTAACAATGCCTGTGTTTACAATTATAGAAGAGCAATTGACTCGTTGAATtgcaaaatgtatttgttttgtcTAAAGCCTTCACGCCAAGCAGTGTTGCATTCTAGATGCCTCATAGAAACTTTAATTTCTCATGTTATATCCCTTATTTTTGTTACTCGCCATAAATGTGTTGATATGATCTCTAGAAGGATATTGTTTACAAAAATGTACAAAAACACTAAAAATGTATgttaatttttttgtttttgtttctacCGATATGCATGATATGTTTTTATGGCTTTTTTTCTTATCGTCACCAGAACACCAAATTTTGTAGCAGATGCCTCCCCATCCCtgtctttgtttttttttgttcaaaACCCTTGTGATATGATTTCCAGGGCTGTACCTGTTATTGAATTTATAAAACGATTTAGAGAAgccaataaaaacattttttggtaATAAAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1550849 lncRNA upstream 7413 26004438 ~ 26069048 (+) True G1356780
TU1550818 lncRNA upstream 121397 25954835 ~ 25955064 (+) True G1356755
TU1550817 lncRNA upstream 122313 25953892 ~ 25954148 (+) True G1356754
TU1550719 lncRNA upstream 288490 25787713 ~ 25787971 (+) True G1356665
TU1550414 lncRNA upstream 292265 25783846 ~ 25784196 (+) True G1356395
TU1550998 lncRNA downstream 96438 26203845 ~ 26281363 (+) True lrp2b
TU1551031 lncRNA downstream 129159 26236566 ~ 26243680 (+) True G1356917
TU1551390 lncRNA downstream 174834 26282241 ~ 26282589 (+) True G1357249
TU1551400 lncRNA downstream 197544 26304951 ~ 26314801 (+) False mpp3b
TU1551394 lncRNA downstream 198660 26306067 ~ 26314801 (+) False mpp3b
XM_036946614.1 mRNA upstream 169455 25795973 ~ 25907006 (+) False svild
XM_036946615.1 mRNA downstream 25586 26132993 ~ 26166321 (+) True muc13b
XM_021565420.2 mRNA downstream 79408 26186815 ~ 26281357 (+) False lrp2b
XM_036946618.1 mRNA downstream 175664 26283071 ~ 26314809 (+) False mpp3b
XM_036946616.1 mRNA downstream 175668 26283075 ~ 26314809 (+) False mpp3b
XM_036946617.1 mRNA downstream 175668 26283075 ~ 26314809 (+) False mpp3b
TU1549230 other upstream 1292949 24764639 ~ 24783512 (+) True dcakd
TU1549200 other upstream 1392542 24681414 ~ 24683919 (+) False G1355273
TU1549194 other upstream 1395346 24670599 ~ 24681115 (+) True LOC110491698
TU1549199 other upstream 1395742 24670439 ~ 24680719 (+) False LOC110491698
TU1548560 other upstream 1986427 24085708 ~ 24090034 (+) True G1354681
TU1551395 other downstream 197544 26304951 ~ 26314801 (+) False mpp3b
TU1551392 other downstream 199085 26306492 ~ 26314801 (+) False mpp3b
TU1551396 other downstream 204289 26311696 ~ 26314801 (+) False mpp3b
TU1551398 other downstream 204289 26311696 ~ 26314801 (+) True mpp3b
TU1552517 other downstream 1221904 27329311 ~ 27332275 (+) True G1358292

Expression Profile